G2C::Electrophysiology

GRIT knock-out mouse

S.G.N. Grant and the G2C Consortium

Corresponding email: Seth.Grant@ed.ac.uk  

 

Overview: Effect sizes (Cohen d) for 18 electrophysiology variables

Mutant slices showed medium overall electrophysiological difference from wildtype slices, with no electrophysiological variables significantly affected by this mutation. Note that in the theta burst analysis, the tenth burst is analysed as representative of individual burst amplitude.

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The G2CMine data warehouse provides slice group summaries and individual mouse observations from the GRIT knock-out line phenotyping.

 

Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude. PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio. Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4. LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 29 (8) 3267 (121) 19 (5) 3037 (80) 0.00048 *** 0.39
PPF at 50ms, ampl ratio % 29 (8) 172.7 (3.4) 19 (5) 167.8 (5) 0.41 0.43
Burst 1, PPF at 10ms, ampl ratio % 29 (8) 176.3 (7.1) 19 (5) 166.4 (9.6) 0.29 0.46
Burst 1, EPSP3 depr, ampl ratio % 29 (8) 60.6 (1.9) 19 (5) 61.5 (2.6) 0.079 0.83
Burst 1, ave amplitude µV 29 (8) 1377 (49) 19 (5) 1267 (35) 0.0038 ** 0.29
Burst 2, ave amplitude µV 29 (8) 2326 (97) 19 (5) 1925 (65) 0.0018 ** 0.069
Burst 3, ave amplitude µV 29 (8) 2525 (103) 19 (5) 2100 (70) 0.0021 ** 0.07
Burst 4, ave amplitude µV 29 (8) 2524 (99) 19 (5) 2116 (73) 0.0024 ** 0.071
Burst 5, ave amplitude µV 29 (8) 2451 (94) 19 (5) 2071 (74) 0.0015 ** 0.084
Burst 6, ave amplitude µV 29 (8) 2359 (87) 19 (5) 2004 (72) 0.0012 ** 0.086
Burst 7, ave amplitude µV 29 (8) 2269 (81) 19 (5) 1949 (71) 0.0017 ** 0.096
Burst 8, ave amplitude µV 29 (8) 2198 (77) 19 (5) 1907 (72) 0.0024 ** 0.11
Burst 9, ave amplitude µV 29 (8) 2142 (76) 19 (5) 1860 (72) 0.0038 ** 0.11
Burst 10, ave amplitude µV 29 (8) 2094 (76) 19 (5) 1844 (74) 0.0046 ** 0.16
Burst 2-4 ave amplitude vs Burst 1 % 29 (8) 179.3 (4.2) 19 (5) 162.5 (4.8) 0.14 0.054
Burst 8-10 ave amplitude vs Burst 2-4 % 29 (8) 87.6 (0.9) 19 (5) 91.4 (1.2) 0.21 0.054
LTP vs PTP, amplitude ratio % 29 (8) 84.1 (0.7) 19 (5) 83.3 (1.4) 0.067 0.66
LTP based on amplitude % 29 (8) 179.5 (4.7) 19 (5) 169.5 (4.4) 0.026 * 0.3

 

Basal Synaptic Transmission

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Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 29 (8) 3267 (121) 19 (5) 3037 (80) 0.00048 *** 0.39

 

Paired Pulse Facilitation

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Variables shown are: PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
PPF at 50ms, ampl ratio % 29 (8) 172.7 (3.4) 19 (5) 167.8 (5) 0.41 0.43

 

