G2C::Electrophysiology

Glu1 knock-out mouse

S.G.N. Grant and the G2C Consortium

Corresponding email: Seth.Grant@ed.ac.uk  

 

Overview: Effect sizes (Cohen d) for 18 electrophysiology variables

Mutant slices showed little overall electrophysiological difference from wildtype slices. With heterozygous genotype and only one electrophysiological variable significantly affected in mutant slices, this mutation was deemed haplosufficient. Note that in the theta burst analysis, the tenth burst is analysed as representative of individual burst amplitude.

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The G2CMine data warehouse provides slice group summaries and individual mouse observations from the Glu1 knock-out line phenotyping.

 

Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude. PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio. Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4. LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 21 (7) 3020 (120) 19 (7) 3000 (170) 0.48 0.94
PPF at 50ms, ampl ratio % 21 (7) 173.8 (3.5) 19 (7) 177.3 (3.4) 0.55 0.48
Burst 1, PPF at 10ms, ampl ratio % 21 (7) 187.8 (5.9) 19 (7) 193.5 (5.1) 0.2 0.55
Burst 1, EPSP3 depr, ampl ratio % 21 (7) 67.7 (3.1) 19 (7) 63 (3.2) 0.077 0.42
Burst 1, ave amplitude µV 21 (7) 1292 (52) 19 (7) 1250 (58) 0.29 0.63
Burst 2, ave amplitude µV 21 (7) 2021 (88) 19 (7) 2026 (97) 0.37 0.97
Burst 3, ave amplitude µV 21 (7) 2259 (98) 19 (7) 2277 (113) 0.51 0.9
Burst 4, ave amplitude µV 21 (7) 2333 (96) 19 (7) 2343 (103) 0.36 0.95
Burst 5, ave amplitude µV 21 (7) 2298 (92) 19 (7) 2323 (100) 0.19 0.88
Burst 6, ave amplitude µV 21 (7) 2224 (87) 19 (7) 2246 (97) 0.13 0.89
Burst 7, ave amplitude µV 21 (7) 2158 (85) 19 (7) 2193 (97) 0.096 0.83
Burst 8, ave amplitude µV 21 (7) 2089 (84) 19 (7) 2131 (99) 0.099 0.8
Burst 9, ave amplitude µV 21 (7) 2029 (84) 19 (7) 2066 (98) 0.1 0.82
Burst 10, ave amplitude µV 21 (7) 1990 (87) 19 (7) 2016 (99) 0.11 0.87
Burst 2-4 ave amplitude vs Burst 1 % 21 (7) 171.3 (2.6) 19 (7) 178.1 (3.4) 0.53 0.13
Burst 8-10 ave amplitude vs Burst 2-4 % 21 (7) 92.9 (1.6) 19 (7) 94 (1.9) 0.11 0.72
LTP vs PTP, amplitude ratio % 21 (7) 81.1 (1) 19 (7) 77.3 (1.1) 0.33 0.042 *
LTP based on amplitude % 21 (7) 173 (5.1) 19 (7) 173.8 (4.4) 0.58 0.9

 

Basal Synaptic Transmission

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Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 21 (7) 3020 (120) 19 (7) 3000 (170) 0.48 0.94

 

Paired Pulse Facilitation

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Variables shown are: PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
PPF at 50ms, ampl ratio % 21 (7) 173.8 (3.5) 19 (7) 177.3 (3.4) 0.55 0.48

 

Theta Burst Stimulation

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Variables shown are: Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Burst 1, PPF at 10ms, ampl ratio % 21 (7) 187.8 (5.9) 19 (7) 193.5 (5.1) 0.2 0.55
Burst 1, EPSP3 depr, ampl ratio % 21 (7) 67.7 (3.1) 19 (7) 63 (3.2) 0.077 0.42
Burst 1, ave amplitude µV 21 (7) 1292 (52) 19 (7) 1250 (58) 0.29 0.63
Burst 2, ave amplitude µV 21 (7) 2021 (88) 19 (7) 2026 (97) 0.37 0.97
Burst 3, ave amplitude µV 21 (7) 2259 (98) 19 (7) 2277 (113) 0.51 0.9
Burst 4, ave amplitude µV 21 (7) 2333 (96) 19 (7) 2343 (103) 0.36 0.95
Burst 5, ave amplitude µV 21 (7) 2298 (92) 19 (7) 2323 (100) 0.19 0.88
Burst 6, ave amplitude µV 21 (7) 2224 (87) 19 (7) 2246 (97) 0.13 0.89
Burst 7, ave amplitude µV 21 (7) 2158 (85) 19 (7) 2193 (97) 0.096 0.83
Burst 8, ave amplitude µV 21 (7) 2089 (84) 19 (7) 2131 (99) 0.099 0.8
Burst 9, ave amplitude µV 21 (7) 2029 (84) 19 (7) 2066 (98) 0.1 0.82
Burst 10, ave amplitude µV 21 (7) 1990 (87) 19 (7) 2016 (99) 0.11 0.87
Burst 2-4 ave amplitude vs Burst 1 % 21 (7) 171.3 (2.6) 19 (7) 178.1 (3.4) 0.53 0.13
Burst 8-10 ave amplitude vs Burst 2-4 % 21 (7) 92.9 (1.6) 19 (7) 94 (1.9) 0.11 0.72

