Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign102 - back to list
Summary
./analyse_probe_search_results : Tue Jan 31 11:33:29 2006
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign102 assembly : NCBIM34 bias : 5prime chromosome : 11 id : 93 strand : 1 ------------- Design window length: 2046bp All jobs for probe design are successful - total: 26 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 512 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 5prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 512/512 Putative probes that are unique : 300/512 Putative probes exceeding selection criteria : 512/512 (both unique and not unique) Putative probes with successfully-picked primers: 512/512 Identified 177 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
88218 | 1300 | 6500 | - | 0 |
88219 | 1300 | 6500 | - | 65 |
88220 | 1300 | 6500 | - | 130 |
88221 | 1300 | 6500 | - | 195 |
88230 | 1250 | 6250 | - | 0 |
88231 | 1250 | 6250 | - | 62 |
88232 | 1250 | 6250 | - | 124 |
88233 | 1250 | 6250 | - | 186 |
88234 | 1250 | 6250 | - | 248 |
88243 | 1200 | 6000 | - | 0 |
88244 | 1200 | 6000 | - | 60 |
88245 | 1200 | 6000 | - | 120 |
88246 | 1200 | 6000 | - | 180 |
88247 | 1200 | 6000 | - | 240 |
88248 | 1200 | 6000 | - | 300 |
88258 | 1150 | 5750 | - | 0 |
88259 | 1150 | 5750 | - | 57 |
88260 | 1150 | 5750 | - | 114 |
88261 | 1150 | 5750 | - | 171 |
88262 | 1150 | 5750 | - | 228 |
88263 | 1150 | 5750 | - | 285 |
88264 | 1150 | 5750 | - | 342 |
88274 | 1100 | 5500 | - | 0 |
88275 | 1100 | 5500 | - | 55 |
88276 | 1100 | 5500 | - | 110 |
88277 | 1100 | 5500 | - | 165 |
88278 | 1100 | 5500 | - | 220 |
88279 | 1100 | 5500 | - | 275 |
88280 | 1100 | 5500 | - | 330 |
88281 | 1100 | 5500 | - | 385 |
88292 | 1050 | 5250 | - | 0 |
88293 | 1050 | 5250 | - | 52 |
88294 | 1050 | 5250 | - | 104 |
88295 | 1050 | 5250 | - | 156 |
88296 | 1050 | 5250 | - | 208 |
88297 | 1050 | 5250 | - | 260 |
88298 | 1050 | 5250 | - | 312 |
88299 | 1050 | 5250 | - | 364 |
88300 | 1050 | 5250 | - | 416 |
88301 | 1050 | 5250 | - | 468 |
88312 | 1000 | 5000 | - | 0 |
88313 | 1000 | 5000 | - | 50 |
88314 | 1000 | 5000 | - | 100 |
88315 | 1000 | 5000 | - | 150 |
88316 | 1000 | 5000 | - | 200 |
88317 | 1000 | 5000 | - | 250 |
88318 | 1000 | 5000 | - | 300 |
88319 | 1000 | 5000 | - | 350 |
88320 | 1000 | 5000 | - | 400 |
88321 | 1000 | 5000 | - | 450 |
88322 | 1000 | 5000 | - | 500 |
88333 | 950 | 4750 | - | 0 |
88334 | 950 | 4750 | - | 47 |
88335 | 950 | 4750 | - | 94 |
88336 | 950 | 4750 | - | 141 |
