Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign105 - back to list
Summary
./analyse_probe_search_results : Tue Jan 31 11:13:17 2006
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign105 assembly : NCBIM34 bias : 3prime chromosome : 13 id : 98 strand : 1 ------------- Design window length: 3501bp All jobs for probe design are successful - total: 56 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 1114 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 1114/1114 Putative probes that are unique : 0/1114 No putative probes pass with the above criteria Now trying: score-ratio 2, and percent repetitive 40 Putative probes exceeding selection criteria : 466/1114 (both unique and not unique) Putative probes with successfully-picked primers: 465/466 Identified 97 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
No probes
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
93971 | 850 | 13.9 | 4250 | 6.9 | 1932 | 0.1 |
94038 | 800 | 13.1 | 4000 | 6.6 | 1960 | -0.1 |
94037 | 800 | 13.1 | 4000 | 7.0 | 1920 | -0.9 |
94191 | 700 | 11.5 | 3500 | 6.4 | 2065 | -1.4 |
94109 | 750 | 12.3 | 3750 | 7.1 | 1924 | -1.8 |
94110 | 750 | 12.3 | 3750 | 7.1 | 1961 | -1.8 |
94111 | 750 | 12.3 | 3750 | 7.1 | 1998 | -1.8 |
94278 | 650 | 10.7 | 3250 | 6.9 | 2080 | -3.2 |
94279 | 650 | 10.7 | 3250 | 6.9 | 2112 | -3.2 |
94187 | 700 | 11.5 | 3500 | 7.6 | 1925 | -3.7 |
94188 | 700 | 11.5 | 3500 | 7.6 | 1960 | -3.7 |
94189 | 700 | 11.5 | 3500 | 7.6 | 1995 | -3.7 |
94190 | 700 | 11.5 | 3500 | 7.6 | 2030 | -3.7 |
94112 | 750 | 12.3 | 3750 | 8.3 | 2035 | -4.2 |
94372 | 600 | 9.8 | 3000 | 7.5 | 2070 | -5.2 |
94373 | 600 | 9.8 | 3000 | 7.5 | 2100 | -5.2 |
94374 | 600 | 9.8 | 3000 | 7.5 | 2130 | -5.2 |
94375 | 600 | 9.8 | 3000 | 7.5 | 2160 | -5.2 |
94274 | 650 | 10.7 | 3250 | 8.2 | 1952 | -5.7 |
94275 | 650 | 10.7 | 3250 | 8.2 | 1984 | -5.7 |
94276 | 650 | 10.7 | 3250 | 8.2 | 2016 | -5.7 |
94277 | 650 | 10.7 | 3250 | 8.2 | 2048 | -5.7 |
94039 | 800 | 13.1 | 4000 | 9.6 | 2000 | -6.1 |
93970 | 850 | 13.9 | 4250 | 10.1 | 1890 | -6.3 |
94273 | 650 | 10.7 | 3250 | 8.6 | 1920 | -6.6 |
94477 | 550 | 9.0 | 2750 | 8.2 | 2079 | -7.3 |
94478 | 550 | 9.0 | 2750 | 8.2 | 2106 | -7.3 |
94479 | 550 | 9.0 | 2750 | 8.2 | 2133 | -7.3 |
94480 | 550 | 9.0 | 2750 | 8.2 | 2160 | -7.3 |
94481 | 550 | 9.0 | 2750 | 8.2 | 2187 | -7.3 |
94482 | 550 | 9.0 | 2750 | 8.2 | 2214 | -7.3 |
93909 | 900 | 14.8 | 4500 | 11.1 | 1890 | -7.5 |
94368 | 600 | 9.8 | 3000 | 8.8 | 1950 | -7.8 |
94369 | 600 | 9.8 | 3000 | 8.8 | 1980 | -7.8 |
94370 | 600 | 9.8 | 3000 | 8.8 | 2010 | -7.8 |
94371 | 600 | 9.8 | 3000 | 8.8 | 2040 | -7.8 |
94192 | 700 | 11.5 | 3500 | 9.9 | 2100 | -8.2 |
94280 | 650 | 10.7 | 3250 | 9.7 | 2144 | -8.7 |
94367 | 600 | 9.8 | 3000 | 9.3 | 1920 | -8.8 |
94593 | 500 | 8.2 | 2500 | 9.0 | 2075 | -9.8 |
94594 | 500 | 8.2 | 2500 | 9.0 | 2100 | -9.8 |
94595 | 500 | 8.2 | 2500 | 9.0 | 2125 | -9.8 |
94596 | 500 | 8.2 | 2500 | 9.0 | 2150 | -9.8 |
94597 | 500 | 8.2 | 2500 | 9.0 | 2175 | -9.8 |