 

Long Term Potentiation

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Variables shown are: LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
LTP vs PTP, amplitude ratio % 21 (7) 81.1 (1) 19 (7) 77.3 (1.1) 0.33 0.042 *
LTP based on amplitude % 21 (7) 173 (5.1) 19 (7) 173.8 (4.4) 0.58 0.9

Hippocampal brain slices summarised by genotype, followed by a list of the animals from which they were prepared.

View experimental protocols.

 

Hippocampal Slice Electrophysiology Cohort Summary

GenotypeCount
WT7
mutant7

 

Individual Mice

Mouse IDGenotype
wB43427f885WT
wBa92f615ecWT
wA9250f6332WT
wAa92f615ecWT
wAdddb0794cWT
wA43427f885WT
wA863f06377WT
mA95a94d85fmutant
mAaab10df51mutant
mAbb406959dmutant
mBaab10df51mutant
mB863f06377mutant
mBbb406959dmutant
mB9250f6332mutant

Field EPSP (Maximum)

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mB863f06377 mutant 5 61A 863f06377_slices_4-5-6-7.zip
mB863f06377 mutant 6 38B 863f06377_slices_4-5-6-7.zip
mB863f06377 mutant 7 43B 863f06377_slices_4-5-6-7.zip
mB9250f6332 mutant 5 52A 9250f6332_slices_4-5-6-7.zip
mB9250f6332 mutant 6 55B 9250f6332_slices_4-5-6-7.zip
mB9250f6332 mutant 7 51B 9250f6332_slices_4-5-6-7.zip
mBbb406959d mutant 1 15A bb406959d_slices_1-2-3-x.zip
mAbb406959d mutant 2 43A bb406959d_slices_1-2-3-x.zip
mAbb406959d mutant 3 38B bb406959d_slices_1-2-3-x.zip
mBbb406959d mutant 4 55A Not available
mBbb406959d mutant 5 43A Not available
mBbb406959d mutant 6 46B Not available
mA95a94d85f mutant 1 12A 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 2 61A 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 3 12B 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 4 15A 95a94d85f_slices_4-x-5-x.zip
mA95a94d85f mutant 5 15B 95a94d85f_slices_4-x-5-x.zip
mAaab10df51 mutant 1 55A aab10df51_slices_1-2-3-x.zip
mAaab10df51 mutant 2 52A aab10df51_slices_1-2-3-x.zip
mAaab10df51 mutant 3 46B aab10df51_slices_1-2-3-x.zip
mBaab10df51 mutant 5 62A aab10df51_slices_4-5-6-7.zip
mBaab10df51 mutant 6 46B aab10df51_slices_4-5-6-7.zip
mBaab10df51 mutant 7 52B aab10df51_slices_4-5-6-7.zip
wA863f06377 WT 1 46A 863f06377_slices_1-2-3-x.zip
wA863f06377 WT 2 62A 863f06377_slices_1-2-3-x.zip
wA863f06377 WT 3 46B 863f06377_slices_1-2-3-x.zip
wA9250f6332 WT 1 15A 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 2 52A 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 3 38B 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 4 55A 9250f6332_slices_4-5-6-7.zip
wA43427f885 WT 1 55A 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 2 52A 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 3 46B 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 4 12A 43427f885_slices_4-5-6-7.zip
wB43427f885 WT 6 67B 43427f885_slices_4-5-6-7.zip
wB43427f885 WT 7 52B 43427f885_slices_4-5-6-7.zip
wBa92f615ec WT 1 55A a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 2 41A a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 3 12B a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 4 55A a92f615ec_slices_4-5-6-7.zip
wBa92f615ec WT 5 61A a92f615ec_slices_4-5-6-7.zip
wBa92f615ec WT 6 12B a92f615ec_slices_4-5-6-7.zip
wAdddb0794c WT 1 55A dddb0794c_slices_1-2-3-x.zip
wAdddb0794c WT 2 62A dddb0794c_slices_1-2-3-x.zip