88337 | 950 | 4750 | - | 188 |
88338 | 950 | 4750 | - | 235 |
88339 | 950 | 4750 | - | 282 |
88340 | 950 | 4750 | - | 329 |
88341 | 950 | 4750 | - | 376 |
88342 | 950 | 4750 | - | 423 |
88343 | 950 | 4750 | - | 470 |
88344 | 950 | 4750 | - | 517 |
88345 | 950 | 4750 | - | 564 |
88357 | 900 | 4500 | - | 0 |
88358 | 900 | 4500 | - | 45 |
88359 | 900 | 4500 | - | 90 |
88360 | 900 | 4500 | - | 135 |
88361 | 900 | 4500 | - | 180 |
88362 | 900 | 4500 | - | 225 |
88363 | 900 | 4500 | - | 270 |
88364 | 900 | 4500 | - | 315 |
88365 | 900 | 4500 | - | 360 |
88366 | 900 | 4500 | - | 405 |
88367 | 900 | 4500 | - | 450 |
88368 | 900 | 4500 | - | 495 |
88369 | 900 | 4500 | - | 540 |
88370 | 900 | 4500 | - | 585 |
88371 | 900 | 4500 | - | 630 |
88383 | 850 | 4250 | - | 0 |
88384 | 850 | 4250 | - | 42 |
88385 | 850 | 4250 | - | 84 |
88386 | 850 | 4250 | - | 126 |
88387 | 850 | 4250 | - | 168 |
88388 | 850 | 4250 | - | 210 |
88389 | 850 | 4250 | - | 252 |
88390 | 850 | 4250 | - | 294 |
88391 | 850 | 4250 | - | 336 |
88392 | 850 | 4250 | - | 378 |
88393 | 850 | 4250 | - | 420 |
88394 | 850 | 4250 | - | 462 |
88395 | 850 | 4250 | - | 504 |
88396 | 850 | 4250 | - | 546 |
88397 | 850 | 4250 | - | 588 |
88398 | 850 | 4250 | - | 630 |
88399 | 850 | 4250 | - | 672 |
88412 | 800 | 4000 | - | 0 |
88413 | 800 | 4000 | - | 40 |
88414 | 800 | 4000 | - | 80 |
88415 | 800 | 4000 | - | 120 |
88416 | 800 | 4000 | - | 160 |
88417 | 800 | 4000 | - | 200 |
88418 | 800 | 4000 | - | 240 |
88419 | 800 | 4000 | - | 280 |
88420 | 800 | 4000 | - | 320 |
88421 | 800 | 4000 | - | 360 |
88422 | 800 | 4000 | - | 400 |
88423 | 800 | 4000 | - | 440 |
88424 | 800 | 4000 | - | 480 |
88425 | 800 | 4000 | - | 520 |
88426 | 800 | 4000 | - | 560 |
88427 | 800 | 4000 | - | 600 |
88428 | 800 | 4000 | - | 640 |
88429 | 800 | 4000 | - | 680 |
88430 | 800 | 4000 | - | 720 |
88444 | 750 | 3750 | - | 0 |
88445 | 750 | 3750 | - | 37 |
88446 | 750 | 3750 | - | 74 |
88447 | 750 | 3750 | - | 111 |
88448 | 750 | 3750 | - | 148 |
88449 | 750 | 3750 | - | 185 |
88450 | 750 | 3750 | - | 222 |
88451 | 750 | 3750 | - | 259 |
88452 | 750 | 3750 | - | 296 |
88453 | 750 | 3750 | - | 333 |
88454 | 750 | 3750 | - | 370 |
88455 | 750 | 3750 | - | 407 |
88456 | 750 | 3750 | - | 444 |
88457 | 750 | 3750 | - | 481 |
88458 | 750 | 3750 | - | 518 |
88459 | 750 | 3750 | - | 555 |
88460 | 750 | 3750 | - | 592 |
88461 | 750 | 3750 | - | 629 |
88462 | 750 | 3750 | - | 666 |
88463 | 750 | 3750 | - | 703 |
88464 | 750 | 3750 | - | 740 |
88465 | 750 | 3750 | - | 777 |
88480 | 700 | 3500 | - | 0 |