94598 | 500 | 8.2 | 2500 | 9.0 | 2200 | -9.8 |
94599 | 500 | 8.2 | 2500 | 9.0 | 2225 | -9.8 |
94600 | 500 | 8.2 | 2500 | 9.0 | 2250 | -9.8 |
94601 | 500 | 8.2 | 2500 | 9.0 | 2275 | -9.8 |
93972 | 850 | 13.9 | 4250 | 11.9 | 1974 | -9.8 |
94376 | 600 | 9.8 | 3000 | 9.8 | 2190 | -9.8 |
93910 | 900 | 14.8 | 4500 | 12.4 | 1935 | -10.1 |
94472 | 550 | 9.0 | 2750 | 9.6 | 1944 | -10.3 |
94473 | 550 | 9.0 | 2750 | 9.6 | 1971 | -10.3 |
94474 | 550 | 9.0 | 2750 | 9.6 | 1998 | -10.3 |
94475 | 550 | 9.0 | 2750 | 9.6 | 2025 | -10.3 |
94476 | 550 | 9.0 | 2750 | 9.6 | 2052 | -10.3 |
94036 | 800 | 13.1 | 4000 | 12.0 | 1880 | -10.9 |
94108 | 750 | 12.3 | 3750 | 11.9 | 1887 | -11.4 |
94113 | 750 | 12.3 | 3750 | 12.1 | 2072 | -12.0 |
94585 | 500 | 16.0 | 2500 | 14.2 | 1875 | -12.4 |
94471 | 550 | 9.0 | 2750 | 10.7 | 1917 | -12.4 |
94587 | 500 | 8.5 | 2500 | 10.6 | 1925 | -12.7 |
94588 | 500 | 8.5 | 2500 | 10.6 | 1950 | -12.7 |
94483 | 550 | 9.0 | 2750 | 10.9 | 2241 | -12.8 |
94589 | 500 | 8.2 | 2500 | 10.6 | 1975 | -13.0 |
94590 | 500 | 8.2 | 2500 | 10.6 | 2000 | -13.0 |
94591 | 500 | 8.2 | 2500 | 10.6 | 2025 | -13.0 |
94592 | 500 | 8.2 | 2500 | 10.6 | 2050 | -13.0 |
94186 | 700 | 11.5 | 3500 | 12.3 | 1890 | -13.1 |
93908 | 900 | 14.8 | 4500 | 14.6 | 1845 | -14.4 |
93851 | 950 | 15.6 | 4750 | 15.8 | 1833 | -16.0 |
93852 | 950 | 15.6 | 4750 | 15.8 | 1880 | -16.0 |
94040 | 800 | 13.1 | 4000 | 14.6 | 2040 | -16.1 |
93969 | 850 | 13.9 | 4250 | 15.1 | 1848 | -16.2 |
94272 | 650 | 10.7 | 3250 | 13.5 | 1888 | -16.4 |
93575 | 1250 | 18.3 | 6250 | 18.2 | 1488 | -18.2 |
94193 | 700 | 11.5 | 3500 | 14.9 | 2135 | -18.2 |
94281 | 650 | 10.7 | 3250 | 14.6 | 2176 | -18.6 |
94366 | 600 | 9.8 | 3000 | 14.3 | 1890 | -18.8 |
94586 | 500 | 9.5 | 2500 | 14.2 | 1900 | -18.9 |
93540 | 1300 | 19.0 | 6500 | 19.0 | 1495 | -19.0 |
94602 | 500 | 8.2 | 2500 | 13.8 | 2300 | -19.4 |
94377 | 600 | 9.8 | 3000 | 14.8 | 2220 | -19.8 |
94584 | 500 | 12.3 | 2500 | 16.2 | 1850 | -20.1 |
93613 | 1200 | 17.5 | 6000 | 19.0 | 1500 | -20.5 |
93614 | 1200 | 17.5 | 6000 | 19.0 | 1560 | -20.5 |
94035 | 800 | 13.1 | 4000 | 17.0 | 1840 | -20.9 |
93853 | 950 | 11.2 | 4750 | 16.2 | 1927 | -21.2 |
94107 | 750 | 12.3 | 3750 | 16.8 | 1850 | -21.3 |
94470 | 550 | 9.4 | 2750 | 15.6 | 1890 | -21.9 |
93576 | 1250 | 18.3 | 6250 | 20.2 | 1550 | -22.0 |
94484 | 550 | 9.0 | 2750 | 15.8 | 2268 | -22.6 |
93973 | 850 | 11.0 | 4250 | 16.8 | 2016 | -22.7 |
93654 | 1150 | 16.8 | 5750 | 19.8 | 1539 | -22.8 |
94185 | 700 | 11.5 | 3500 | 17.3 | 1855 | -23.1 |
94114 | 750 | 10.5 | 3750 | 17.1 | 2109 | -23.6 |
93653 | 1150 | 16.8 | 5750 | 20.3 | 1482 | -23.7 |
93798 | 1000 | 15.6 | 5000 | 20.0 | 1850 | -24.4 |
93911 | 900 | 10.4 | 4500 | 17.4 | 1980 | -24.5 |
93539 | 1300 | 19.0 | 6500 | 21.9 | 1430 | -24.8 |
93697 | 1100 | 16.1 | 5500 | 20.7 | 1540 | -25.4 |
93698 | 1100 | 16.1 | 5500 | 20.7 | 1595 | -25.4 |
93797 | 1000 | 14.6 | 5000 | 20.0 | 1800 | -25.4 |
93696 | 1100 | 16.1 | 5500 | 20.9 | 1485 | -25.7 |
93907 | 900 | 13.2 | 4500 | 19.6 | 1800 | -26.0 |
