G2C::Electrophysiology

CYFIP1 knock-out mouse

S.G.N. Grant and the G2C Consortium

Corresponding email: Seth.Grant@ed.ac.uk  

 

Overview: Effect sizes (Cohen d) for 18 electrophysiology variables

Mutant slices showed little overall electrophysiological difference from wildtype slices, with two of nine variables significantly impacted by this mutation. In the theta burst stimulation experiment, two electrophysiological variables of five were significantly impacted in mutants. Basal synaptic transmission, paired pulse facilitation and long term potentiation experiments were unaffected. Note that in the theta burst analysis, the tenth burst is analysed as representative of individual burst amplitude. Definitions of variables may be found below.

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The G2CMine data warehouse provides slice group summaries and individual mouse observations from the CYFIP1 knock-out line phenotyping.

 

Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude. PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio. Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4. LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 36 (12) 3290 (110) 23 (8) 3260 (180) 0.048 * 0.91
PPF at 50ms, ampl ratio % 36 (12) 172.4 (2.3) 23 (8) 182.2 (3.5) 0.072 0.064
Burst 1, PPF at 10ms, ampl ratio % 36 (12) 183.2 (3.6) 23 (8) 204.7 (5.5) 0.2 0.0084 **
Burst 1, EPSP3 depr, ampl ratio % 36 (12) 65.3 (1.5) 23 (8) 57.5 (2.4) 0.1 0.024 *
Burst 1, ave amplitude µV 36 (12) 1347 (39) 23 (8) 1345 (72) 0.18 0.98
Burst 2, ave amplitude µV 36 (12) 2132 (73) 23 (8) 2118 (109) 0.1 0.93
Burst 3, ave amplitude µV 36 (12) 2396 (77) 23 (8) 2397 (120) 0.083 1
Burst 4, ave amplitude µV 36 (12) 2453 (75) 23 (8) 2455 (117) 0.076 0.99
Burst 5, ave amplitude µV 36 (12) 2409 (70) 23 (8) 2411 (108) 0.098 0.99
Burst 6, ave amplitude µV 36 (12) 2340 (67) 23 (8) 2342 (102) 0.099 0.99
Burst 7, ave amplitude µV 36 (12) 2250 (62) 23 (8) 2268 (96) 0.11 0.89
Burst 8, ave amplitude µV 36 (12) 2173 (59) 23 (8) 2188 (92) 0.082 0.9
Burst 9, ave amplitude µV 36 (12) 2104 (57) 23 (8) 2127 (89) 0.06 0.86
Burst 10, ave amplitude µV 36 (12) 2050 (58) 23 (8) 2076 (88) 0.079 0.83
Burst 2-4 ave amplitude vs Burst 1 % 36 (12) 173.6 (2.5) 23 (8) 174.6 (3.5) 0.012 * 0.86
Burst 8-10 ave amplitude vs Burst 2-4 % 36 (12) 91.2 (1.1) 23 (8) 92.2 (1.1) 0.044 * 0.64
LTP vs PTP, amplitude ratio % 36 (12) 80.5 (0.6) 23 (8) 80.5 (0.9) 0.33 0.97
LTP based on amplitude % 36 (12) 176 (2.1) 23 (8) 175.7 (2.7) 0.6 0.93

 

Basal Synaptic Transmission

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Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 36 (12) 3290 (110) 23 (8) 3260 (180) 0.048 * 0.91

 

Paired Pulse Facilitation

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Variables shown are: PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
PPF at 50ms, ampl ratio % 36 (12) 172.4 (2.3) 23 (8) 182.2 (3.5) 0.072 0.064

 

Theta Burst Stimulation

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Variables shown are: Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Burst 1, PPF at 10ms, ampl ratio % 36 (12) 183.2 (3.6) 23 (8) 204.7 (5.5) 0.2 0.0084 **
Burst 1, EPSP3 depr, ampl ratio % 36 (12) 65.3 (1.5) 23 (8) 57.5 (2.4) 0.1 0.024 *
Burst 1, ave amplitude µV 36 (12) 1347 (39) 23 (8) 1345 (72) 0.18 0.98
Burst 2, ave amplitude µV 36 (12) 2132 (73) 23 (8) 2118 (109) 0.1 0.93
Burst 3, ave amplitude µV 36 (12) 2396 (77) 23 (8) 2397 (120) 0.083 1
Burst 4, ave amplitude µV 36 (12) 2453 (75) 23 (8) 2455 (117) 0.076 0.99
Burst 5, ave amplitude µV 36 (12) 2409 (70) 23 (8) 2411 (108) 0.098 0.99
Burst 6, ave amplitude µV 36 (12) 2340 (67) 23 (8) 2342 (102) 0.099 0.99
Burst 7, ave amplitude µV 36 (12) 2250 (62) 23 (8) 2268 (96) 0.11 0.89
Burst 8, ave amplitude µV 36 (12) 2173 (59) 23 (8) 2188 (92) 0.082 0.9
Burst 9, ave amplitude µV 36 (12) 2104 (57) 23 (8) 2127 (89) 0.06 0.86
Burst 10, ave amplitude µV 36 (12) 2050 (58) 23 (8) 2076 (88) 0.079 0.83
Burst 2-4 ave amplitude vs Burst 1 % 36 (12) 173.6 (2.5) 23 (8) 174.6 (3.5) 0.012 * 0.86
Burst 8-10 ave amplitude vs Burst 2-4 % 36 (12) 91.2 (1.1) 23 (8) 92.2 (1.1) 0.044 * 0.64