88481 | 700 | 3500 | - | 35 |
88482 | 700 | 3500 | - | 70 |
88483 | 700 | 3500 | - | 105 |
88484 | 700 | 3500 | - | 140 |
88485 | 700 | 3500 | - | 175 |
88486 | 700 | 3500 | - | 210 |
88487 | 700 | 3500 | - | 245 |
88488 | 700 | 3500 | - | 280 |
88489 | 700 | 3500 | - | 315 |
88490 | 700 | 3500 | - | 350 |
88491 | 700 | 3500 | - | 385 |
88492 | 700 | 3500 | - | 420 |
88493 | 700 | 3500 | - | 455 |
88494 | 700 | 3500 | - | 490 |
88495 | 700 | 3500 | - | 525 |
88496 | 700 | 3500 | - | 560 |
88497 | 700 | 3500 | - | 595 |
88498 | 700 | 3500 | - | 630 |
88499 | 700 | 3500 | - | 665 |
88500 | 700 | 3500 | - | 700 |
88501 | 700 | 3500 | - | 735 |
88502 | 700 | 3500 | - | 770 |
88503 | 700 | 3500 | - | 805 |
88519 | 650 | 3250 | - | 0 |
88520 | 650 | 3250 | - | 32 |
88521 | 650 | 3250 | - | 64 |
88522 | 650 | 3250 | - | 96 |
88523 | 650 | 3250 | - | 128 |
88524 | 650 | 3250 | - | 160 |
88525 | 650 | 3250 | - | 192 |
88526 | 650 | 3250 | - | 224 |
88527 | 650 | 3250 | - | 256 |
88528 | 650 | 3250 | - | 288 |
88529 | 650 | 3250 | - | 320 |
88530 | 650 | 3250 | - | 352 |
88531 | 650 | 3250 | - | 384 |
88532 | 650 | 3250 | - | 416 |
88533 | 650 | 3250 | - | 448 |
88534 | 650 | 3250 | - | 480 |
88535 | 650 | 3250 | - | 512 |
88536 | 650 | 3250 | - | 544 |
88537 | 650 | 3250 | - | 576 |
88538 | 650 | 3250 | - | 608 |
88539 | 650 | 3250 | - | 640 |
88540 | 650 | 3250 | - | 672 |
88541 | 650 | 3250 | - | 704 |
88542 | 650 | 3250 | - | 736 |
88543 | 650 | 3250 | - | 768 |
88544 | 650 | 3250 | - | 800 |
88545 | 650 | 3250 | - | 832 |
88546 | 650 | 3250 | - | 864 |
88563 | 600 | 3000 | - | 0 |
88564 | 600 | 3000 | - | 30 |
88565 | 600 | 3000 | - | 60 |
88566 | 600 | 3000 | - | 90 |
88567 | 600 | 3000 | - | 120 |
88568 | 600 | 3000 | - | 150 |
88569 | 600 | 3000 | - | 180 |
88570 | 600 | 3000 | - | 210 |
88571 | 600 | 3000 | - | 240 |
88572 | 600 | 3000 | - | 270 |
88573 | 600 | 3000 | - | 300 |
88574 | 600 | 3000 | - | 330 |
88575 | 600 | 3000 | - | 360 |
88576 | 600 | 3000 | - | 390 |
88577 | 600 | 3000 | - | 420 |
88578 | 600 | 3000 | - | 450 |
88579 | 600 | 3000 | - | 480 |
88580 | 600 | 3000 | - | 510 |
88581 | 600 | 3000 | - | 540 |
88582 | 600 | 3000 | - | 570 |
88583 | 600 | 3000 | - | 600 |
88584 | 600 | 3000 | - | 630 |
88585 | 600 | 3000 | - | 660 |
88586 | 600 | 3000 | - | 690 |
88587 | 600 | 3000 | - | 720 |
88588 | 600 | 3000 | - | 750 |
88589 | 600 | 3000 | - | 780 |
88590 | 600 | 3000 | - | 810 |
88591 | 600 | 3000 | - | 840 |
88592 | 600 | 3000 | - | 870 |
88593 | 600 | 3000 | - | 900 |