93968 | 850 | 13.9 | 4250 | 20.0 | 1806 | -26.1 |
94271 | 650 | 10.7 | 3250 | 18.5 | 1856 | -26.3 |
93656 | 1150 | 16.8 | 5750 | 22.2 | 1653 | -27.5 |
93615 | 1200 | 17.5 | 6000 | 22.7 | 1620 | -27.8 |
93574 | 1250 | 18.3 | 6250 | 23.1 | 1426 | -28.0 |
94041 | 800 | 9.2 | 4000 | 18.6 | 2080 | -28.0 |
93742 | 1050 | 15.4 | 5250 | 21.7 | 1508 | -28.1 |
93743 | 1050 | 15.4 | 5250 | 21.7 | 1560 | -28.1 |
93744 | 1050 | 15.4 | 5250 | 21.7 | 1612 | -28.1 |
93745 | 1050 | 15.4 | 5250 | 21.7 | 1664 | -28.1 |
93612 | 1200 | 17.5 | 6000 | 22.9 | 1440 | -28.3 |
94365 | 600 | 10.2 | 3000 | 19.3 | 1860 | -28.5 |
94603 | 500 | 8.2 | 2500 | 18.8 | 2325 | -29.4 |
94282 | 650 | 9.1 | 3250 | 19.5 | 2208 | -30.0 |
93541 | 1300 | 18.0 | 6500 | 24.0 | 1560 | -30.0 |
93799 | 1000 | 9.7 | 5000 | 20.0 | 1900 | -30.3 |
94378 | 600 | 9.3 | 3000 | 19.8 | 2250 | -30.3 |
93700 | 1100 | 16.1 | 5500 | 23.4 | 1705 | -30.6 |
93791 | 1000 | 14.6 | 5000 | 22.8 | 1500 | -31.0 |
93792 | 1000 | 14.6 | 5000 | 22.8 | 1550 | -31.0 |
93793 | 1000 | 14.6 | 5000 | 22.8 | 1600 | -31.0 |
93794 | 1000 | 14.6 | 5000 | 22.8 | 1650 | -31.0 |
93961 | 850 | 12.4 | 4250 | 21.8 | 1512 | -31.1 |
94194 | 700 | 8.6 | 3500 | 19.9 | 2170 | -31.1 |
94106 | 750 | 12.3 | 3750 | 21.7 | 1813 | -31.2 |
94469 | 550 | 9.5 | 2750 | 20.5 | 1863 | -31.6 |
93747 | 1050 | 15.4 | 5250 | 23.8 | 1768 | -32.3 |
94034 | 800 | 11.7 | 4000 | 22.0 | 1800 | -32.3 |
94485 | 550 | 8.8 | 2750 | 20.7 | 2295 | -32.6 |
94583 | 500 | 9.6 | 2500 | 21.2 | 1825 | -32.8 |
94184 | 700 | 11.5 | 3500 | 22.3 | 1820 | -33.1 |
94468 | 550 | 10.8 | 2750 | 22.0 | 1836 | -33.2 |
93577 | 1250 | 17.0 | 6250 | 25.1 | 1612 | -33.2 |
93900 | 900 | 13.2 | 4500 | 23.3 | 1485 | -33.5 |
93652 | 1150 | 16.8 | 5750 | 25.2 | 1425 | -33.6 |
93741 | 1050 | 15.4 | 5250 | 24.7 | 1456 | -34.0 |
94027 | 800 | 11.7 | 4000 | 22.9 | 1520 | -34.1 |
94028 | 800 | 11.7 | 4000 | 22.9 | 1560 | -34.1 |
93844 | 950 | 13.9 | 4750 | 24.0 | 1504 | -34.1 |
93845 | 950 | 13.9 | 4750 | 24.0 | 1551 | -34.1 |
93846 | 950 | 13.9 | 4750 | 24.0 | 1598 | -34.1 |
93847 | 950 | 13.9 | 4750 | 24.0 | 1645 | -34.1 |
93848 | 950 | 13.9 | 4750 | 24.0 | 1692 | -34.1 |
94467 | 550 | 10.1 | 2750 | 22.2 | 1809 | -34.3 |
93974 | 850 | 7.7 | 4250 | 21.1 | 2058 | -34.4 |
93854 | 950 | 7.8 | 4750 | 21.2 | 1974 | -34.5 |
93960 | 850 | 12.4 | 4250 | 23.5 | 1470 | -34.6 |
93748 | 1050 | 12.9 | 5250 | 23.8 | 1820 | -34.8 |
93538 | 1300 | 19.0 | 6500 | 26.9 | 1365 | -34.8 |
93695 | 1100 | 16.1 | 5500 | 25.9 | 1430 | -35.7 |
94026 | 800 | 11.7 | 4000 | 23.8 | 1480 | -35.8 |
93906 | 900 | 13.2 | 4500 | 24.6 | 1755 | -36.0 |
94270 | 650 | 10.7 | 3250 | 23.4 | 1824 | -36.1 |
94115 | 750 | 7.6 | 3750 | 22.0 | 2146 | -36.4 |
93967 | 850 | 12.4 | 4250 | 24.9 | 1764 | -37.5 |
93901 | 900 | 13.2 | 4500 | 25.3 | 1530 | -37.5 |
93902 | 900 | 13.2 | 4500 | 25.3 | 1575 | -37.5 |
93903 | 900 | 13.2 | 4500 | 25.3 | 1620 | -37.5 |
93904 | 900 | 13.2 | 4500 | 25.3 | 1665 | -37.5 |
