G2C::Genetics
PSD-95-SH3 point mouse
S.G.N. Grant and the G2C Consortium
Corresponding email: Seth.Grant@ed.ac.uk
G2CMine Data Warehouse
Dlg4 @ G2CMine |
Genetic and Genomic Information
Gene symbol | Dlg4 |
MGI ID | MGI:1277959 |
G2Cdb mouse | G00000004 |
Ensembl mouse | ENSMUSG00000020886 |
G2Cdb human | G00000029 |
Ensembl human | ENSG00000132535 |
G2CMine Data Warehouse
G2CMine integrates the scientific findings of the Genes to Cognition Programme that utilised neuroproteomics, psychiatric genetics, high-throughput mouse gene targeting combined with behavioural and electrophysiological phenotyping and informatics in order to develop a general strategy for understanding cognition at the molecular, cellular and systems neuroscience levels.
G2CMine provides comprehensive Gene Ontology, Mammalian Phenotype Ontology, Human Phenotype Ontology, UniProt, genetic and protein interactions, and regional mouse brain expression results, together with the phenotyping results of the G2C Programme.
Mutation
Generation of Dlg4 mutant mice described in Arbuckle et al (2010)
Genotyping
Dlg4 genotyping described in Arbuckle et al (2010)
Expression
Dlg4 expression described in Arbuckle et al (2010)
Breeding
Birth of PSD-95-SH3-/- departed only slightly from Mendelian ratios with 17% of offspring being homozygous knockouts. Genotypes of 3-week-old pups from PSD-95-SH3+/- intercrosses identified 48 wt, 72 PSD-95-SH3+/-, and 25 PSD-95-SH3-/- progeny (Χ2 p=0.026). Male and female PSD-95-SH3-/- mice exhibited no gross abnormalities. Backcrosses onto the C57BL/6J background were used to maintain the colony and to generate homozygous and wildtype mice to study.
Overview
Mutant mice showed little overall behavioural difference from wildtypes, with two of 16 behaviour variables significantly impacted in these mutants. In the elevated plus maze task, one behavioural variable, EPM total distance, was significantly increased in mutants. In the rotarod task, one behavioural variable, RR learning, was significantly increased in mutants. Open field/novel object exploration, fear learning, contextual memory and cued memory tasks were unaffected. Definitions of variables may be found below.
The G2CMine data warehouse provides cohort summaries and individual mouse observations from the PSD-95-SH3 point line phenotyping.Variables shown are: EPM total distance, Total distance (cm) travelled in any arm or central zone of the EPM. EPM max speed, Maximum speed (cm/s) travelled in any arm or central zone of the EPM. EPM % time in open, Percentage of time in the open or closed arms of the EPM spent in open arms. EPM time in centre, Total time (s) spent in the central zone of the EPM. EPM max speed, open vs closed, Difference between the maximum speed (cm/s) observed in the open arms and the closed arms of the EPM. OF, NOE total distance, Total distance travelled (log₁₀ cm) during initial exposure to the open field and in presence of the novel object. NOE vs OF distance travelled, Difference in distance travelled (cm) in presence of the novel object and during initial exposure to open field. RR naive fall time, Fall time on accelerating rotarod (log₁₀ s), naive performance in session 1. RR learning, Learning on rotarod, measured as increase in fall time per trial (s/trial) in session 1. RR memory, Memory on rotarod, measured as excess fall time at middle of session 2 relative to middle of session 1. Fear learning, trial effect, Fear learning, measured as extra % time freezing before third trial compared to % time freezing before first trial. Fear learning, tone effect, Fear learning, measured as increase in % time freezing due to third tone compared to increase in % time freezing due to first tone. Contextual memory, mean, Contextual memory, measured as difference in % time freezing during first 120 s re-exposure to the box compared to first 120 s in the box on previous day. Contextual memory, change, Contextual memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the box. Cued memory, mean, Cued memory, measured as increase in % time spent freezing during 120 s of tone re-exposure compared to increase in % time spent freezing during initial tone on previous day. Cued memory, change, Cued memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the tone.