 

Long Term Potentiation

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Variables shown are: LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
LTP vs PTP, amplitude ratio % 36 (12) 80.5 (0.6) 23 (8) 80.5 (0.9) 0.33 0.97
LTP based on amplitude % 36 (12) 176 (2.1) 23 (8) 175.7 (2.7) 0.6 0.93

Hippocampal brain slices summarised by genotype, followed by a list of the animals from which they were prepared.

View experimental protocols.

 

Hippocampal Slice Electrophysiology Cohort Summary

GenotypeCount
WT12
mutant8

 

Individual Mice

Mouse IDGenotype
wB54531f179WT
wAc5c799fd9WT
wB4de54cd8fWT
wBbba6be190WT
wBd35a301ffWT
wA7281829fbWT
wBe9bb0baf7WT
wA54531f179WT
wA091288bdeWT
wA21b0bf5acWT
wA99f30f498WT
wB35a8d46aaWT
mB99f30f498mutant
mAe9bb0baf7mutant
mBc5c799fd9mutant
mB091288bdemutant
mA4de54cd8fmutant
mA35a8d46aamutant
mAbba6be190mutant
mAd35a301ffmutant

Field EPSP (Maximum)

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAd35a301ff mutant 2 46B d35a301ff_slices_1-2-3-4.zip
mAd35a301ff mutant 8 52B d35a301ff_slices_5-6-7-8.zip
mAbba6be190 mutant 2 53B bba6be190_slices_1-2-3-4.zip
mAbba6be190 mutant 3 12C bba6be190_slices_1-2-3-4.zip
mAbba6be190 mutant 4 44D bba6be190_slices_1-2-3-4.zip
mB091288bde mutant 6 42A 091288bde_slices_5-6-7-8.zip
mB091288bde mutant 7 12B 091288bde_slices_5-6-7-8.zip
mBc5c799fd9 mutant 6 52A c5c799fd9_slices_5-6-7-8.zip
mBc5c799fd9 mutant 7 55B c5c799fd9_slices_5-6-7-8.zip
mB99f30f498 mutant 5 53A 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 6 42A 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 7 46B 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 8 52B 99f30f498_slices_5-6-7-8.zip
mA35a8d46aa mutant 2 53B 35a8d46aa_slices_1-2-3-4.zip
mA35a8d46aa mutant 3 61C 35a8d46aa_slices_1-2-3-4.zip
mA35a8d46aa mutant 4 53D 35a8d46aa_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 1 62A e9bb0baf7_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 4 52D e9bb0baf7_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 7 55B e9bb0baf7_slices_5-6-7-8.zip
mA4de54cd8f mutant 1 41A 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 2 41B 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 3 61C 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 4 42D 4de54cd8f_slices_1-2-3-4.zip
wBd35a301ff WT 3 46C d35a301ff_slices_1-2-3-4.zip
wBd35a301ff WT 4 54D d35a301ff_slices_1-2-3-4.zip
wBd35a301ff WT 6 41A d35a301ff_slices_5-6-7-8.zip
wBd35a301ff WT 7 55B d35a301ff_slices_5-6-7-8.zip
wBbba6be190 WT 1 53A bba6be190_slices_1-2-3-4.zip
wBbba6be190 WT 6 61A bba6be190_slices_5-6-7-8.zip
wBbba6be190 WT 7 44B bba6be190_slices_5-6-7-8.zip
wBbba6be190 WT 8 52B bba6be190_slices_5-6-7-8.zip
wA091288bde WT 1 52A 091288bde_slices_1-2-3-4.zip
wA091288bde WT 2 53B 091288bde_slices_1-2-3-4.zip
wA091288bde WT 3 55C 091288bde_slices_1-2-3-4.zip
wA091288bde WT 4 43D 091288bde_slices_1-2-3-4.zip
wAc5c799fd9 WT 2 12B c5c799fd9_slices_1-2-3-4.zip
wAc5c799fd9 WT 3 62C c5c799fd9_slices_1-2-3-4.zip
wA99f30f498 WT 2 61B 99f30f498_slices_1-2-3-4.zip
wA99f30f498 WT 3 58C 99f30f498_slices_1-2-3-4.zip
wB35a8d46aa WT 1 53A 35a8d46aa_slices_1-2-3-4.zip
wA21b0bf5ac WT 3 41C 21b0bf5ac_slices_1-2-3-4.zip
wA21b0bf5ac WT 4 53D 21b0bf5ac_slices_1-2-3-4.zip
wBe9bb0baf7 WT 8 52B e9bb0baf7_slices_5-6-7-8.zip
wB4de54cd8f WT 5 12A 4de54cd8f_slices_5-6-7-8.zip
wB4de54cd8f WT 6 62A 4de54cd8f_slices_5-6-7-8.zip
wB4de54cd8f WT 7 46B 4de54cd8f_slices_5-6-7-8.zip
wA54531f179 WT 1 41A 54531f179_slices_1-2-3-4.zip
wA54531f179 WT 2 44B 54531f179_slices_1-2-3-4.zip
wA54531f179 WT 3 44C 54531f179_slices_1-2-3-4.zip
wA54531f179 WT 4 54D 54531f179_slices_1-2-3-4.zip
wB54531f179 WT 5 55A 54531f179_slices_5-6-7-8.zip
wB54531f179 WT 6 52A 54531f179_slices_5-6-7-8.zip
wB54531f179 WT 7 46B 54531f179_slices_5-6-7-8.zip
wB54531f179 WT 8 41B 54531f179_slices_5-6-7-8.zip
wA7281829fb WT 1 12A 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 2 53B 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 3 61C 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 4 12D 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 5 44A 7281829fb_slices_5-6-7-8.zip