Paired Pulse Facilitation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mB863f06377 mutant 5 61A 863f06377_slices_4-5-6-7.zip
mB863f06377 mutant 6 38B 863f06377_slices_4-5-6-7.zip
mB863f06377 mutant 7 43B 863f06377_slices_4-5-6-7.zip
mB9250f6332 mutant 5 52A 9250f6332_slices_4-5-6-7.zip
mB9250f6332 mutant 6 55B 9250f6332_slices_4-5-6-7.zip
mB9250f6332 mutant 7 51B 9250f6332_slices_4-5-6-7.zip
mBbb406959d mutant 1 15A bb406959d_slices_1-2-3-x.zip
mAbb406959d mutant 2 43A bb406959d_slices_1-2-3-x.zip
mAbb406959d mutant 3 38B bb406959d_slices_1-2-3-x.zip
mBbb406959d mutant 4 55A Not available
mBbb406959d mutant 5 43A Not available
mBbb406959d mutant 6 46B Not available
mA95a94d85f mutant 1 12A 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 2 61A 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 3 12B 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 4 15A 95a94d85f_slices_4-x-5-x.zip
mA95a94d85f mutant 5 15B 95a94d85f_slices_4-x-5-x.zip
mAaab10df51 mutant 1 55A aab10df51_slices_1-2-3-x.zip
mAaab10df51 mutant 2 52A aab10df51_slices_1-2-3-x.zip
mAaab10df51 mutant 3 46B aab10df51_slices_1-2-3-x.zip
mBaab10df51 mutant 5 62A aab10df51_slices_4-5-6-7.zip
mBaab10df51 mutant 6 46B aab10df51_slices_4-5-6-7.zip
mBaab10df51 mutant 7 52B aab10df51_slices_4-5-6-7.zip
wA863f06377 WT 1 46A 863f06377_slices_1-2-3-x.zip
wA863f06377 WT 2 62A 863f06377_slices_1-2-3-x.zip
wA863f06377 WT 3 46B 863f06377_slices_1-2-3-x.zip
wA9250f6332 WT 1 15A 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 2 52A 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 3 38B 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 4 55A 9250f6332_slices_4-5-6-7.zip
wA43427f885 WT 1 55A 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 2 52A 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 3 46B 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 4 12A 43427f885_slices_4-5-6-7.zip
wB43427f885 WT 6 67B 43427f885_slices_4-5-6-7.zip
wB43427f885 WT 7 52B 43427f885_slices_4-5-6-7.zip
wBa92f615ec WT 1 55A a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 2 41A a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 3 12B a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 4 55A a92f615ec_slices_4-5-6-7.zip
wBa92f615ec WT 5 61A a92f615ec_slices_4-5-6-7.zip
wBa92f615ec WT 6 12B a92f615ec_slices_4-5-6-7.zip
wAdddb0794c WT 1 55A dddb0794c_slices_1-2-3-x.zip
wAdddb0794c WT 2 62A dddb0794c_slices_1-2-3-x.zip