93905 | 900 | 13.2 | 4500 | 25.3 | 1710 | -37.5 |
93912 | 900 | 7.4 | 4500 | 22.4 | 2025 | -37.5 |
94098 | 750 | 11.0 | 3750 | 24.4 | 1517 | -37.8 |
94099 | 750 | 11.0 | 3750 | 24.4 | 1554 | -37.8 |
94100 | 750 | 11.0 | 3750 | 24.4 | 1591 | -37.8 |
93573 | 1250 | 18.3 | 6250 | 28.1 | 1364 | -37.9 |
93899 | 900 | 13.2 | 4500 | 25.6 | 1440 | -38.0 |
93800 | 1000 | 7.3 | 5000 | 22.7 | 1950 | -38.1 |
93611 | 1200 | 17.5 | 6000 | 27.9 | 1380 | -38.3 |
93790 | 1000 | 14.6 | 5000 | 26.5 | 1450 | -38.4 |
94364 | 600 | 10.2 | 3000 | 24.3 | 1830 | -38.5 |
93749 | 1050 | 8.8 | 5250 | 23.8 | 1872 | -38.8 |
94097 | 750 | 11.0 | 3750 | 25.3 | 1480 | -39.7 |
94604 | 500 | 7.8 | 2500 | 23.8 | 2350 | -39.8 |
93843 | 950 | 13.9 | 4750 | 27.2 | 1457 | -40.4 |
94042 | 800 | 6.7 | 4000 | 23.6 | 2120 | -40.5 |
94400 | 550 | 14.9 | 2750 | 27.8 | 0 | -40.8 |
93842 | 950 | 13.9 | 4750 | 27.4 | 1410 | -40.8 |
93750 | 1050 | 6.8 | 5250 | 23.9 | 1924 | -41.0 |
93962 | 850 | 12.4 | 4250 | 26.7 | 1554 | -41.0 |
93963 | 850 | 12.4 | 4250 | 26.8 | 1596 | -41.2 |
93964 | 850 | 12.4 | 4250 | 26.8 | 1638 | -41.2 |
93965 | 850 | 12.4 | 4250 | 26.8 | 1680 | -41.2 |
93966 | 850 | 12.4 | 4250 | 26.8 | 1722 | -41.2 |
93616 | 1200 | 13.8 | 6000 | 27.7 | 1680 | -41.5 |
94283 | 650 | 7.0 | 3250 | 24.5 | 2240 | -41.9 |
94175 | 700 | 10.2 | 3500 | 26.1 | 1505 | -42.1 |
94176 | 700 | 10.2 | 3500 | 26.1 | 1540 | -42.1 |
94177 | 700 | 10.2 | 3500 | 26.1 | 1575 | -42.1 |
94178 | 700 | 10.2 | 3500 | 26.1 | 1610 | -42.1 |
94179 | 700 | 10.2 | 3500 | 26.1 | 1645 | -42.1 |
94033 | 800 | 11.7 | 4000 | 27.0 | 1760 | -42.3 |
94105 | 750 | 11.0 | 3750 | 26.7 | 1776 | -42.4 |
94101 | 750 | 11.0 | 3750 | 26.8 | 1628 | -42.6 |
94379 | 600 | 6.9 | 3000 | 24.8 | 2280 | -42.8 |
94195 | 700 | 6.5 | 3500 | 24.9 | 2205 | -43.2 |
93651 | 1150 | 16.8 | 5750 | 30.2 | 1368 | -43.5 |
93740 | 1050 | 15.4 | 5250 | 29.6 | 1404 | -43.9 |
94029 | 800 | 11.7 | 4000 | 27.9 | 1600 | -44.1 |
94183 | 700 | 10.2 | 3500 | 27.3 | 1785 | -44.3 |
93959 | 850 | 12.4 | 4250 | 28.5 | 1428 | -44.5 |
94486 | 550 | 6.7 | 2750 | 25.6 | 2322 | -44.5 |
93537 | 1300 | 19.0 | 6500 | 31.9 | 1300 | -44.8 |
93702 | 1100 | 9.5 | 5500 | 27.3 | 1815 | -45.0 |
94582 | 500 | 7.3 | 2500 | 26.2 | 1800 | -45.1 |
93975 | 850 | 6.2 | 4250 | 25.8 | 2100 | -45.3 |
94030 | 800 | 11.7 | 4000 | 28.5 | 1640 | -45.3 |
94031 | 800 | 11.7 | 4000 | 28.5 | 1680 | -45.3 |
94032 | 800 | 11.7 | 4000 | 28.5 | 1720 | -45.3 |
94605 | 500 | 6.0 | 2500 | 25.8 | 2375 | -45.6 |
94510 | 500 | 13.5 | 2500 | 29.6 | 0 | -45.7 |
94511 | 500 | 13.5 | 2500 | 29.6 | 25 | -45.7 |
93694 | 1100 | 16.1 | 5500 | 30.9 | 1375 | -45.7 |
94025 | 800 | 11.7 | 4000 | 28.7 | 1440 | -45.8 |
93855 | 950 | 6.2 | 4750 | 26.1 | 2021 | -46.0 |
94466 | 550 | 8.0 | 2750 | 27.1 | 1782 | -46.1 |
94606 | 500 | 4.9 | 2500 | 25.8 | 2400 | -46.7 |
94260 | 650 | 9.5 | 3250 | 28.2 | 1504 | -46.8 |
94261 | 650 | 9.5 | 3250 | 28.2 | 1536 | -46.8 |
94262 | 650 | 9.5 | 3250 | 28.2 | 1568 | -46.8 |
94263 | 650 | 9.5 | 3250 | 28.2 | 1600 | -46.8 |