88594 | 600 | 3000 | - | 930 |
88612 | 550 | 2750 | - | 0 |
88613 | 550 | 2750 | - | 27 |
88614 | 550 | 2750 | - | 54 |
88615 | 550 | 2750 | - | 81 |
88616 | 550 | 2750 | - | 108 |
88617 | 550 | 2750 | - | 135 |
88618 | 550 | 2750 | - | 162 |
88619 | 550 | 2750 | - | 189 |
88620 | 550 | 2750 | - | 216 |
88621 | 550 | 2750 | - | 243 |
88622 | 550 | 2750 | - | 270 |
88623 | 550 | 2750 | - | 297 |
88624 | 550 | 2750 | - | 324 |
88625 | 550 | 2750 | - | 351 |
88626 | 550 | 2750 | - | 378 |
88627 | 550 | 2750 | - | 405 |
88628 | 550 | 2750 | - | 432 |
88629 | 550 | 2750 | - | 459 |
88630 | 550 | 2750 | - | 486 |
88631 | 550 | 2750 | - | 513 |
88632 | 550 | 2750 | - | 540 |
88633 | 550 | 2750 | - | 567 |
88634 | 550 | 2750 | - | 594 |
88635 | 550 | 2750 | - | 621 |
88636 | 550 | 2750 | - | 648 |
88637 | 550 | 2750 | - | 675 |
88638 | 550 | 2750 | - | 702 |
88639 | 550 | 2750 | - | 729 |
88640 | 550 | 2750 | - | 756 |
88641 | 550 | 2750 | - | 783 |
88642 | 550 | 2750 | - | 810 |
88643 | 550 | 2750 | - | 837 |
88644 | 550 | 2750 | - | 864 |
88645 | 550 | 2750 | - | 891 |
88646 | 550 | 2750 | - | 918 |
88647 | 550 | 2750 | - | 945 |
88648 | 550 | 2750 | - | 972 |
88668 | 500 | 2500 | - | 0 |
88669 | 500 | 2500 | - | 25 |
88670 | 500 | 2500 | - | 50 |
88671 | 500 | 2500 | - | 75 |
88672 | 500 | 2500 | - | 100 |
88673 | 500 | 2500 | - | 125 |
88674 | 500 | 2500 | - | 150 |
88675 | 500 | 2500 | - | 175 |
88676 | 500 | 2500 | - | 200 |
88677 | 500 | 2500 | - | 225 |
88678 | 500 | 2500 | - | 250 |
88679 | 500 | 2500 | - | 275 |
88680 | 500 | 2500 | - | 300 |
88681 | 500 | 2500 | - | 325 |
88682 | 500 | 2500 | - | 350 |
88683 | 500 | 2500 | - | 375 |
88684 | 500 | 2500 | - | 400 |
88685 | 500 | 2500 | - | 425 |
88686 | 500 | 2500 | - | 450 |
88687 | 500 | 2500 | - | 475 |
88688 | 500 | 2500 | - | 500 |
88689 | 500 | 2500 | - | 525 |
88690 | 500 | 2500 | - | 550 |
88691 | 500 | 2500 | - | 575 |
88692 | 500 | 2500 | - | 600 |
88693 | 500 | 2500 | - | 625 |
88694 | 500 | 2500 | - | 650 |
88695 | 500 | 2500 | - | 675 |
88696 | 500 | 2500 | - | 700 |
88697 | 500 | 2500 | - | 725 |
88698 | 500 | 2500 | - | 750 |
88699 | 500 | 2500 | - | 775 |
88700 | 500 | 2500 | - | 800 |
88701 | 500 | 2500 | - | 825 |
88702 | 500 | 2500 | - | 850 |
88703 | 500 | 2500 | - | 875 |
88704 | 500 | 2500 | - | 900 |
88705 | 500 | 2500 | - | 925 |
88706 | 500 | 2500 | - | 950 |
88707 | 500 | 2500 | - | 975 |
88708 | 500 | 2500 | - | 1000 |
88709 | 500 | 2500 | - | 1025 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
88222 | 1300 | 43.0 | 6500 | 0.7 | 260 | 41.7 |
