G2C::Behaviour

CYFIP1 knock-out mouse

S.G.N. Grant and the G2C Consortium

Corresponding email: Seth.Grant@ed.ac.uk  

 

Overview: Effect sizes (Cohen d) for 16 behaviour variables

Mutant mice showed little overall behavioural difference from wildtypes, with three of 16 behaviour variables significantly impacted in these mutant mice. In the elevated plus maze task, one behavioural variable, EPM total distance, was significantly increased in mutants. In the open field/novel object exploration task, one behavioural variable, OF NOE total distance, was significantly increased in mutants. In the rotarod task, one behavioural variable, RR memory, was significantly decreased in mutants. Fear learning, contextual memory and cued memory tasks were unaffected. Definitions of variables may be found below.

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The G2CMine data warehouse provides cohort summaries and individual mouse observations from the CYFIP1 knock-out line phenotyping.

 

Variables shown are: EPM total distance, Total distance (cm) travelled in any arm or central zone of the EPM. EPM max speed, Maximum speed (cm/s) travelled in any arm or central zone of the EPM. EPM % time in open, Percentage of time in the open or closed arms of the EPM spent in open arms. EPM time in centre, Total time (s) spent in the central zone of the EPM. EPM max speed, open vs closed, Difference between the maximum speed (cm/s) observed in the open arms and the closed arms of the EPM. OF, NOE total distance, Total distance travelled (log₁₀ cm) during initial exposure to the open field and in presence of the novel object. NOE vs OF distance travelled, Difference in distance travelled (cm) in presence of the novel object and during initial exposure to open field. RR naive fall time, Fall time on accelerating rotarod (log₁₀ s), naive performance in session 1. RR learning, Learning on rotarod, measured as increase in fall time per trial (s/trial) in session 1. RR memory, Memory on rotarod, measured as excess fall time at middle of session 2 relative to middle of session 1. Fear learning, trial effect, Fear learning, measured as extra % time freezing before third trial compared to % time freezing before first trial. Fear learning, tone effect, Fear learning, measured as increase in % time freezing due to third tone compared to increase in % time freezing due to first tone. Contextual memory, mean, Contextual memory, measured as difference in % time freezing during first 120 s re-exposure to the box compared to first 120 s in the box on previous day. Contextual memory, change, Contextual memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the box. Cued memory, mean, Cued memory, measured as increase in % time spent freezing during 120 s of tone re-exposure compared to increase in % time spent freezing during initial tone on previous day. Cued memory, change, Cued memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the tone.

 

Variable Units Wildtype M (n=9) Wildtype F (n=8) Mutant M (n=10) Mutant F (n=8) P(sex×mutation) P(mutation)
EPM total distance cm 670 (26) 762 (53) 833 (63) 788 (31) 0.16 0.044 *
EPM max speed cm/s 17.5 (1.3) 19.2 (1.4) 17.5 (0.6) 17.2 (0.7) 0.35 0.4
EPM % time in open % 19.3 (5.3) 10.8 (6.6) 25 (8.1) 17 (4.5) 0.96 0.37
EPM time in centre s 161 (12) 113 (18) 129 (10) 109 (20) 0.35 0.2
EPM max speed, open vs closed cm/s -7.7 (1.4) -10.9 (2.4) -7.6 (1.1) -6 (1.3) 0.13 0.14
OF, NOE total distance log10 cm 2.88 (0.04) 3.03 (0.08) 3.15 (0.09) 3.16 (0.12) 0.41 0.022 *
NOE vs OF distance travelled cm -101 (44) 246 (220) -118 (245) 260 (207) 0.94 0.99
RR naive fall time log10 s 1.15 (0.08) 1.01 (0.18) 1.15 (0.04) 1.23 (0.05) 0.29 0.29
RR learning s/trial 0 (0.7) 1.9 (1.6) 0.4 (0.6) 1.1 (1) 0.54 0.88
RR memory s 19.7 (11) 8.8 (6.2) 2.6 (2.4) -3 (2) 0.7 0.032 *
Fear learning, trial effect % freezing 50.7 (7.6) 54.4 (10.7) 47.6 (6) 54.5 (9.7) 0.85 0.85
Fear learning, tone effect % freezing -7.6 (5) 7.1 (5.8) -3.4 (6.6) 8.4 (3.8) 0.79 0.61
Contextual memory, mean % freezing 53.8 (5.5) 51.6 (9.5) 42.4 (6) 50.8 (6.5) 0.45 0.35
Contextual memory, change % freezing 29.8 (7) 38.7 (9.8) 40.5 (9.2) 55.7 (3.8) 0.7 0.1
Cued memory, mean % freezing -13.3 (7) 3.7 (6.9) -12.6 (5.5) 3.3 (8.9) 0.94 0.97
Cued memory, change % freezing 4.4 (6.8) 7.3 (4.6) 8 (5.6) -0.3 (5.7) 0.35 0.8