Theta Burst Stimulation

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Variables shown are: Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Burst 1, PPF at 10ms, ampl ratio % 29 (8) 176.3 (7.1) 19 (5) 166.4 (9.6) 0.29 0.46
Burst 1, EPSP3 depr, ampl ratio % 29 (8) 60.6 (1.9) 19 (5) 61.5 (2.6) 0.079 0.83
Burst 1, ave amplitude µV 29 (8) 1377 (49) 19 (5) 1267 (35) 0.0038 ** 0.29
Burst 2, ave amplitude µV 29 (8) 2326 (97) 19 (5) 1925 (65) 0.0018 ** 0.069
Burst 3, ave amplitude µV 29 (8) 2525 (103) 19 (5) 2100 (70) 0.0021 ** 0.07
Burst 4, ave amplitude µV 29 (8) 2524 (99) 19 (5) 2116 (73) 0.0024 ** 0.071
Burst 5, ave amplitude µV 29 (8) 2451 (94) 19 (5) 2071 (74) 0.0015 ** 0.084
Burst 6, ave amplitude µV 29 (8) 2359 (87) 19 (5) 2004 (72) 0.0012 ** 0.086
Burst 7, ave amplitude µV 29 (8) 2269 (81) 19 (5) 1949 (71) 0.0017 ** 0.096
Burst 8, ave amplitude µV 29 (8) 2198 (77) 19 (5) 1907 (72) 0.0024 ** 0.11
Burst 9, ave amplitude µV 29 (8) 2142 (76) 19 (5) 1860 (72) 0.0038 ** 0.11
Burst 10, ave amplitude µV 29 (8) 2094 (76) 19 (5) 1844 (74) 0.0046 ** 0.16
Burst 2-4 ave amplitude vs Burst 1 % 29 (8) 179.3 (4.2) 19 (5) 162.5 (4.8) 0.14 0.054
Burst 8-10 ave amplitude vs Burst 2-4 % 29 (8) 87.6 (0.9) 19 (5) 91.4 (1.2) 0.21 0.054

 

Long Term Potentiation

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Variables shown are: LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
LTP vs PTP, amplitude ratio % 29 (8) 84.1 (0.7) 19 (5) 83.3 (1.4) 0.067 0.66
LTP based on amplitude % 29 (8) 179.5 (4.7) 19 (5) 169.5 (4.4) 0.026 * 0.3

Hippocampal brain slices summarised by genotype, followed by a list of the animals from which they were prepared.

View experimental protocols.

 

Hippocampal Slice Electrophysiology Cohort Summary

GenotypeCount
WT8
mutant5

 

Individual Mice

Mouse IDGenotype
wAf9291d42aWT
wBa1875e4ebWT
wAcfae8a554WT
wA31a243979WT
wA80b60e33dWT
wB9dd42a941WT
wAc35dfa035WT
wA67005fbfeWT
mAa1875e4ebmutant
mB67005fbfemutant
mB9c356270dmutant
mAc03c2e8aamutant
mBc03c2e8aamutant

Field EPSP (Maximum)