88265 | 1150 | 38.1 | 5750 | 0.6 | 399 | 36.9 |
88282 | 1100 | 36.4 | 5500 | - | 440 | 36.4 |
88266 | 1150 | 35.7 | 5750 | 0.8 | 456 | 34.1 |
88223 | 1300 | 37.6 | 6500 | 1.8 | 325 | 34.0 |
88250 | 1200 | 37.3 | 6000 | 1.7 | 420 | 33.9 |
88236 | 1250 | 37.2 | 6250 | 1.8 | 372 | 33.7 |
88224 | 1300 | 36.7 | 6500 | 1.8 | 390 | 33.2 |
88225 | 1300 | 36.7 | 6500 | 1.8 | 455 | 33.2 |
88226 | 1300 | 36.7 | 6500 | 1.8 | 520 | 33.2 |
88227 | 1300 | 36.7 | 6500 | 1.8 | 585 | 33.2 |
88228 | 1300 | 36.7 | 6500 | 1.8 | 650 | 33.2 |
88229 | 1300 | 36.7 | 6500 | 1.8 | 715 | 33.2 |
88302 | 1050 | 34.8 | 5250 | 0.9 | 520 | 33.1 |
88283 | 1100 | 34.6 | 5500 | 0.8 | 495 | 33.0 |
88257 | 1200 | 33.9 | 6000 | 1.9 | 840 | 30.1 |
88324 | 1000 | 31.4 | 5000 | 0.9 | 600 | 29.6 |
88346 | 950 | 31.5 | 4750 | 0.9 | 611 | 29.6 |
88372 | 900 | 29.8 | 4500 | 1.0 | 675 | 27.8 |
88347 | 950 | 29.5 | 4750 | 0.9 | 658 | 27.6 |
88400 | 850 | 28.1 | 4250 | 1.1 | 714 | 26.0 |
88401 | 850 | 26.4 | 4250 | 1.1 | 756 | 24.3 |
88504 | 700 | 23.2 | 3500 | - | 840 | 23.2 |
88432 | 800 | 25.2 | 4000 | 1.1 | 800 | 22.9 |
88466 | 750 | 24.8 | 3750 | 1.2 | 814 | 22.4 |
88467 | 750 | 23.6 | 3750 | 1.2 | 851 | 21.2 |
88505 | 700 | 23.2 | 3500 | 1.3 | 875 | 20.6 |
88547 | 650 | 21.5 | 3250 | 0.6 | 896 | 20.3 |
88506 | 700 | 21.7 | 3500 | 1.4 | 910 | 18.9 |
88548 | 650 | 21.5 | 3250 | 1.4 | 928 | 18.8 |
88549 | 650 | 20.2 | 3250 | 1.5 | 960 | 17.1 |
88596 | 600 | 19.9 | 3000 | 1.5 | 990 | 16.9 |
88479 | 750 | 21.2 | 3750 | 3.1 | 1295 | 15.1 |
88650 | 550 | 18.2 | 2750 | 1.6 | 1026 | 14.9 |
88651 | 550 | 17.3 | 2750 | 1.6 | 1053 | 14.0 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
88235 | 1250 | 41.4 | 6250 | 0.7 | 310 | 40.0 |
88249 | 1200 | 39.7 | 6000 | 0.8 | 360 | 38.2 |
88237 | 1250 | 35.3 | 6250 | 1.8 | 434 | 31.6 |
88238 | 1250 | 35.3 | 6250 | 1.8 | 496 | 31.6 |
88239 | 1250 | 35.3 | 6250 | 1.8 | 558 | 31.6 |
88240 | 1250 | 35.3 | 6250 | 1.8 | 620 | 31.6 |
88241 | 1250 | 35.3 | 6250 | 1.8 | 682 | 31.6 |
88242 | 1250 | 35.3 | 6250 | 1.8 | 744 | 31.6 |
88323 | 1000 | 33.1 | 5000 | 0.8 | 550 | 31.5 |
88251 | 1200 | 33.9 | 6000 | 1.9 | 480 | 30.1 |
88252 | 1200 | 33.9 | 6000 | 1.9 | 540 | 30.1 |
88253 | 1200 | 33.9 | 6000 | 1.9 | 600 | 30.1 |
88254 | 1200 | 33.9 | 6000 | 1.9 | 660 | 30.1 |
88255 | 1200 | 33.9 | 6000 | 1.9 | 720 | 30.1 |
88256 | 1200 | 33.9 | 6000 | 1.9 | 780 | 30.1 |
88267 | 1150 | 32.5 | 5750 | 2.0 | 513 | 28.5 |
88268 | 1150 | 32.5 | 5750 | 2.0 | 570 | 28.5 |
88269 | 1150 | 32.5 | 5750 | 2.0 | 627 | 28.5 |