 

Elevated Plus Maze Performance

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Variables shown are: EPM total distance, Total distance (cm) travelled in any arm or central zone of the EPM. EPM max speed, Maximum speed (cm/s) travelled in any arm or central zone of the EPM. EPM % time in open, Percentage of time in the open or closed arms of the EPM spent in open arms. EPM time in centre, Total time (s) spent in the central zone of the EPM. EPM max speed, open vs closed, Difference between the maximum speed (cm/s) observed in the open arms and the closed arms of the EPM.

 

Variable Units Wildtype M (n=9) Wildtype F (n=8) Mutant M (n=10) Mutant F (n=8) P(sex×mutation) P(mutation)
EPM total distance cm 670 (26) 762 (53) 833 (63) 788 (31) 0.16 0.044 *
EPM max speed cm/s 17.5 (1.3) 19.2 (1.4) 17.5 (0.6) 17.2 (0.7) 0.35 0.4
EPM % time in open % 19.3 (5.3) 10.8 (6.6) 25 (8.1) 17 (4.5) 0.96 0.37
EPM time in centre s 161 (12) 113 (18) 129 (10) 109 (20) 0.35 0.2
EPM max speed, open vs closed cm/s -7.7 (1.4) -10.9 (2.4) -7.6 (1.1) -6 (1.3) 0.13 0.14

 

Open Field and Novel Object Exploration Performance

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Variables shown are: OF, NOE total distance, Total distance travelled (log₁₀ cm) during initial exposure to the open field and in presence of the novel object. NOE vs OF distance travelled, Difference in distance travelled (cm) in presence of the novel object and during initial exposure to open field.

 

Variable Units Wildtype M (n=9) Wildtype F (n=8) Mutant M (n=10) Mutant F (n=8) P(sex×mutation) P(mutation)
OF, NOE total distance log10 cm 2.88 (0.04) 3.03 (0.08) 3.15 (0.09) 3.16 (0.12) 0.41 0.022 *
NOE vs OF distance travelled cm -101 (44) 246 (220) -118 (245) 260 (207) 0.94 0.99

 

Rotarod Performance

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Variables shown are: RR naive fall time, Fall time on accelerating rotarod (log₁₀ s), naive performance in session 1. RR learning, Learning on rotarod, measured as increase in fall time per trial (s/trial) in session 1. RR memory, Memory on rotarod, measured as excess fall time at middle of session 2 relative to middle of session 1.

 

Variable Units Wildtype M (n=9) Wildtype F (n=8) Mutant M (n=10) Mutant F (n=8) P(sex×mutation) P(mutation)
RR naive fall time log10 s 1.15 (0.08) 1.01 (0.18) 1.15 (0.04) 1.23 (0.05) 0.29 0.29
RR learning s/trial 0 (0.7) 1.9 (1.6) 0.4 (0.6) 1.1 (1) 0.54 0.88
RR memory s 19.7 (11) 8.8 (6.2) 2.6 (2.4) -3 (2) 0.7 0.032 *

 

Fear Conditioning Performance

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Variables shown are: Fear learning, trial effect, Fear learning, measured as extra % time freezing before third trial compared to % time freezing before first trial. Fear learning, tone effect, Fear learning, measured as increase in % time freezing due to third tone compared to increase in % time freezing due to first tone. Contextual memory, mean, Contextual memory, measured as difference in % time freezing during first 120 s re-exposure to the box compared to first 120 s in the box on previous day. Contextual memory, change, Contextual memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the box. Cued memory, mean, Cued memory, measured as increase in % time spent freezing during 120 s of tone re-exposure compared to increase in % time spent freezing during initial tone on previous day. Cued memory, change, Cued memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the tone.