94264 | 650 | 9.5 | 3250 | 28.2 | 1632 | -46.8 |
94265 | 650 | 9.5 | 3250 | 28.2 | 1664 | -46.8 |
94266 | 650 | 9.5 | 3250 | 28.2 | 1696 | -46.8 |
94174 | 700 | 10.2 | 3500 | 28.6 | 1470 | -46.9 |
94269 | 650 | 9.5 | 3250 | 28.3 | 1792 | -47.1 |
93913 | 900 | 6.0 | 4500 | 26.6 | 2070 | -47.2 |
93703 | 1100 | 7.3 | 5500 | 27.3 | 1870 | -47.3 |
93542 | 1300 | 10.6 | 6500 | 29.0 | 1625 | -47.4 |
93789 | 1000 | 14.6 | 5000 | 31.0 | 1400 | -47.4 |
94512 | 500 | 13.5 | 2500 | 30.6 | 50 | -47.7 |
94180 | 700 | 10.2 | 3500 | 29.0 | 1680 | -47.8 |
93898 | 900 | 13.2 | 4500 | 30.6 | 1395 | -48.0 |
94116 | 750 | 5.8 | 3750 | 26.9 | 2183 | -48.1 |
93704 | 1100 | 6.4 | 5500 | 27.3 | 1925 | -48.1 |
94362 | 600 | 8.8 | 3000 | 28.5 | 1770 | -48.2 |
94363 | 600 | 8.8 | 3000 | 28.5 | 1800 | -48.2 |
93610 | 1200 | 17.5 | 6000 | 32.9 | 1320 | -48.3 |
93788 | 1000 | 14.6 | 5000 | 32.0 | 1350 | -49.4 |
93801 | 1000 | 6.0 | 5000 | 27.7 | 2000 | -49.4 |
94630 | 500 | 9.0 | 2500 | 29.2 | 3000 | -49.4 |
94096 | 750 | 11.0 | 3750 | 30.3 | 1443 | -49.6 |
94102 | 750 | 11.0 | 3750 | 30.4 | 1665 | -49.8 |
94103 | 750 | 11.0 | 3750 | 30.4 | 1702 | -49.8 |
94104 | 750 | 11.0 | 3750 | 30.4 | 1739 | -49.8 |
94401 | 550 | 14.9 | 2750 | 32.7 | 27 | -50.6 |
93841 | 950 | 13.9 | 4750 | 32.3 | 1363 | -50.7 |
93751 | 1050 | 6.1 | 5250 | 28.7 | 1976 | -51.2 |
94259 | 650 | 9.5 | 3250 | 30.5 | 1472 | -51.4 |
94043 | 800 | 5.6 | 4000 | 28.6 | 2160 | -51.7 |
94353 | 600 | 8.8 | 3000 | 30.5 | 1500 | -52.2 |
94354 | 600 | 8.8 | 3000 | 30.5 | 1530 | -52.2 |
94355 | 600 | 8.8 | 3000 | 30.5 | 1560 | -52.2 |
94356 | 600 | 8.8 | 3000 | 30.5 | 1590 | -52.2 |
94357 | 600 | 8.8 | 3000 | 30.5 | 1620 | -52.2 |
94358 | 600 | 8.8 | 3000 | 30.5 | 1650 | -52.2 |
94359 | 600 | 8.8 | 3000 | 30.5 | 1680 | -52.2 |
94360 | 600 | 8.8 | 3000 | 30.5 | 1710 | -52.2 |
94361 | 600 | 8.8 | 3000 | 30.5 | 1740 | -52.2 |
94267 | 650 | 9.5 | 3250 | 30.9 | 1728 | -52.3 |
93739 | 1050 | 15.4 | 5250 | 34.3 | 1352 | -53.2 |
93659 | 1150 | 7.5 | 5750 | 30.4 | 1824 | -53.4 |
93650 | 1150 | 16.8 | 5750 | 35.1 | 1311 | -53.4 |
93660 | 1150 | 6.7 | 5750 | 30.3 | 1881 | -53.8 |
94182 | 700 | 10.2 | 3500 | 32.3 | 1750 | -54.3 |
93958 | 850 | 12.4 | 4250 | 33.4 | 1386 | -54.4 |
94196 | 700 | 5.3 | 3500 | 29.9 | 2240 | -54.4 |
93856 | 950 | 5.5 | 4750 | 30.0 | 2068 | -54.5 |
93536 | 1300 | 19.0 | 6500 | 36.9 | 1235 | -54.8 |
94181 | 700 | 10.2 | 3500 | 32.6 | 1715 | -54.9 |
94581 | 500 | 7.3 | 2500 | 31.2 | 1775 | -55.1 |
93738 | 1050 | 15.4 | 5250 | 35.2 | 1300 | -55.1 |
93693 | 1100 | 16.1 | 5500 | 35.9 | 1320 | -55.7 |
94024 | 800 | 11.7 | 4000 | 33.8 | 1400 | -55.8 |
94303 | 600 | 11.9 | 3000 | 33.8 | 0 | -55.8 |
94465 | 550 | 8.0 | 2750 | 32.0 | 1755 | -56.0 |
93976 | 850 | 5.2 | 4250 | 30.7 | 2142 | -56.2 |
93617 | 1200 | 9.1 | 6000 | 32.7 | 1740 | -56.3 |
93549 | 1300 | 7.6 | 6500 | 31.9 | 2080 | -56.3 |
93550 | 1300 | 7.6 | 6500 | 31.9 | 2145 | -56.3 |
94455 | 550 | 8.0 | 2750 | 32.2 | 1485 | -56.3 |
