Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign11 - back to list
Summary
./analyse_probe_search_results : Mon Mar 12 15:53:06 2007
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign11 assembly : NCBIM36 bias : 5prime chromosome : X id : 14 strand : 1 ------------- Design window length: 16430bp All jobs for probe design are successful - total: 161 Fetched conf : Exonerate mouse_NCBIM36 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM36/genome/softmasked_dusted Fetched 3207 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 5prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 3207/3207 Putative probes that are unique : 214/3207 Putative probes exceeding selection criteria : 502/3207 (both unique and not unique) Putative probes with successfully-picked primers: 487/502 Identified 79 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
19306 | 1300 | 6500 | - | 8580 |
19307 | 1300 | 6500 | - | 8710 |
19426 | 1250 | 6250 | - | 8625 |
19427 | 1250 | 6250 | - | 8750 |
19428 | 1250 | 6250 | - | 8875 |
19551 | 1200 | 6000 | - | 8640 |
19552 | 1200 | 6000 | - | 8760 |
19553 | 1200 | 6000 | - | 8880 |
19681 | 1150 | 5750 | - | 8625 |
19682 | 1150 | 5750 | - | 8740 |
19683 | 1150 | 5750 | - | 8855 |
19684 | 1150 | 5750 | - | 8970 |
19817 | 1100 | 5500 | - | 8580 |
19818 | 1100 | 5500 | - | 8690 |
19819 | 1100 | 5500 | - | 8800 |
19820 | 1100 | 5500 | - | 8910 |
19821 | 1100 | 5500 | - | 9020 |
19961 | 1050 | 5250 | - | 8610 |
19962 | 1050 | 5250 | - | 8715 |
19963 | 1050 | 5250 | - | 8820 |
19964 | 1050 | 5250 | - | 8925 |
19965 | 1050 | 5250 | - | 9030 |
20112 | 1000 | 5000 | - | 8600 |
20113 | 1000 | 5000 | - | 8700 |
20114 | 1000 | 5000 | - | 8800 |
20115 | 1000 | 5000 | - | 8900 |
20116 | 1000 | 5000 | - | 9000 |
20117 | 1000 | 5000 | - | 9100 |
20272 | 950 | 4750 | - | 8645 |
20273 | 950 | 4750 | - | 8740 |
20274 | 950 | 4750 | - | 8835 |
20275 | 950 | 4750 | - | 8930 |
20276 | 950 | 4750 | - | 9025 |
20277 | 950 | 4750 | - | 9120 |
20440 | 900 | 4500 | - | 8640 |
20441 | 900 | 4500 | - | 8730 |
20442 | 900 | 4500 | - | 8820 |
20443 | 900 | 4500 | - | 8910 |
20444 | 900 | 4500 | - | 9000 |
20445 | 900 | 4500 | - | 9090 |
20446 | 900 | 4500 | - | 9180 |
20618 | 850 | 4250 | - | 8585 |
20619 | 850 | 4250 | - | 8670 |
20620 | 850 | 4250 | - | 8755 |
20621 | 850 | 4250 | - | 8840 |
20622 | 850 | 4250 | - | 8925 |
20623 | 850 | 4250 | - | 9010 |
20624 | 850 | 4250 | - | 9095 |
20625 | 850 | 4250 | - | 9180 |
20626 | 850 | 4250 | - | 9265 |
20809 | 800 | 4000 | - | 8640 |
20810 | 800 | 4000 | - | 8720 |
20811 | 800 | 4000 | - | 8800 |
20812 | 800 | 4000 | - | 8880 |
20813 | 800 | 4000 | - | 8960 |
20814 | 800 | 4000 | - | 9040 |
20815 | 800 | 4000 | - | 9120 |
20816 | 800 | 4000 | - | 9200 |
20817 | 800 | 4000 | - | 9280 |
21012 | 750 | 3750 | - | 8625 |
21013 | 750 | 3750 | - | 8700 |
21014 | 750 | 3750 | - | 8775 |
21015 | 750 | 3750 | - | 8850 |
21016 | 750 | 3750 | - | 8925 |
21017 | 750 | 3750 | - | 9000 |
21018 | 750 | 3750 | - | 9075 |
21019 | 750 | 3750 | - | 9150 |
21020 | 750 | 3750 | - | 9225 |