88270 | 1150 | 32.5 | 5750 | 2.0 | 684 | 28.5 |
88271 | 1150 | 32.5 | 5750 | 2.0 | 741 | 28.5 |
88272 | 1150 | 32.5 | 5750 | 2.0 | 798 | 28.5 |
88273 | 1150 | 32.5 | 5750 | 2.0 | 855 | 28.5 |
88303 | 1050 | 31.2 | 5250 | 2.1 | 572 | 27.1 |
88284 | 1100 | 31.1 | 5500 | 2.1 | 550 | 26.9 |
88285 | 1100 | 31.1 | 5500 | 2.1 | 605 | 26.9 |
88286 | 1100 | 31.1 | 5500 | 2.1 | 660 | 26.9 |
88287 | 1100 | 31.1 | 5500 | 2.1 | 715 | 26.9 |
88288 | 1100 | 31.1 | 5500 | 2.1 | 770 | 26.9 |
88289 | 1100 | 31.1 | 5500 | 2.1 | 825 | 26.9 |
88290 | 1100 | 31.1 | 5500 | 2.1 | 880 | 26.9 |
88291 | 1100 | 31.1 | 5500 | 2.1 | 935 | 26.9 |
88304 | 1050 | 29.7 | 5250 | 2.2 | 624 | 25.3 |
88305 | 1050 | 29.7 | 5250 | 2.2 | 676 | 25.3 |
88306 | 1050 | 29.7 | 5250 | 2.2 | 728 | 25.3 |
88307 | 1050 | 29.7 | 5250 | 2.2 | 780 | 25.3 |
88308 | 1050 | 29.7 | 5250 | 2.2 | 832 | 25.3 |
88309 | 1050 | 29.7 | 5250 | 2.2 | 884 | 25.3 |
88310 | 1050 | 29.7 | 5250 | 2.2 | 936 | 25.3 |
88311 | 1050 | 29.7 | 5250 | 2.2 | 988 | 25.3 |
88431 | 800 | 26.5 | 4000 | 1.1 | 760 | 24.2 |
88325 | 1000 | 28.2 | 5000 | 2.3 | 650 | 23.6 |
88326 | 1000 | 28.2 | 5000 | 2.3 | 700 | 23.6 |
88327 | 1000 | 28.2 | 5000 | 2.3 | 750 | 23.6 |
88328 | 1000 | 28.2 | 5000 | 2.3 | 800 | 23.6 |
88329 | 1000 | 28.2 | 5000 | 2.3 | 850 | 23.6 |
88330 | 1000 | 28.2 | 5000 | 2.3 | 900 | 23.6 |
88331 | 1000 | 28.2 | 5000 | 2.3 | 950 | 23.6 |
88332 | 1000 | 28.2 | 5000 | 2.3 | 1000 | 23.6 |
88373 | 900 | 28.0 | 4500 | 2.2 | 720 | 23.5 |
88348 | 950 | 26.8 | 4750 | 2.4 | 705 | 22.0 |
88349 | 950 | 26.8 | 4750 | 2.4 | 752 | 22.0 |
88350 | 950 | 26.8 | 4750 | 2.4 | 799 | 22.0 |
88351 | 950 | 26.8 | 4750 | 2.4 | 846 | 22.0 |
88352 | 950 | 26.8 | 4750 | 2.4 | 893 | 22.0 |
88353 | 950 | 26.8 | 4750 | 2.4 | 940 | 22.0 |
88354 | 950 | 26.8 | 4750 | 2.4 | 987 | 22.0 |
88355 | 950 | 26.8 | 4750 | 2.4 | 1034 | 22.0 |
88356 | 950 | 26.8 | 4750 | 2.4 | 1081 | 22.0 |
88374 | 900 | 25.4 | 4500 | 2.6 | 765 | 20.3 |
88375 | 900 | 25.4 | 4500 | 2.6 | 810 | 20.3 |
88376 | 900 | 25.4 | 4500 | 2.6 | 855 | 20.3 |
88377 | 900 | 25.4 | 4500 | 2.6 | 900 | 20.3 |
88378 | 900 | 25.4 | 4500 | 2.6 | 945 | 20.3 |
88379 | 900 | 25.4 | 4500 | 2.6 | 990 | 20.3 |
88380 | 900 | 25.4 | 4500 | 2.6 | 1035 | 20.3 |
88381 | 900 | 25.4 | 4500 | 2.6 | 1080 | 20.3 |
88382 | 900 | 25.4 | 4500 | 2.6 | 1125 | 20.3 |
88402 | 850 | 24.0 | 4250 | 2.7 | 798 | 18.6 |
88403 | 850 | 24.0 | 4250 | 2.7 | 840 | 18.6 |
88404 | 850 | 24.0 | 4250 | 2.7 | 882 | 18.6 |
88405 | 850 | 24.0 | 4250 | 2.7 | 924 | 18.6 |