93661 | 1150 | 6.7 | 5750 | 31.6 | 1938 | -56.4 |
94173 | 700 | 10.2 | 3500 | 33.6 | 1435 | -56.9 |
94268 | 650 | 9.5 | 3250 | 33.2 | 1760 | -57.0 |
93914 | 900 | 5.2 | 4500 | 31.3 | 2115 | -57.4 |
94225 | 650 | 5.3 | 3250 | 31.4 | 384 | -57.5 |
93547 | 1300 | 7.6 | 6500 | 32.5 | 1950 | -57.5 |
93548 | 1300 | 7.6 | 6500 | 32.5 | 2015 | -57.5 |
94513 | 500 | 13.5 | 2500 | 35.6 | 75 | -57.7 |
94352 | 600 | 8.8 | 3000 | 33.3 | 1470 | -57.9 |
93897 | 900 | 13.2 | 4500 | 35.6 | 1350 | -58.0 |
93705 | 1100 | 6.4 | 5500 | 32.3 | 1980 | -58.1 |
94456 | 550 | 8.0 | 2750 | 33.3 | 1512 | -58.5 |
94457 | 550 | 8.0 | 2750 | 33.3 | 1539 | -58.5 |
94458 | 550 | 8.0 | 2750 | 33.3 | 1566 | -58.5 |
94459 | 550 | 8.0 | 2750 | 33.3 | 1593 | -58.5 |
94460 | 550 | 8.0 | 2750 | 33.3 | 1620 | -58.5 |
94461 | 550 | 8.0 | 2750 | 33.3 | 1647 | -58.5 |
94462 | 550 | 8.0 | 2750 | 33.3 | 1674 | -58.5 |
94463 | 550 | 8.0 | 2750 | 33.3 | 1701 | -58.5 |
94464 | 550 | 8.0 | 2750 | 33.3 | 1728 | -58.5 |
94117 | 750 | 5.0 | 3750 | 31.9 | 2220 | -58.8 |
93587 | 1250 | 7.3 | 6250 | 33.2 | 2232 | -59.1 |
93802 | 1000 | 5.8 | 5000 | 32.5 | 2050 | -59.2 |
93619 | 1200 | 7.0 | 6000 | 33.2 | 1860 | -59.3 |
93620 | 1200 | 7.0 | 6000 | 33.2 | 1920 | -59.3 |
94095 | 750 | 11.0 | 3750 | 35.2 | 1406 | -59.4 |
93618 | 1200 | 7.2 | 6000 | 33.3 | 1800 | -59.5 |
93543 | 1300 | 8.0 | 6500 | 34.0 | 1690 | -60.0 |
94224 | 650 | 5.3 | 3250 | 32.9 | 352 | -60.6 |
93582 | 1250 | 7.3 | 6250 | 33.9 | 1922 | -60.6 |
94488 | 550 | 4.5 | 2750 | 32.5 | 2376 | -60.6 |
93761 | 1000 | 8.1 | 5000 | 34.6 | 0 | -61.1 |
94489 | 550 | 4.0 | 2750 | 32.5 | 2403 | -61.1 |
94316 | 600 | 4.9 | 3000 | 33.0 | 390 | -61.1 |
94317 | 600 | 4.9 | 3000 | 33.0 | 420 | -61.1 |
93752 | 1050 | 6.1 | 5250 | 33.6 | 2028 | -61.1 |
94258 | 650 | 9.5 | 3250 | 35.4 | 1440 | -61.3 |
93713 | 1050 | 8.5 | 5250 | 35.0 | 0 | -61.6 |
94142 | 700 | 5.7 | 3500 | 34.0 | 350 | -62.3 |
94044 | 800 | 4.8 | 4000 | 33.6 | 2200 | -62.5 |
94570 | 500 | 7.3 | 2500 | 35.0 | 1500 | -62.7 |
94571 | 500 | 7.3 | 2500 | 35.0 | 1525 | -62.7 |
94572 | 500 | 7.3 | 2500 | 35.0 | 1550 | -62.7 |
93546 | 1300 | 7.6 | 6500 | 35.5 | 1885 | -63.4 |
93621 | 1200 | 7.0 | 6000 | 35.2 | 1980 | -63.5 |
94315 | 600 | 4.9 | 3000 | 34.3 | 360 | -63.8 |
93760 | 1050 | 6.1 | 5250 | 35.2 | 2444 | -64.4 |
93857 | 950 | 5.5 | 4750 | 34.9 | 2115 | -64.4 |
93580 | 1250 | 7.3 | 6250 | 35.8 | 1798 | -64.4 |
93581 | 1250 | 7.3 | 6250 | 35.8 | 1860 | -64.4 |
94402 | 550 | 10.4 | 2750 | 37.6 | 54 | -64.9 |
94580 | 500 | 7.3 | 2500 | 36.2 | 1750 | -65.1 |
93812 | 950 | 7.7 | 4750 | 36.4 | 0 | -65.1 |
93813 | 950 | 7.7 | 4750 | 36.4 | 47 | -65.1 |
93762 | 1000 | 8.1 | 5000 | 36.8 | 50 | -65.5 |
93668 | 1150 | 6.7 | 5750 | 36.1 | 2337 | -65.5 |
93977 | 850 | 4.9 | 4250 | 35.4 | 2184 | -65.9 |
94573 | 500 | 7.3 | 2500 | 36.6 | 1575 | -65.9 |
94574 | 500 | 7.3 | 2500 | 36.6 | 1600 | -65.9 |
94575 | 500 | 7.3 | 2500 | 36.6 | 1625 | -65.9 |
94576 | 500 | 7.3 | 2500 | 36.6 | 1650 | -65.9 |