21021 | 750 | 3750 | - | 9300 |
21022 | 750 | 3750 | - | 9375 |
21230 | 700 | 3500 | - | 8610 |
21231 | 700 | 3500 | - | 8680 |
21232 | 700 | 3500 | - | 8750 |
21233 | 700 | 3500 | - | 8820 |
21234 | 700 | 3500 | - | 8890 |
21235 | 700 | 3500 | - | 8960 |
21236 | 700 | 3500 | - | 9030 |
21237 | 700 | 3500 | - | 9100 |
21238 | 700 | 3500 | - | 9170 |
21239 | 700 | 3500 | - | 9240 |
21240 | 700 | 3500 | - | 9310 |
21241 | 700 | 3500 | - | 9380 |
21464 | 650 | 3250 | - | 8580 |
21465 | 650 | 3250 | - | 8645 |
21466 | 650 | 3250 | - | 8710 |
21467 | 650 | 3250 | - | 8775 |
21468 | 650 | 3250 | - | 8840 |
21469 | 650 | 3250 | - | 8905 |
21470 | 650 | 3250 | - | 8970 |
21471 | 650 | 3250 | - | 9035 |
21472 | 650 | 3250 | - | 9100 |
21473 | 650 | 3250 | - | 9165 |
21474 | 650 | 3250 | - | 9230 |
21475 | 650 | 3250 | - | 9295 |
21476 | 650 | 3250 | - | 9360 |
21477 | 650 | 3250 | - | 9425 |
21604 | 600 | 3000 | - | 1740 |
21718 | 600 | 3000 | - | 8580 |
21719 | 600 | 3000 | - | 8640 |
21720 | 600 | 3000 | - | 8700 |
21721 | 600 | 3000 | - | 8760 |
21722 | 600 | 3000 | - | 8820 |
21723 | 600 | 3000 | - | 8880 |
21724 | 600 | 3000 | - | 8940 |
21725 | 600 | 3000 | - | 9000 |
21726 | 600 | 3000 | - | 9060 |
21727 | 600 | 3000 | - | 9120 |
21728 | 600 | 3000 | - | 9180 |
21729 | 600 | 3000 | - | 9240 |
21730 | 600 | 3000 | - | 9300 |
21731 | 600 | 3000 | - | 9360 |
21732 | 600 | 3000 | - | 9420 |
21733 | 600 | 3000 | - | 9480 |
21748 | 600 | 3000 | - | 10380 |
21871 | 550 | 2750 | - | 1760 |
21995 | 550 | 2750 | - | 8580 |
21996 | 550 | 2750 | - | 8635 |
21997 | 550 | 2750 | - | 8690 |
21998 | 550 | 2750 | - | 8745 |
21999 | 550 | 2750 | - | 8800 |
22000 | 550 | 2750 | - | 8855 |
22001 | 550 | 2750 | - | 8910 |
22002 | 550 | 2750 | - | 8965 |
22003 | 550 | 2750 | - | 9020 |
22004 | 550 | 2750 | - | 9075 |
22005 | 550 | 2750 | - | 9130 |
22006 | 550 | 2750 | - | 9185 |
22007 | 550 | 2750 | - | 9240 |
22008 | 550 | 2750 | - | 9295 |
22009 | 550 | 2750 | - | 9350 |
22010 | 550 | 2750 | - | 9405 |
22011 | 550 | 2750 | - | 9460 |
22012 | 550 | 2750 | - | 9515 |
22013 | 550 | 2750 | - | 9570 |
22028 | 550 | 2750 | - | 10395 |
22029 | 550 | 2750 | - | 10450 |
22163 | 500 | 2500 | - | 1750 |
22164 | 500 | 2500 | - | 1800 |
22165 | 500 | 2500 | - | 1850 |
22244 | 500 | 2500 | - | 5800 |
22273 | 500 | 2500 | - | 7250 |
22286 | 500 | 2500 | - | 7900 |
22287 | 500 | 2500 | - | 7950 |
22300 | 500 | 2500 | - | 8600 |
22301 | 500 | 2500 | - | 8650 |
22302 | 500 | 2500 | - | 8700 |
22303 | 500 | 2500 | - | 8750 |
22304 | 500 | 2500 | - | 8800 |
22305 | 500 | 2500 | - | 8850 |
22306 | 500 | 2500 | - | 8900 |
22307 | 500 | 2500 | - | 8950 |
22308 | 500 | 2500 | - | 9000 |
22309 | 500 | 2500 | - | 9050 |
22310 | 500 | 2500 | - | 9100 |
22311 | 500 | 2500 | - | 9150 |
22312 | 500 | 2500 | - | 9200 |
22313 | 500 | 2500 | - | 9250 |
22314 | 500 | 2500 | - | 9300 |
22315 | 500 | 2500 | - | 9350 |
22316 | 500 | 2500 | - | 9400 |
22317 | 500 | 2500 | - | 9450 |
22318 | 500 | 2500 | - | 9500 |
22319 | 500 | 2500 | - | 9550 |
22320 | 500 | 2500 | - | 9600 |