88406 | 850 | 24.0 | 4250 | 2.7 | 966 | 18.6 |
88407 | 850 | 24.0 | 4250 | 2.7 | 1008 | 18.6 |
88408 | 850 | 24.0 | 4250 | 2.7 | 1050 | 18.6 |
88409 | 850 | 24.0 | 4250 | 2.7 | 1092 | 18.6 |
88410 | 850 | 24.0 | 4250 | 2.7 | 1134 | 18.6 |
88411 | 850 | 24.0 | 4250 | 2.7 | 1176 | 18.6 |
88595 | 600 | 19.9 | 3000 | 1.5 | 960 | 16.9 |
88433 | 800 | 22.6 | 4000 | 2.9 | 840 | 16.8 |
88434 | 800 | 22.6 | 4000 | 2.9 | 880 | 16.8 |
88435 | 800 | 22.6 | 4000 | 2.9 | 920 | 16.8 |
88436 | 800 | 22.6 | 4000 | 2.9 | 960 | 16.8 |
88437 | 800 | 22.6 | 4000 | 2.9 | 1000 | 16.8 |
88438 | 800 | 22.6 | 4000 | 2.9 | 1040 | 16.8 |
88439 | 800 | 22.6 | 4000 | 2.9 | 1080 | 16.8 |
88440 | 800 | 22.6 | 4000 | 2.9 | 1120 | 16.8 |
88441 | 800 | 22.6 | 4000 | 2.9 | 1160 | 16.8 |
88442 | 800 | 22.6 | 4000 | 2.9 | 1200 | 16.8 |
88443 | 800 | 22.6 | 4000 | 2.9 | 1240 | 16.8 |
88649 | 550 | 18.2 | 2750 | 1.3 | 999 | 15.7 |
88468 | 750 | 21.2 | 3750 | 3.1 | 888 | 15.1 |
88469 | 750 | 21.2 | 3750 | 3.1 | 925 | 15.1 |
88470 | 750 | 21.2 | 3750 | 3.1 | 962 | 15.1 |
88471 | 750 | 21.2 | 3750 | 3.1 | 999 | 15.1 |
88472 | 750 | 21.2 | 3750 | 3.1 | 1036 | 15.1 |
88473 | 750 | 21.2 | 3750 | 3.1 | 1073 | 15.1 |
88474 | 750 | 21.2 | 3750 | 3.1 | 1110 | 15.1 |
88475 | 750 | 21.2 | 3750 | 3.1 | 1147 | 15.1 |
88476 | 750 | 21.2 | 3750 | 3.1 | 1184 | 15.1 |
88477 | 750 | 21.2 | 3750 | 3.1 | 1221 | 15.1 |
88478 | 750 | 21.2 | 3750 | 3.1 | 1258 | 15.1 |
88710 | 500 | 16.6 | 2500 | 1.6 | 1050 | 13.4 |
88507 | 700 | 19.8 | 3500 | 3.3 | 945 | 13.2 |
88508 | 700 | 19.8 | 3500 | 3.3 | 980 | 13.2 |
88509 | 700 | 19.8 | 3500 | 3.3 | 1015 | 13.2 |
88510 | 700 | 19.8 | 3500 | 3.3 | 1050 | 13.2 |
88511 | 700 | 19.8 | 3500 | 3.3 | 1085 | 13.2 |
88512 | 700 | 19.8 | 3500 | 3.3 | 1120 | 13.2 |
88513 | 700 | 19.8 | 3500 | 3.3 | 1155 | 13.2 |
88514 | 700 | 19.8 | 3500 | 3.3 | 1190 | 13.2 |
88515 | 700 | 19.8 | 3500 | 3.3 | 1225 | 13.2 |
88516 | 700 | 19.8 | 3500 | 3.3 | 1260 | 13.2 |
88517 | 700 | 19.8 | 3500 | 3.3 | 1295 | 13.2 |
88518 | 700 | 19.8 | 3500 | 3.3 | 1330 | 13.2 |
88711 | 500 | 16.6 | 2500 | 1.8 | 1075 | 13.0 |
88712 | 500 | 15.7 | 2500 | 1.8 | 1100 | 12.1 |
88597 | 600 | 18.6 | 3000 | 3.3 | 1020 | 12.0 |
88550 | 650 | 18.4 | 3250 | 3.5 | 992 | 11.3 |
88551 | 650 | 18.4 | 3250 | 3.5 | 1024 | 11.3 |
88552 | 650 | 18.4 | 3250 | 3.5 | 1056 | 11.3 |
88553 | 650 | 18.4 | 3250 | 3.5 | 1088 | 11.3 |
88554 | 650 | 18.4 | 3250 | 3.5 | 1120 | 11.3 |
88555 | 650 | 18.4 | 3250 | 3.5 | 1152 | 11.3 |
88556 | 650 | 18.4 | 3250 | 3.5 | 1184 | 11.3 |