94577 | 500 | 7.3 | 2500 | 36.6 | 1675 | -65.9 |
94578 | 500 | 7.3 | 2500 | 36.6 | 1700 | -65.9 |
94579 | 500 | 7.3 | 2500 | 36.6 | 1725 | -65.9 |
94141 | 700 | 5.7 | 3500 | 35.9 | 315 | -66.0 |
93669 | 1100 | 8.9 | 5500 | 38.0 | 0 | -67.1 |
94143 | 700 | 5.7 | 3500 | 36.4 | 385 | -67.2 |
94226 | 650 | 5.3 | 3250 | 36.3 | 416 | -67.3 |
93915 | 900 | 5.2 | 4500 | 36.3 | 2160 | -67.4 |
94414 | 550 | 4.5 | 2750 | 36.0 | 378 | -67.5 |
94415 | 550 | 4.5 | 2750 | 36.0 | 405 | -67.5 |
94416 | 550 | 4.5 | 2750 | 36.0 | 432 | -67.5 |
94417 | 550 | 4.5 | 2750 | 36.0 | 459 | -67.5 |
93803 | 1000 | 5.8 | 5000 | 36.7 | 2100 | -67.6 |
93811 | 1000 | 5.8 | 5000 | 37.0 | 2500 | -68.2 |
94318 | 600 | 4.9 | 3000 | 36.7 | 450 | -68.5 |
93544 | 1300 | 7.6 | 6500 | 38.3 | 1755 | -69.0 |
93545 | 1300 | 7.6 | 6500 | 38.3 | 1820 | -69.0 |
94118 | 750 | 4.4 | 3750 | 36.8 | 2257 | -69.2 |
94223 | 650 | 5.3 | 3250 | 37.8 | 320 | -70.4 |
94418 | 550 | 4.5 | 2750 | 37.5 | 486 | -70.4 |
94067 | 750 | 6.1 | 3750 | 38.7 | 370 | -71.2 |
93714 | 1050 | 8.5 | 5250 | 40.0 | 52 | -71.5 |
94383 | 600 | 3.6 | 3000 | 38.2 | 2400 | -72.7 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
93655 | 1150 | 16.8 | 5750 | 19.8 | 1596 | -22.8 |
93699 | 1100 | 16.1 | 5500 | 20.7 | 1650 | -25.4 |
93850 | 950 | 13.9 | 4750 | 20.0 | 1786 | -26.1 |
93746 | 1050 | 15.4 | 5250 | 21.7 | 1716 | -28.1 |
93796 | 1000 | 14.6 | 5000 | 22.6 | 1750 | -30.6 |
93795 | 1000 | 14.6 | 5000 | 22.8 | 1700 | -31.0 |
93849 | 950 | 13.9 | 4750 | 24.0 | 1739 | -34.1 |
93657 | 1150 | 15.9 | 5750 | 27.1 | 1710 | -38.3 |
93701 | 1100 | 15.2 | 5500 | 27.3 | 1760 | -39.3 |
93572 | 1250 | 18.3 | 6250 | 33.0 | 1302 | -47.8 |
93578 | 1250 | 10.3 | 6250 | 30.1 | 1674 | -49.9 |
93658 | 1150 | 9.9 | 5750 | 30.4 | 1767 | -51.0 |
94284 | 650 | 5.4 | 3250 | 29.4 | 2272 | -53.3 |
94380 | 600 | 5.3 | 3000 | 29.8 | 2310 | -54.3 |
94607 | 500 | 4.1 | 2500 | 29.8 | 2425 | -55.5 |
94487 | 550 | 5.4 | 2750 | 30.5 | 2349 | -55.7 |
93571 | 1250 | 18.3 | 6250 | 38.0 | 1240 | -57.7 |
93609 | 1200 | 17.5 | 6000 | 37.9 | 1260 | -58.3 |
93692 | 1100 | 16.1 | 5500 | 37.3 | 1265 | -58.5 |
93585 | 1250 | 7.3 | 6250 | 33.2 | 2108 | -59.1 |
93586 | 1250 | 7.3 | 6250 | 33.2 | 2170 | -59.1 |
93787 | 1000 | 14.6 | 5000 | 37.0 | 1300 | -59.4 |
94629 | 500 | 9.0 | 2500 | 34.2 | 2975 | -59.4 |
93583 | 1250 | 7.3 | 6250 | 33.8 | 1984 | -60.4 |
93584 | 1250 | 7.3 | 6250 | 33.8 | 2046 | -60.4 |
93840 | 950 | 13.9 | 4750 | 37.3 | 1316 | -60.6 |
93623 | 1200 | 7.0 | 6000 | 34.6 | 2100 | -62.2 |
93624 | 1200 | 7.0 | 6000 | 34.6 | 2160 | -62.2 |
93625 | 1200 | 7.0 | 6000 | 34.6 | 2220 | -62.2 |
93626 | 1200 | 7.0 | 6000 | 34.6 | 2280 | -62.2 |
93579 | 1250 | 7.7 | 6250 | 35.0 | 1736 | -62.4 |
93649 | 1150 | 16.8 | 5750 | 40.0 | 1254 | -63.2 |
93622 | 1200 | 7.0 | 6000 | 35.2 | 2040 | -63.5 |
94285 | 650 | 4.7 | 3250 | 34.3 | 2304 | -63.9 |
94509 | 550 | 9.9 | 2750 | 36.9 | 2943 | -63.9 |
93957 | 850 | 12.4 | 4250 | 38.4 | 1344 | -64.3 |
94381 | 600 | 4.5 | 3000 | 34.8 | 2340 | -65.1 |