 

Variable Units Wildtype M (n=9) Wildtype F (n=8) Mutant M (n=10) Mutant F (n=8) P(sex×mutation) P(mutation)
Fear learning, trial effect % freezing 50.7 (7.6) 54.4 (10.7) 47.6 (6) 54.5 (9.7) 0.85 0.85
Fear learning, tone effect % freezing -7.6 (5) 7.1 (5.8) -3.4 (6.6) 8.4 (3.8) 0.79 0.61
Contextual memory, mean % freezing 53.8 (5.5) 51.6 (9.5) 42.4 (6) 50.8 (6.5) 0.45 0.35
Contextual memory, change % freezing 29.8 (7) 38.7 (9.8) 40.5 (9.2) 55.7 (3.8) 0.7 0.1
Cued memory, mean % freezing -13.3 (7) 3.7 (6.9) -12.6 (5.5) 3.3 (8.9) 0.94 0.97
Cued memory, change % freezing 4.4 (6.8) 7.3 (4.6) 8 (5.6) -0.3 (5.7) 0.35 0.8

Acquired (raw) data

Animals tested in the G2C behavioural phenotyping battery

Cohorts are summarised by genotype and sex, followed by a list of all the animals from the line tested. Shown are the unique radio frequency tag id (RFID), Genotype, Sex, mouse batch identifier (Batch ID), date of birth (D.O.B.) and data of RFID chipping (D.O.C.) for each mouse.

View experimental protocols.

 

Behaviour Cohort Summary

GenotypeMaleFemale
+/+98
+/-108

 

Individual Mice

RFIDGenotypeSexBatch IDD.O.B.D.O.C.
011040259+/+FBATCH_11-0114/03/201118/07/2011
011069626+/+FBATCH_11-0114/03/201118/07/2011
014256120+/+FBATCH_11-0110/03/201118/07/2011
014260288+/+FBATCH_11-0110/03/201118/07/2011
014262575+/+FBATCH_11-0110/03/201118/07/2011
014262585+/+FBATCH_11-0128/03/201118/07/2011
014265358+/+FBATCH_11-0128/03/201118/07/2011
014266032+/+FBATCH_11-0128/03/201118/07/2011
011316805+/+MBATCH_11-0102/03/201118/07/2011
011319081+/+MBATCH_11-0102/03/201118/07/2011
011323577+/+MBATCH_11-0107/02/201118/07/2011
014113346+/+MBATCH_11-0127/03/201118/07/2011
014119272+/+MBATCH_11-0101/04/201118/07/2011
014119301+/+MBATCH_11-0128/03/201118/07/2011
014262353+/+MBATCH_11-0101/04/201118/07/2011
014265777+/+MBATCH_11-0127/03/201118/07/2011
016029354+/+MBATCH_11-0107/02/201118/07/2011
011032836+/-FBATCH_11-0128/03/201118/07/2011
011060536+/-FBATCH_11-0114/03/201118/07/2011
011326855+/-FBATCH_11-0114/03/201118/07/2011
011328026+/-FBATCH_11-0128/03/201118/07/2011
014118604+/-FBATCH_11-0127/03/201118/07/2011
014123620+/-FBATCH_11-0110/03/201118/07/2011
014127786+/-FBATCH_11-0127/03/201118/07/2011
014259773+/-FBATCH_11-0128/03/201118/07/2011
011041125+/-MBATCH_11-0107/02/201118/07/2011
011323513+/-MBATCH_11-0107/02/201118/07/2011
011347856+/-MBATCH_11-0102/03/201118/07/2011
011368055+/-MBATCH_11-0102/03/201118/07/2011
014115298+/-MBATCH_11-0101/04/201118/07/2011
014115350+/-MBATCH_11-0127/03/201118/07/2011
014120634+/-MBATCH_11-0128/03/201118/07/2011
014126011+/-MBATCH_11-0127/03/201118/07/2011
014258105+/-MBATCH_11-0123/12/201018/07/2011
014265622+/-MBATCH_11-0128/03/201118/07/2011

Elevated Plus Maze

File NameSizeChecksum (SHA256)
e1.mpg934502443ccf9aebbb4d8002144aab8bf64630a9e1dc839dc7753258c3f54dfce7deeb7
b2.mpg94556164dab5b54d4579caa246862fa5d23919311decaa0ff212c186d2d72f8e00e24bc

Open Field

File NameSizeChecksum (SHA256)
g2.mpg13285376c9d9e1427f2f7e9a49518c379917df6e7dda5420c936cf2c162a83ac07d5433e
k1.mpg13299712fd1a3dc8792141a0981b826937c94a67ce62dd53a3ed814558ce15301edfb79c

Novel Object Exploration

File NameSizeChecksum (SHA256)
k1.mpg952524898d41b37f6f23560a1c1ce528544e63ebba1a794e9765fa8a26e4ec2f54f9de5
g2.mpg966860863f7449782864c25a1461c44e2d7c281ffc2f8feb3c73a85edd3738bf1f9d4e0