88557 | 650 | 18.4 | 3250 | 3.5 | 1216 | 11.3 |
88558 | 650 | 18.4 | 3250 | 3.5 | 1248 | 11.3 |
88559 | 650 | 18.4 | 3250 | 3.5 | 1280 | 11.3 |
88560 | 650 | 18.4 | 3250 | 3.5 | 1312 | 11.3 |
88561 | 650 | 18.4 | 3250 | 3.5 | 1344 | 11.3 |
88562 | 650 | 18.4 | 3250 | 3.5 | 1376 | 11.3 |
88598 | 600 | 16.9 | 3000 | 3.8 | 1050 | 9.3 |
88599 | 600 | 16.9 | 3000 | 3.8 | 1080 | 9.3 |
88600 | 600 | 16.9 | 3000 | 3.8 | 1110 | 9.3 |
88601 | 600 | 16.9 | 3000 | 3.8 | 1140 | 9.3 |
88602 | 600 | 16.9 | 3000 | 3.8 | 1170 | 9.3 |
88603 | 600 | 16.9 | 3000 | 3.8 | 1200 | 9.3 |
88604 | 600 | 16.9 | 3000 | 3.8 | 1230 | 9.3 |
88605 | 600 | 16.9 | 3000 | 3.8 | 1260 | 9.3 |
88606 | 600 | 16.9 | 3000 | 3.8 | 1290 | 9.3 |
88607 | 600 | 16.9 | 3000 | 3.8 | 1320 | 9.3 |
88608 | 600 | 16.9 | 3000 | 3.8 | 1350 | 9.3 |
88609 | 600 | 16.9 | 3000 | 3.8 | 1380 | 9.3 |
88610 | 600 | 16.9 | 3000 | 3.8 | 1410 | 9.3 |
88611 | 600 | 16.9 | 3000 | 3.8 | 1440 | 9.3 |
88652 | 550 | 15.5 | 2750 | 4.2 | 1080 | 7.2 |
88653 | 550 | 15.5 | 2750 | 4.2 | 1107 | 7.2 |
88654 | 550 | 15.5 | 2750 | 4.2 | 1134 | 7.2 |
88655 | 550 | 15.5 | 2750 | 4.2 | 1161 | 7.2 |
88656 | 550 | 15.5 | 2750 | 4.2 | 1188 | 7.2 |
88657 | 550 | 15.5 | 2750 | 4.2 | 1215 | 7.2 |
88658 | 550 | 15.5 | 2750 | 4.2 | 1242 | 7.2 |
88659 | 550 | 15.5 | 2750 | 4.2 | 1269 | 7.2 |
88660 | 550 | 15.5 | 2750 | 4.2 | 1296 | 7.2 |
88661 | 550 | 15.5 | 2750 | 4.2 | 1323 | 7.2 |
88662 | 550 | 15.5 | 2750 | 4.2 | 1350 | 7.2 |
88663 | 550 | 15.5 | 2750 | 4.2 | 1377 | 7.2 |
88664 | 550 | 15.5 | 2750 | 4.2 | 1404 | 7.2 |
88665 | 550 | 15.5 | 2750 | 4.2 | 1431 | 7.2 |
88666 | 550 | 15.5 | 2750 | 4.2 | 1458 | 7.2 |
88667 | 550 | 15.5 | 2750 | 4.2 | 1485 | 7.2 |
88713 | 500 | 14.5 | 2500 | 4.6 | 1125 | 5.3 |
88714 | 500 | 14.1 | 2500 | 4.6 | 1150 | 4.9 |
88715 | 500 | 14.1 | 2500 | 4.6 | 1175 | 4.9 |
88716 | 500 | 14.1 | 2500 | 4.6 | 1200 | 4.9 |
88717 | 500 | 14.1 | 2500 | 4.6 | 1225 | 4.9 |
88718 | 500 | 14.1 | 2500 | 4.6 | 1250 | 4.9 |
88719 | 500 | 14.1 | 2500 | 4.6 | 1275 | 4.9 |
88720 | 500 | 14.1 | 2500 | 4.6 | 1300 | 4.9 |
88721 | 500 | 14.1 | 2500 | 4.6 | 1325 | 4.9 |
88722 | 500 | 14.1 | 2500 | 4.6 | 1350 | 4.9 |
88723 | 500 | 14.1 | 2500 | 4.6 | 1375 | 4.9 |
88724 | 500 | 14.1 | 2500 | 4.6 | 1400 | 4.9 |
88725 | 500 | 14.1 | 2500 | 4.6 | 1425 | 4.9 |
88726 | 500 | 14.1 | 2500 | 4.6 | 1450 | 4.9 |
88727 | 500 | 14.1 | 2500 | 4.6 | 1475 | 4.9 |
88728 | 500 | 14.1 | 2500 | 4.6 | 1500 | 4.9 |
88729 | 500 | 14.1 | 2500 | 4.6 | 1525 | 4.9 |
Overall score = score_ratio - 2 * repetitive DNA content