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAa1875e4eb mutant 1 38A a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 2 52A a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 3 55B a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 4 52B a1875e4eb_slices_1-2-3-4.zip
mB67005fbfe mutant 2 43A 67005fbfe_slices_1-2-3-4.zip
mB67005fbfe mutant 5 58A 67005fbfe_slices_5-6-x-7.zip
mB67005fbfe mutant 6 53A 67005fbfe_slices_5-6-x-7.zip
mB67005fbfe mutant 7 62B 67005fbfe_slices_5-6-x-7.zip
mB9c356270d mutant 4 56A 9c356270d_slices_4-5-6-x.zip
mB9c356270d mutant 5 62A 9c356270d_slices_4-5-6-x.zip
mB9c356270d mutant 6 37B 9c356270d_slices_4-5-6-x.zip
mAc03c2e8aa mutant 1 46A c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 2 53A c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 3 46B c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 4 43B c03c2e8aa_slices_1-2-3-4.zip
mBc03c2e8aa mutant 5 12A c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 6 52A c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 7 37B c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 8 53B c03c2e8aa_slices_5-6-7-8.zip
wBa1875e4eb WT 5 47A a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 6 84A a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 7 46B a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 8 52B a1875e4eb_slice_5-6-7-8.zip
wA31a243979 WT 1 46A 31a243979_slices_1-2-3-x.zip
wA31a243979 WT 2 52A 31a243979_slices_1-2-3-x.zip
wA31a243979 WT 3 55B 31a243979_slices_1-2-3-x.zip
wB9dd42a941 WT 4 52B 9dd42a941_slices_1-2-3-4.zip
wB9dd42a941 WT 5 57A 9dd42a941_slices_5-6-x-x.zip
wB9dd42a941 WT 6 44A 9dd42a941_slices_5-6-x-x.zip
wA67005fbfe WT 1 46A 67005fbfe_slices_1-2-3-4.zip
wA67005fbfe WT 3 46B 67005fbfe_slices_1-2-3-4.zip
wA67005fbfe WT 4 54B 67005fbfe_slices_1-2-3-4.zip
wAc35dfa035 WT 1 46A c35dfa035_slices_1-2-x-3.zip
wAc35dfa035 WT 2 52A c35dfa035_slices_1-2-x-3.zip
wAc35dfa035 WT 3 52B c35dfa035_slices_1-2-x-3.zip
wA80b60e33d WT 1 15A 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 2 54A 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 3 12B 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 4 62B 80b60e33d_slices_1-2-3-4.zip
wAf9291d42a WT 2 87A f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 3 55B f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 4 62B f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 5 55A f9291d42a_slices_5-6-x-x.zip
wAcfae8a554 WT 1 15A cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 2 52A cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 3 46B cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 4 52B cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 5 58B cfae8a554_slices_x-x-5-x.zip

Paired Pulse Facilitation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAa1875e4eb mutant 1 38A a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 2 52A a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 3 55B a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 4 52B a1875e4eb_slices_1-2-3-4.zip
mB67005fbfe mutant 2 43A 67005fbfe_slices_1-2-3-4.zip
mB67005fbfe mutant 5 58A 67005fbfe_slices_5-6-x-7.zip
mB67005fbfe mutant 6 53A 67005fbfe_slices_5-6-x-7.zip
mB67005fbfe mutant 7 62B 67005fbfe_slices_5-6-x-7.zip
mB9c356270d mutant 4 56A 9c356270d_slices_4-5-6-x.zip
mB9c356270d mutant 5 62A 9c356270d_slices_4-5-6-x.zip
mB9c356270d mutant 6 37B 9c356270d_slices_4-5-6-x.zip
mAc03c2e8aa mutant 1 46A c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 2 53A c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 3 46B c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 4 43B c03c2e8aa_slices_1-2-3-4.zip
mBc03c2e8aa mutant 5 12A c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 6 52A c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 7 37B c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 8 53B c03c2e8aa_slices_5-6-7-8.zip
wBa1875e4eb WT 5 47A a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 6 84A a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 7 46B a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 8 52B a1875e4eb_slice_5-6-7-8.zip
wA31a243979 WT 1 46A 31a243979_slices_1-2-3-x.zip
wA31a243979 WT 2 52A 31a243979_slices_1-2-3-x.zip
wA31a243979 WT 3 55B 31a243979_slices_1-2-3-x.zip
wB9dd42a941 WT 4 52B 9dd42a941_slices_1-2-3-4.zip
wB9dd42a941 WT 5 57A 9dd42a941_slices_5-6-x-x.zip
wB9dd42a941 WT 6 44A 9dd42a941_slices_5-6-x-x.zip
wA67005fbfe WT 1 46A 67005fbfe_slices_1-2-3-4.zip
wA67005fbfe WT 3 46B 67005fbfe_slices_1-2-3-4.zip
wA67005fbfe WT 4 54B 67005fbfe_slices_1-2-3-4.zip
wAc35dfa035 WT 1 46A c35dfa035_slices_1-2-x-3.zip
wAc35dfa035 WT 2 52A c35dfa035_slices_1-2-x-3.zip
wAc35dfa035 WT 3 52B c35dfa035_slices_1-2-x-3.zip
wA80b60e33d WT 1 15A 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 2 54A 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 3 12B 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 4 62B 80b60e33d_slices_1-2-3-4.zip
wAf9291d42a WT 2 87A f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 3 55B f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 4 62B f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 5 55A f9291d42a_slices_5-6-x-x.zip
wAcfae8a554 WT 1 15A cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 2 52A cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 3 46B cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 4 52B cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 5 58B cfae8a554_slices_x-x-5-x.zip