94197 | 700 | 4.5 | 3500 | 34.9 | 2275 | -65.2 |
94351 | 600 | 8.8 | 3000 | 37.0 | 1440 | -65.2 |
93664 | 1150 | 6.7 | 5750 | 36.1 | 2109 | -65.5 |
93665 | 1150 | 6.7 | 5750 | 36.1 | 2166 | -65.5 |
93666 | 1150 | 6.7 | 5750 | 36.1 | 2223 | -65.5 |
93667 | 1150 | 6.7 | 5750 | 36.1 | 2280 | -65.5 |
94023 | 800 | 11.7 | 4000 | 38.8 | 1360 | -65.8 |
94608 | 500 | 3.7 | 2500 | 34.8 | 2450 | -65.9 |
94454 | 550 | 8.0 | 2750 | 37.1 | 1458 | -66.1 |
93662 | 1150 | 6.7 | 5750 | 36.5 | 1995 | -66.3 |
93759 | 1050 | 6.1 | 5250 | 36.5 | 2392 | -66.8 |
93663 | 1150 | 6.7 | 5750 | 36.8 | 2052 | -66.9 |
94172 | 700 | 10.2 | 3500 | 38.6 | 1400 | -66.9 |
94569 | 500 | 7.3 | 2500 | 37.4 | 1475 | -67.5 |
93706 | 1100 | 6.4 | 5500 | 37.3 | 2035 | -68.1 |
93712 | 1100 | 6.4 | 5500 | 37.3 | 2365 | -68.1 |
93810 | 1000 | 5.8 | 5000 | 37.0 | 2450 | -68.2 |
93814 | 950 | 7.7 | 4750 | 38.1 | 94 | -68.5 |
93707 | 1100 | 6.4 | 5500 | 37.7 | 2090 | -69.1 |
93708 | 1100 | 6.4 | 5500 | 37.7 | 2145 | -69.1 |
93709 | 1100 | 6.4 | 5500 | 37.7 | 2200 | -69.1 |
93710 | 1100 | 6.4 | 5500 | 37.7 | 2255 | -69.1 |
93711 | 1100 | 6.4 | 5500 | 37.7 | 2310 | -69.1 |
93809 | 1000 | 5.8 | 5000 | 37.5 | 2400 | -69.2 |
94304 | 600 | 8.5 | 3000 | 38.8 | 30 | -69.2 |
94628 | 500 | 9.0 | 2500 | 39.2 | 2950 | -69.4 |
93753 | 1050 | 6.1 | 5250 | 37.8 | 2080 | -69.5 |
93867 | 900 | 7.3 | 4500 | 38.4 | 0 | -69.6 |
93868 | 900 | 7.3 | 4500 | 38.4 | 45 | -69.6 |
93869 | 900 | 7.3 | 4500 | 38.4 | 90 | -69.6 |
94213 | 650 | 7.9 | 3250 | 38.9 | 0 | -69.9 |
94257 | 650 | 9.5 | 3250 | 40.0 | 1408 | -70.5 |
94490 | 550 | 3.5 | 2750 | 37.1 | 2430 | -70.7 |
94065 | 750 | 6.1 | 3750 | 38.4 | 296 | -70.7 |
94066 | 750 | 6.1 | 3750 | 38.4 | 333 | -70.7 |
93870 | 900 | 7.3 | 4500 | 39.2 | 135 | -71.1 |
94045 | 800 | 4.7 | 4000 | 38.4 | 2240 | -72.1 |
93864 | 950 | 5.5 | 4750 | 38.9 | 2444 | -72.4 |
93865 | 950 | 5.5 | 4750 | 38.9 | 2491 | -72.4 |
93866 | 950 | 5.5 | 4750 | 38.9 | 2538 | -72.4 |
94382 | 600 | 4.0 | 3000 | 38.2 | 2370 | -72.4 |
93754 | 1050 | 6.1 | 5250 | 39.5 | 2132 | -72.9 |
93755 | 1050 | 6.1 | 5250 | 39.5 | 2184 | -72.9 |
93756 | 1050 | 6.1 | 5250 | 39.5 | 2236 | -72.9 |
93757 | 1050 | 6.1 | 5250 | 39.5 | 2288 | -72.9 |
93758 | 1050 | 6.1 | 5250 | 39.5 | 2340 | -72.9 |
94413 | 550 | 4.5 | 2750 | 39.1 | 351 | -73.7 |
94314 | 600 | 4.9 | 3000 | 39.3 | 330 | -73.8 |
93863 | 950 | 5.5 | 4750 | 39.8 | 2397 | -74.0 |
93858 | 950 | 5.5 | 4750 | 39.9 | 2162 | -74.3 |
94286 | 650 | 4.0 | 3250 | 39.2 | 2336 | -74.4 |
94525 | 500 | 4.1 | 2500 | 39.6 | 375 | -75.1 |
94526 | 500 | 4.1 | 2500 | 39.6 | 400 | -75.1 |
94527 | 500 | 4.1 | 2500 | 39.6 | 425 | -75.1 |
94528 | 500 | 4.1 | 2500 | 39.6 | 450 | -75.1 |
94529 | 500 | 4.1 | 2500 | 39.6 | 475 | -75.1 |
94530 | 500 | 4.1 | 2500 | 39.6 | 500 | -75.1 |
94531 | 500 | 4.1 | 2500 | 39.6 | 525 | -75.1 |
94198 | 700 | 4.1 | 3500 | 39.9 | 2310 | -75.6 |
94609 | 500 | 3.2 | 2500 | 39.8 | 2475 | -76.4 |
Overall score = score_ratio - 2 * repetitive DNA content