Paired Pulse Facilitation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAd35a301ff mutant 2 46B d35a301ff_slices_1-2-3-4.zip
mAd35a301ff mutant 8 52B d35a301ff_slices_5-6-7-8.zip
mAbba6be190 mutant 2 53B bba6be190_slices_1-2-3-4.zip
mAbba6be190 mutant 3 12C bba6be190_slices_1-2-3-4.zip
mAbba6be190 mutant 4 44D bba6be190_slices_1-2-3-4.zip
mB091288bde mutant 6 42A 091288bde_slices_5-6-7-8.zip
mB091288bde mutant 7 12B 091288bde_slices_5-6-7-8.zip
mBc5c799fd9 mutant 6 52A c5c799fd9_slices_5-6-7-8.zip
mBc5c799fd9 mutant 7 55B c5c799fd9_slices_5-6-7-8.zip
mB99f30f498 mutant 5 53A 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 6 42A 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 7 46B 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 8 52B 99f30f498_slices_5-6-7-8.zip
mA35a8d46aa mutant 2 53B 35a8d46aa_slices_1-2-3-4.zip
mA35a8d46aa mutant 3 61C 35a8d46aa_slices_1-2-3-4.zip
mA35a8d46aa mutant 4 53D 35a8d46aa_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 1 62A e9bb0baf7_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 4 52D e9bb0baf7_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 7 55B e9bb0baf7_slices_5-6-7-8.zip
mA4de54cd8f mutant 1 41A 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 2 41B 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 3 61C 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 4 42D 4de54cd8f_slices_1-2-3-4.zip
wBd35a301ff WT 3 46C d35a301ff_slices_1-2-3-4.zip
wBd35a301ff WT 4 54D d35a301ff_slices_1-2-3-4.zip
wBd35a301ff WT 6 41A d35a301ff_slices_5-6-7-8.zip
wBd35a301ff WT 7 55B d35a301ff_slices_5-6-7-8.zip
wBbba6be190 WT 1 53A bba6be190_slices_1-2-3-4.zip
wBbba6be190 WT 6 61A bba6be190_slices_5-6-7-8.zip
wBbba6be190 WT 7 44B bba6be190_slices_5-6-7-8.zip
wBbba6be190 WT 8 52B bba6be190_slices_5-6-7-8.zip
wA091288bde WT 1 52A 091288bde_slices_1-2-3-4.zip
wA091288bde WT 2 53B 091288bde_slices_1-2-3-4.zip
wA091288bde WT 3 55C 091288bde_slices_1-2-3-4.zip
wA091288bde WT 4 43D 091288bde_slices_1-2-3-4.zip
wAc5c799fd9 WT 2 12B c5c799fd9_slices_1-2-3-4.zip
wAc5c799fd9 WT 3 62C c5c799fd9_slices_1-2-3-4.zip
wA99f30f498 WT 2 61B 99f30f498_slices_1-2-3-4.zip
wA99f30f498 WT 3 58C 99f30f498_slices_1-2-3-4.zip
wB35a8d46aa WT 1 53A 35a8d46aa_slices_1-2-3-4.zip
wA21b0bf5ac WT 3 41C 21b0bf5ac_slices_1-2-3-4.zip
wA21b0bf5ac WT 4 53D 21b0bf5ac_slices_1-2-3-4.zip
wBe9bb0baf7 WT 8 52B e9bb0baf7_slices_5-6-7-8.zip
wB4de54cd8f WT 5 12A 4de54cd8f_slices_5-6-7-8.zip
wB4de54cd8f WT 6 62A 4de54cd8f_slices_5-6-7-8.zip
wB4de54cd8f WT 7 46B 4de54cd8f_slices_5-6-7-8.zip
wA54531f179 WT 1 41A 54531f179_slices_1-2-3-4.zip
wA54531f179 WT 2 44B 54531f179_slices_1-2-3-4.zip
wA54531f179 WT 3 44C 54531f179_slices_1-2-3-4.zip
wA54531f179 WT 4 54D 54531f179_slices_1-2-3-4.zip
wB54531f179 WT 5 55A 54531f179_slices_5-6-7-8.zip
wB54531f179 WT 6 52A 54531f179_slices_5-6-7-8.zip
wB54531f179 WT 7 46B 54531f179_slices_5-6-7-8.zip
wB54531f179 WT 8 41B 54531f179_slices_5-6-7-8.zip
wA7281829fb WT 1 12A 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 2 53B 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 3 61C 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 4 12D 7281829fb_slices_1-2-3-4.zip
wA7281829fb WT 5 44A 7281829fb_slices_5-6-7-8.zip