Long Term Potentiation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mB863f06377 mutant 5 61A 863f06377_slices_4-5-6-7.zip
mB863f06377 mutant 6 38B 863f06377_slices_4-5-6-7.zip
mB863f06377 mutant 7 43B 863f06377_slices_4-5-6-7.zip
mB9250f6332 mutant 5 52A 9250f6332_slices_4-5-6-7.zip
mB9250f6332 mutant 6 55B 9250f6332_slices_4-5-6-7.zip
mB9250f6332 mutant 7 51B 9250f6332_slices_4-5-6-7.zip
mBbb406959d mutant 1 15A bb406959d_slices_1-2-3-x.zip
mAbb406959d mutant 2 43A bb406959d_slices_1-2-3-x.zip
mAbb406959d mutant 3 38B bb406959d_slices_1-2-3-x.zip
mBbb406959d mutant 4 55A Not available
mBbb406959d mutant 5 43A Not available
mBbb406959d mutant 6 46B Not available
mA95a94d85f mutant 1 12A 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 2 61A 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 3 12B 95a94d85f_slices_1-2-3-x.zip
mA95a94d85f mutant 4 15A 95a94d85f_slices_4-x-5-x.zip
mA95a94d85f mutant 5 15B 95a94d85f_slices_4-x-5-x.zip
mAaab10df51 mutant 1 55A aab10df51_slices_1-2-3-x.zip
mAaab10df51 mutant 2 52A aab10df51_slices_1-2-3-x.zip
mAaab10df51 mutant 3 46B aab10df51_slices_1-2-3-x.zip
mBaab10df51 mutant 5 62A aab10df51_slices_4-5-6-7.zip
mBaab10df51 mutant 6 46B aab10df51_slices_4-5-6-7.zip
mBaab10df51 mutant 7 52B aab10df51_slices_4-5-6-7.zip
wA863f06377 WT 1 46A 863f06377_slices_1-2-3-x.zip
wA863f06377 WT 2 62A 863f06377_slices_1-2-3-x.zip
wA863f06377 WT 3 46B 863f06377_slices_1-2-3-x.zip
wA9250f6332 WT 1 15A 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 2 52A 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 3 38B 9250f6332_slices_1-2-3-x.zip
wA9250f6332 WT 4 55A 9250f6332_slices_4-5-6-7.zip
wA43427f885 WT 1 55A 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 2 52A 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 3 46B 43427f885_slices_1-2-3-x.zip
wA43427f885 WT 4 12A 43427f885_slices_4-5-6-7.zip
wB43427f885 WT 6 67B 43427f885_slices_4-5-6-7.zip
wB43427f885 WT 7 52B 43427f885_slices_4-5-6-7.zip
wBa92f615ec WT 1 55A a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 2 41A a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 3 12B a92f615ec_slices_1-2-3-x.zip
wAa92f615ec WT 4 55A a92f615ec_slices_4-5-6-7.zip
wBa92f615ec WT 5 61A a92f615ec_slices_4-5-6-7.zip
wBa92f615ec WT 6 12B a92f615ec_slices_4-5-6-7.zip
wAdddb0794c WT 1 55A dddb0794c_slices_1-2-3-x.zip
wAdddb0794c WT 2 62A dddb0794c_slices_1-2-3-x.zip

Data Files

File NameSizeChecksum (SHA256)
43427f885_slices_4-5-6-7.zip578404768c23b78550981345195c0c95ae39268a043016e74c9c146ee8d9b66e363a27c9
9250f6332_slices_4-5-6-7.zip511755948a2520077194a60d1d149b452a75f15b7823199e5cf2af0b9c6135730d2ae62a
863f06377_slices_4-5-6-7.zip5408756777f815723089b6bafd7142511ea5f2c9e558ad1cdd803805421a3565781e7210
aab10df51_slices_1-2-3-x.zip41454336623c97cb6efd51fef3a0458ca1d197f7be7a6166efb934b3028d5775d3cd8498
aab10df51_slices_4-5-6-7.zip442408292ffe521a1144129281342dad87edaebd0fa4c5eadac30fe46c7da9240113a6de
bb406959d_slices_1-2-3-x.zip33460404b36a889ebf09f93e81fdab4eb7b7a629c8429bf72fe801ef9f3089c34a7687f8
a92f615ec_slices_4-5-6-7.zip546811662d1f716800576b5b780c059ffae6511e0d02adf9b0170b972ca7c7481dd8f327
863f06377_slices_1-2-3-x.zip42886403718e590db4f63ea1a2b462a3378f3bfe5e1a3944dc139c6ef9a69276bba17048
dddb0794c_slices_1-2-3-x.zip3574646327af4169f755529005e2aeddbd181916d9c497709021e418859e0e2fc9558380
95a94d85f_slices_4-x-5-x.zip481747776d0dc43e67933c4b2cacc260fc2576f05d0afb3df7a7eaaa2ae4b275e01f2172
95a94d85f_slices_1-2-3-x.zip38851674832e3a0f953f52c4f8014574892bfd06710ca4e102051c15100a719027020939
a92f615ec_slices_1-2-3-x.zip43265716b22c5b0dcf13f5a0c8a6bdd92d7f20684375b2e43c5ea3dc11f2fdbc53d63752
43427f885_slices_1-2-3-x.zip4336795244614d1594d0bb4edc9f087d008ae27f323276aca43abf043796f34caff4bd1b
9250f6332_slices_1-2-3-x.zip400908642e65cdb2d74bc83803b966ab4fe7055e0de0c536a693d8df5a432c1eedd03b46
© G2C 2014. The Genes to Cognition Programme received funding from The Wellcome Trust and the EU FP7 Framework Programmes:
EUROSPIN (FP7-HEALTH-241498), SynSys (FP7-HEALTH-242167) and GENCODYS (FP7-HEALTH-241995).

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