Rotarod

File NameSizeChecksum (SHA256)
014118604.txt49391639dfd5241bbfa4e7928e51ad1bb3e2f0e4289cbc3649bcd902987ed64561e
011032836.txt481e3be5b77f893c310cc9dabba03f3fb33aae01b82f264d39b4d2bf564914d1756
014119272.txt4949f9f59c0b815b7c8be2f3ab046b6fa27ee015caabee3d05f8fa3e1d250a466ad
011323513.txt49074cc50eba780e4a75f94d99f382b67759e86a29258ef4702c007f4fa2f4686ca
011041125.txt481b712c137d198113455655e930c35f6f046f4465e78d2afb639ccb24f5a2a5ace
014266032.txt483379875e8a2db7b7ebfa897fa621307f492548d02bc9349a3b96175badc310762
014123620.txt498d412266947eb11de5350a37ba1be94aadba995e87c5b73c73c58b2421493553a
014119301.txt4926df6b969c7c2a4c2264cdcc868598c23e61169e915c868c232b2e9e40661a1c0
014126011.txt493a9ea8b171107d07802d5993015148d25731f089a7cc5b6225a17ab5a4f9000d0
014262575.txt492c53fed954f6c567bb8f088524d0241ad468b6b8cb6a035f264a043f95d648d1d
011060536.txt497cacee1861d80dd5a84a3805aebe7d5dc838c9afe7b7801bd9d76a0d28010bd96
014115298.txt4869b0d982941221d99c111213ecac3d84b9fda1ed220fc50c74af2aaac080b29ad
011347856.txt495ce1140918547773815c29c9085f509cd5ccca84bcdc13073e959be4cc944b560
014258105.txt4930e4aff235b54e4602823979bc555b06fb4a93c1253af77aa03f93500f3ff7976
014260288.txt487ca6512d34ccf66607d4c002ae4ff7453271e2dcbc6be098f0cac095b87be0f42
011326855.txt489cc2f54d212f7b1f656734244774e4456a5566e74d3659f168e7d90549bdc5400
014113346.txt4898974c7d2d961202930e131c6507c905ec1656034295601065c1a18ecca62b291
014127786.txt4972a3ca6b2f434953cdc9f489391c49c0a113ed066ffec47d26735e12a7d09807e
011319081.txt49616912d9c8227b9363a65b0a8aac5e112f1e364dd986cd6e3f9757f0db9969b5f
011040259.txt495a4a79a35066fab3ccf8243512a0e4f526e0314867892a7c2797ec75382c3c397
011316805.txt4886e797ab90b97e9053afa2ebb4b746a71d78ad262680f37d92b0de11f25cd5b37
014115350.txt4958b414e47b65e0ec8a3c786f90f65e546823c76dece812b07b271700e5307cde4
014262585.txt48900d4354e8a82f1090e4c795b24cf0569662c64fa284de1721905e6f6d611a510
014265622.txt4821188ac4246c186925ea08b9713eeebe90b8ff2e5bcdc9e96dd6ef3eb88bd353b
014120634.txt4925325c1355fcf2855889cd3c05dad6f74d835dbc6bc523cef1851753820cf1108
014256120.txt49394def2796c37764e156922262f51bd2b104239bbea4398ab4ad497074597efe9
014262353.txt489fbc99df4aee70b0480b5b97cfc1c7b1c855c2c0ffdddf0303791f084ee0f4008
011069626.txt48554c510da231b3c7038c5c0928dc66ae442bee131aa3f52bd855708581ffed53c
014259773.txt4823e8a9adc421c8e64a51fd557e5e650ff781adda3719facd4e156fe7ec5f49425
014265777.txt502c2b70e505ddf29e037df4e3e7a5d6878fe0ab097f3dc090388101bd965f4fe4a
014265358.txt474c6e5aca463bdc62354d65ba6c7ae6862dcbd05a4446fb326b116b2c2c5dadd7b
011328026.txt491058821de4d14eac0a3affbab17a7f06a95135944b5225899a21c5f318c300989
011323577.txt488436d450d94cb62b0bbd03c0c3f8314fdbba77b47b914a56e66db18f31a1e288f
016029354.txt486b4bccc79ec1bd7caa5826c249adbe1fdf47d76e19f33a41ebbea376c3471f850
011368055.txt4886f470463bb9800049127ee0a4e2dcdeafae7340e0a63f503d2efa9dbe88b24a5