Long Term Potentiation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAd35a301ff mutant 2 46B d35a301ff_slices_1-2-3-4.zip
mAd35a301ff mutant 8 52B d35a301ff_slices_5-6-7-8.zip
mAbba6be190 mutant 2 53B bba6be190_slices_1-2-3-4.zip
mAbba6be190 mutant 3 12C bba6be190_slices_1-2-3-4.zip
mAbba6be190 mutant 4 44D bba6be190_slices_1-2-3-4.zip
mB091288bde mutant 6 42A 091288bde_slices_5-6-7-8.zip
mB091288bde mutant 7 12B 091288bde_slices_5-6-7-8.zip
mBc5c799fd9 mutant 6 52A c5c799fd9_slices_5-6-7-8.zip
mBc5c799fd9 mutant 7 55B c5c799fd9_slices_5-6-7-8.zip
mB99f30f498 mutant 5 53A 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 6 42A 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 7 46B 99f30f498_slices_5-6-7-8.zip
mB99f30f498 mutant 8 52B 99f30f498_slices_5-6-7-8.zip
mA35a8d46aa mutant 2 53B 35a8d46aa_slices_1-2-3-4.zip
mA35a8d46aa mutant 3 61C 35a8d46aa_slices_1-2-3-4.zip
mA35a8d46aa mutant 4 53D 35a8d46aa_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 1 62A e9bb0baf7_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 4 52D e9bb0baf7_slices_1-2-3-4.zip
mAe9bb0baf7 mutant 7 55B e9bb0baf7_slices_5-6-7-8.zip
mA4de54cd8f mutant 1 41A 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 2 41B 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 3 61C 4de54cd8f_slices_1-2-3-4.zip
mA4de54cd8f mutant 4 42D 4de54cd8f_slices_1-2-3-4.zip
wBd35a301ff WT 3 46C d35a301ff_slices_1-2-3-4.zip
wBd35a301ff WT 4 54D d35a301ff_slices_1-2-3-4.zip
wBd35a301ff WT 6 41A d35a301ff_slices_5-6-7-8.zip
wBd35a301ff WT 7 55B d35a301ff_slices_5-6-7-8.zip
wBbba6be190 WT 1 53A bba6be190_slices_1-2-3-4.zip
wBbba6be190 WT 6 61A bba6be190_slices_5-6-7-8.zip
wBbba6be190 WT 7 44B bba6be190_slices_5-6-7-8.zip
wBbba6be190 WT 8 52B bba6be190_slices_5-6-7-8.zip
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