Variable | Units | Wildtype M (n=10) | Wildtype F (n=11) | Mutant M (n=11) | Mutant F (n=10) | P(sex×mutation) | P(mutation) |
---|---|---|---|---|---|---|---|
EPM total distance | cm | 1267 (41) | 1237 (83) | 1436 (68) | 1378 (100) | 0.85 | 0.049 * |
EPM max speed | cm/s | 24.2 (1.1) | 25.1 (1.1) | 25.8 (1) | 26.5 (1.3) | 0.94 | 0.19 |
EPM % time in open | % | 15.8 (2.6) | 12.9 (2.9) | 16.4 (3) | 12.7 (3) | 0.89 | 0.95 |
EPM time in centre | s | 58.6 (3.2) | 57.5 (6.8) | 63.6 (4.2) | 59.6 (6.2) | 0.78 | 0.51 |
EPM max speed, open vs closed | cm/s | -6.2 (1.3) | -7.4 (1.3) | -5.3 (1.4) | -9 (2.3) | 0.46 | 0.83 |
OF, NOE total distance | log10 cm | 3.64 (0.02) | 3.71 (0.02) | 3.69 (0.02) | 3.75 (0.04) | 0.87 | 0.13 |
NOE vs OF distance travelled | cm | -1010 (210) | -1040 (180) | -1130 (210) | -800 (170) | 0.36 | 0.76 |
RR naive fall time | log10 s | 1.47 (0.1) | 1.83 (0.07) | 1.42 (0.08) | 1.59 (0.08) | 0.26 | 0.084 |
RR learning | s/trial | 6.4 (1.9) | 5.2 (1.1) | 8.2 (1.2) | 12.4 (2.2) | 0.099 | 0.0089 ** |
RR memory | s | 24.2 (5.1) | 22.1 (6.3) | 25.3 (4.8) | 45.1 (11.2) | 0.14 | 0.1 |
Fear learning, trial effect | % freezing | 42.1 (3.7) | 35.3 (5.7) | 38.9 (6.7) | 48.7 (8.1) | 0.19 | 0.43 |
Fear learning, tone effect | % freezing | -3.1 (5.8) | -1.8 (5.3) | -0.9 (3) | 2.9 (5.8) | 0.8 | 0.5 |
Contextual memory, mean | % freezing | 41.2 (5.9) | 21.4 (8.1) | 22.5 (3.8) | 29.6 (7.5) | 0.047 * | 0.43 |
Contextual memory, change | % freezing | 7.2 (9.6) | 9.1 (7.2) | 2.2 (6.6) | 5.6 (8.7) | 0.92 | 0.6 |
Cued memory, mean | % freezing | 7.9 (9.7) | 10 (5.4) | 18.2 (5.3) | 21.9 (9.1) | 0.91 | 0.15 |
Cued memory, change | % freezing | 10.5 (7) | -11.3 (6.7) | -8.8 (5.2) | -4 (5.3) | 0.035 * | 0.33 |
Elevated Plus Maze
Variables shown are: EPM total distance, Total distance (cm) travelled in any arm or central zone of the EPM. EPM max speed, Maximum speed (cm/s) travelled in any arm or central zone of the EPM. EPM % time in open, Percentage of time in the open or closed arms of the EPM spent in open arms. EPM time in centre, Total time (s) spent in the central zone of the EPM. EPM max speed, open vs closed, Difference between the maximum speed (cm/s) observed in the open arms and the closed arms of the EPM.
Variable | Units | Wildtype M (n=10) | Wildtype F (n=11) | Mutant M (n=11) | Mutant F (n=10) | P(sex×mutation) | P(mutation) |
---|---|---|---|---|---|---|---|
EPM total distance | cm | 1267 (41) | 1237 (83) | 1436 (68) | 1378 (100) | 0.85 | 0.049 * |
EPM max speed | cm/s | 24.2 (1.1) | 25.1 (1.1) | 25.8 (1) | 26.5 (1.3) | 0.94 | 0.19 |
EPM % time in open | % | 15.8 (2.6) | 12.9 (2.9) | 16.4 (3) | 12.7 (3) | 0.89 | 0.95 |
EPM time in centre | s | 58.6 (3.2) | 57.5 (6.8) | 63.6 (4.2) | 59.6 (6.2) | 0.78 | 0.51 |
EPM max speed, open vs closed | cm/s | -6.2 (1.3) | -7.4 (1.3) | -5.3 (1.4) | -9 (2.3) | 0.46 | 0.83 |
Open Field/Novel Object
Variables shown are: OF, NOE total distance, Total distance travelled (log₁₀ cm) during initial exposure to the open field and in presence of the novel object. NOE vs OF distance travelled, Difference in distance travelled (cm) in presence of the novel object and during initial exposure to open field.