Fear Conditioning

File NameSizeChecksum (SHA256)
014256120.ffii1138946400527b8d14c2076812d0b86d725e8c994bf170f5b48e0b17131dd9e31f485d045
014262575.ffii1138946400e0fd7c509b642e55b0ab89b560fcb03dce8e0cd7cd23d302f7dc3b7d7ca613d
011040259.ffii1138946401d020f21c7367640f06eeb3d691dd0e0206b0634f030df4cd8c8d52b1f28e21b
011060536.ffii11389464023c11f1cffaadb5b119b2de1522f284967d74343c9ed4c8f7eaba482c14b458a
014118604.ffii113894640b92ded6d876cd73dbfc5bd02688ecec53d05b1794693af27a60d399abe7e0233
014120634.ffii113894640bebf552a94f7abb02248f82000f8ddd0203ccf12985f65ee9d80a19f1e9cfe37
014260288.ffii113894640f8435bc32a064e075981502b491d95329f72b558ec219a3b9603a50333c20eb0
014266032.ffii113894640beef19a0915290bffb8f928c444640f510367e7e9b48a0089385c92a55c98943
014265358.ffii1138946406c9e84d2319b5f31a6c5e6f51ce0012e267c3f28c65d7bf681f8263b4b9736a0
011319081.ffii113894640773b9ea87075381c68bc7a6f7638a8aa9b5b76ac3965b06bdc06e93b7586ebef
014262585.ffii11389464060d3c62cf6e5be93bae8e4cff82c32e28f54944a89adb97cc563b472153992fe
011347856.ffii1138946405e2699c7653bc133a9f6aaab3ef9c5cd9a5b3f7921fdc3994b0b735895fe2e32
011368055.ffii1138946403e5cbe060b219a64844bffbc16ea25e0693184bbc796d6268e94467a609864b3
011069626.ffii113894640a2905084e45962417eddf6e896d741844ead57b8835a836f1e55dc64c4171893
014115298.ffii111362040f24761e04913820153f4fd04a763a60ed64fb538ea48e8ad7649097b95b5d33d
011323577.ffii1138946402e7006eb225930440f447aa6502d0bc41a60b743347579a620e381d4fc8307dd
016029354.ffii1138946406de31c02a623e4092eb32b7546dabf88383dd4951b0403b41c12f9287271680e
014123620.ffii1138946401532531056e1210a9a31f8111d94b78154bc859dc1c205c6e12a48c2d4ec4f3a
011326855.ffii11389464007c0d95289998ac813ef57566013daac5b692b80f17ba9f5baa795e940502531
011323513.ffii113894640e8f92914999ba0324271faa60eec25273cb5d137c5cd5ce293473ff0031b60c7
014113346.ffii113894640e6da066c5982c8d42b37628a5dda960999f90d4723f0ba5d5b89a38ddfdb3a99
014115350.ffii11389464062fdc09f46b8c9be759627d977274cf671269f472d1e2aba028f31867a1343ef
014258105.ffii111362040b2ca6daaf811be9efb47f0892fc9e532096dc351313741934f633de1c26cf242
014259773.ffii1138946409696ccd4f0cf9717f1ead7af413bfda14487b33a353697832757408108013005
014119301.ffii11389464024e882f3e78068f13c7010836e08b1f00bc85cbe033e26de638383e2a777996e
014265777.ffii113894640e6c7d063775f1bf38f3fc7b53fcc3b83f050aff48612fc6e1fc2b16b13095036
014262353.ffii111362040f152e42a3a40a880cf6fa2a16e4bfc952d0a3569a32390c61391f0038b7a97c6
011328026.ffii1138946407a5dd9a9583cb619a8fe27b077272b613c63dbd4c0c89de60b78d5f617b65d4c
014126011.ffii1138946401a7d53f8711ad9ac232dc1a0a69c9b8904bfde7b7a606dacc2d89d3dda71d8a1
014119272.ffii1113620402d30649b5235b9284afb60b384b01813bf58f85d654a3ee011842ce174db7073
014265622.ffii1138946403efe79fa358a0d924f4b7a4dbd6273b55247663983fff1c15c6e673d5baf4b80
011041125.ffii113894640c67d41ccb1a512dbc764e13486d1b5cbead41d8884f604803d60c96cebab2adc
011316805.ffii11389464079bce153f4d19eec5e56c6eae54ba7f15567b4edcdd0d0acc242cad835c25cee
014127786.ffii11389464018dcd5a5534389b2b2b2f51260991f7025ae05f75eda80d7466f59fc0bc3114a
011032836.ffii113894640e7d99c3a8c0a45c696b7576ad727c0bf683b88b9b8c21658810f4d279f1ba4a1
File NameSizeChecksum (SHA256)
014115298.ffii8408232041af9954df7d4718b86f0ca2d90ef6180caff84c06bd146af26368b13856b313
011347856.ffii84082320d0173bc3b1e3828937ef0c0e2035cfef82f402fbcd6e7bc8cda4d213ca4ff7af
014265777.ffii84082320f8612847c39c51669260775e5eb884fe715cbb6d9c484c8c91d636fdfcb20a7a
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