Long Term Potentiation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAa1875e4eb mutant 1 38A a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 2 52A a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 3 55B a1875e4eb_slices_1-2-3-4.zip
mAa1875e4eb mutant 4 52B a1875e4eb_slices_1-2-3-4.zip
mB67005fbfe mutant 2 43A 67005fbfe_slices_1-2-3-4.zip
mB67005fbfe mutant 5 58A 67005fbfe_slices_5-6-x-7.zip
mB67005fbfe mutant 6 53A 67005fbfe_slices_5-6-x-7.zip
mB67005fbfe mutant 7 62B 67005fbfe_slices_5-6-x-7.zip
mB9c356270d mutant 4 56A 9c356270d_slices_4-5-6-x.zip
mB9c356270d mutant 5 62A 9c356270d_slices_4-5-6-x.zip
mB9c356270d mutant 6 37B 9c356270d_slices_4-5-6-x.zip
mAc03c2e8aa mutant 1 46A c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 2 53A c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 3 46B c03c2e8aa_slices_1-2-3-4.zip
mAc03c2e8aa mutant 4 43B c03c2e8aa_slices_1-2-3-4.zip
mBc03c2e8aa mutant 5 12A c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 6 52A c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 7 37B c03c2e8aa_slices_5-6-7-8.zip
mBc03c2e8aa mutant 8 53B c03c2e8aa_slices_5-6-7-8.zip
wBa1875e4eb WT 5 47A a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 6 84A a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 7 46B a1875e4eb_slice_5-6-7-8.zip
wBa1875e4eb WT 8 52B a1875e4eb_slice_5-6-7-8.zip
wA31a243979 WT 1 46A 31a243979_slices_1-2-3-x.zip
wA31a243979 WT 2 52A 31a243979_slices_1-2-3-x.zip
wA31a243979 WT 3 55B 31a243979_slices_1-2-3-x.zip
wB9dd42a941 WT 4 52B 9dd42a941_slices_1-2-3-4.zip
wB9dd42a941 WT 5 57A 9dd42a941_slices_5-6-x-x.zip
wB9dd42a941 WT 6 44A 9dd42a941_slices_5-6-x-x.zip
wA67005fbfe WT 1 46A 67005fbfe_slices_1-2-3-4.zip
wA67005fbfe WT 3 46B 67005fbfe_slices_1-2-3-4.zip
wA67005fbfe WT 4 54B 67005fbfe_slices_1-2-3-4.zip
wAc35dfa035 WT 1 46A c35dfa035_slices_1-2-x-3.zip
wAc35dfa035 WT 2 52A c35dfa035_slices_1-2-x-3.zip
wAc35dfa035 WT 3 52B c35dfa035_slices_1-2-x-3.zip
wA80b60e33d WT 1 15A 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 2 54A 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 3 12B 80b60e33d_slices_1-2-3-4.zip
wA80b60e33d WT 4 62B 80b60e33d_slices_1-2-3-4.zip
wAf9291d42a WT 2 87A f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 3 55B f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 4 62B f9291d42a_slices_1-2-3-4.zip
wAf9291d42a WT 5 55A f9291d42a_slices_5-6-x-x.zip
wAcfae8a554 WT 1 15A cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 2 52A cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 3 46B cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 4 52B cfae8a554_slices_1-2-3-4.zip
wAcfae8a554 WT 5 58B cfae8a554_slices_x-x-5-x.zip

Data Files

File NameSizeChecksum (SHA256)
c03c2e8aa_slices_5-6-7-8.zip4471467432451b0a7e3f1e4f3c745fddaf513e0e0ea67bc30dbeaac3108bebe4a669788a
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