Variable | Units | Wildtype M (n=10) | Wildtype F (n=11) | Mutant M (n=11) | Mutant F (n=10) | P(sex×mutation) | P(mutation) |
---|---|---|---|---|---|---|---|
OF, NOE total distance | log10 cm | 3.64 (0.02) | 3.71 (0.02) | 3.69 (0.02) | 3.75 (0.04) | 0.87 | 0.13 |
NOE vs OF distance travelled | cm | -1010 (210) | -1040 (180) | -1130 (210) | -800 (170) | 0.36 | 0.76 |
Rotarod
Variables shown are: RR naive fall time, Fall time on accelerating rotarod (log₁₀ s), naive performance in session 1. RR learning, Learning on rotarod, measured as increase in fall time per trial (s/trial) in session 1. RR memory, Memory on rotarod, measured as excess fall time at middle of session 2 relative to middle of session 1.
Variable | Units | Wildtype M (n=10) | Wildtype F (n=11) | Mutant M (n=11) | Mutant F (n=10) | P(sex×mutation) | P(mutation) |
---|---|---|---|---|---|---|---|
RR naive fall time | log10 s | 1.47 (0.1) | 1.83 (0.07) | 1.42 (0.08) | 1.59 (0.08) | 0.26 | 0.084 |
RR learning | s/trial | 6.4 (1.9) | 5.2 (1.1) | 8.2 (1.2) | 12.4 (2.2) | 0.099 | 0.0089 ** |
RR memory | s | 24.2 (5.1) | 22.1 (6.3) | 25.3 (4.8) | 45.1 (11.2) | 0.14 | 0.1 |
Fear Conditioning
Variables shown are: Fear learning, trial effect, Fear learning, measured as extra % time freezing before third trial compared to % time freezing before first trial. Fear learning, tone effect, Fear learning, measured as increase in % time freezing due to third tone compared to increase in % time freezing due to first tone. Contextual memory, mean, Contextual memory, measured as difference in % time freezing during first 120 s re-exposure to the box compared to first 120 s in the box on previous day. Contextual memory, change, Contextual memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the box. Cued memory, mean, Cued memory, measured as increase in % time spent freezing during 120 s of tone re-exposure compared to increase in % time spent freezing during initial tone on previous day. Cued memory, change, Cued memory, measured as increase in % time spent freezing from first time bin of 30 s to fourth bin of 30 s during 120 s re-exposure to the tone.
Variable | Units | Wildtype M (n=10) | Wildtype F (n=11) | Mutant M (n=11) | Mutant F (n=10) | P(sex×mutation) | P(mutation) |
---|---|---|---|---|---|---|---|
Fear learning, trial effect | % freezing | 42.1 (3.7) | 35.3 (5.7) | 38.9 (6.7) | 48.7 (8.1) | 0.19 | 0.43 |
Fear learning, tone effect | % freezing | -3.1 (5.8) | -1.8 (5.3) | -0.9 (3) | 2.9 (5.8) | 0.8 | 0.5 |
Contextual memory, mean | % freezing | 41.2 (5.9) | 21.4 (8.1) | 22.5 (3.8) | 29.6 (7.5) | 0.047 * | 0.43 |
Contextual memory, change | % freezing | 7.2 (9.6) | 9.1 (7.2) | 2.2 (6.6) | 5.6 (8.7) | 0.92 | 0.6 |
Cued memory, mean | % freezing | 7.9 (9.7) | 10 (5.4) | 18.2 (5.3) | 21.9 (9.1) | 0.91 | 0.15 |
Cued memory, change | % freezing | 10.5 (7) | -11.3 (6.7) | -8.8 (5.2) | -4 (5.3) | 0.035 * | 0.33 |
- Overview
- Basal Synaptic Transmission
- Paired Pulse Facilitation
- Theta Burst Stimulation
- Long Term Potentiation
Overview
Mutant slices showed little overall electrophysiological difference from wildtype slices, with no electrophysiological variables significantly affected by this mutation. Note that in the theta burst analysis, the tenth burst is analysed as representative of individual burst amplitude.
The G2CMine data warehouse provides slice group summaries and individual mouse observations from the PSD-95-SH3 point line phenotyping.Basal Synaptic Transmission
Paired Pulse Facilitation
Theta Burst Stimulation
Long Term Potentiation
Behaviour raw data
Animals | View |
Elevated Plus Maze | View |
Open Field | View |
Novel Object Exploration | View |
Rotarod | View |
Hippocampal slice electrophysiology raw data
Animals and Brain slices | View |
Field EPSP (Maximum) | View |
Paired Pulse Facilitation | View |
Long Term Potentiation | View |
Data Files | View |