22335 | 500 | 2500 | - | 10350 |
22336 | 500 | 2500 | - | 10400 |
22337 | 500 | 2500 | - | 10450 |
22338 | 500 | 2500 | - | 10500 |
19308 | 1300 | 6500 | 0.2 | 8840 |
21944 | 550 | 2750 | 0.4 | 5775 |
21478 | 650 | 3250 | 0.5 | 9490 |
20808 | 800 | 4000 | 0.5 | 8560 |
21734 | 600 | 3000 | 0.5 | 9540 |
19309 | 1300 | 6500 | 1.1 | 8970 |
19429 | 1250 | 6250 | 1.1 | 9000 |
19554 | 1200 | 6000 | 1.2 | 9000 |
19685 | 1150 | 5750 | 1.2 | 9085 |
19822 | 1100 | 5500 | 1.3 | 9130 |
19966 | 1050 | 5250 | 1.3 | 9135 |
20118 | 1000 | 5000 | 1.4 | 9200 |
20278 | 950 | 4750 | 1.5 | 9215 |
20279 | 950 | 4750 | 1.5 | 9310 |
21358 | 650 | 3250 | 1.5 | 1690 |
20447 | 900 | 4500 | 1.6 | 9270 |
20448 | 900 | 4500 | 1.6 | 9360 |
20627 | 850 | 4250 | 1.6 | 9350 |
21603 | 600 | 3000 | 1.7 | 1680 |
20818 | 800 | 4000 | 1.8 | 9360 |
20819 | 800 | 4000 | 1.8 | 9440 |
21870 | 550 | 2750 | 1.8 | 1705 |
21242 | 700 | 3500 | 1.9 | 9450 |
21023 | 750 | 3750 | 1.9 | 9450 |
21024 | 750 | 3750 | 1.9 | 9525 |
21243 | 700 | 3500 | 2.0 | 9520 |
22162 | 500 | 2500 | 2.0 | 1700 |
21479 | 650 | 3250 | 2.2 | 9555 |
21480 | 650 | 3250 | 2.2 | 9620 |
21983 | 550 | 2750 | 2.2 | 7920 |
21735 | 600 | 3000 | 2.3 | 9600 |
21736 | 600 | 3000 | 2.3 | 9660 |
22014 | 550 | 2750 | 2.5 | 9625 |
22015 | 550 | 2750 | 2.5 | 9680 |
22321 | 500 | 2500 | 2.6 | 9650 |
22322 | 500 | 2500 | 2.8 | 9700 |
22323 | 500 | 2500 | 2.8 | 9750 |
21970 | 550 | 2750 | 3.5 | 7205 |
22245 | 500 | 2500 | 3.6 | 5850 |
22347 | 500 | 2500 | 5.0 | 10950 |
21869 | 550 | 2750 | 5.3 | 1650 |
22161 | 500 | 2500 | 5.8 | 1650 |
22357 | 500 | 2500 | 6.8 | 11450 |
21357 | 650 | 3250 | 8.3 | 1625 |
22288 | 500 | 2500 | 8.4 | 8000 |
22216 | 500 | 2500 | 22.2 | 4400 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
19669 | 1150 | 32.5 | 5750 | - | 7245 | 32.5 |
20130 | 1000 | 32.5 | 5000 | - | 10400 | 32.5 |
19805 | 1100 | 31.1 | 5500 | - | 7260 | 31.1 |
20290 | 950 | 30.8 | 4750 | - | 10355 | 30.8 |
20291 | 950 | 30.8 | 4750 | - | 10450 | 30.8 |
19978 | 1050 | 34.1 | 5250 | 1.9 | 10395 | 30.3 |
19833 | 1100 | 32.9 | 5500 | 1.4 | 10340 | 30.2 |
19539 | 1200 | 33.9 | 6000 | 2.0 | 7200 | 29.9 |
19948 | 1050 | 29.7 | 5250 | - | 7245 | 29.7 |
19949 | 1050 | 29.7 | 5250 | - | 7350 | 29.7 |
20459 | 900 | 29.2 | 4500 | - | 10350 | 29.2 |
20460 | 900 | 29.2 | 4500 | - | 10440 | 29.2 |
19806 | 1100 | 31.1 | 5500 | 1.1 | 7370 | 28.9 |
19320 | 1300 | 37.8 | 6500 | 4.5 | 10400 | 28.7 |
19321 | 1300 | 37.8 | 6500 | 4.5 | 10530 | 28.7 |
19322 | 1300 | 37.8 | 6500 | 4.5 | 10660 | 28.7 |
19415 | 1250 | 35.3 | 6250 | 3.4 | 7250 | 28.6 |
20099 | 1000 | 28.2 | 5000 | - | 7300 | 28.2 |
20100 | 1000 | 28.2 | 5000 | - | 7400 | 28.2 |
20461 | 900 | 29.2 | 4500 | 0.6 | 10530 | 28.1 |
20639 | 850 | 27.6 | 4250 | - | 10370 | 27.6 |
20640 | 850 | 27.6 | 4250 | - | 10455 | 27.6 |
20641 | 850 | 27.6 | 4250 | - | 10540 | 27.6 |
19440 | 1250 | 36.3 | 6250 | 4.7 | 10375 | 26.9 |
19441 | 1250 | 36.3 | 6250 | 4.7 | 10500 | 26.9 |
19442 | 1250 | 36.3 | 6250 | 4.7 | 10625 | 26.9 |
20258 | 950 | 26.8 | 4750 | - | 7315 | 26.8 |
20259 | 950 | 26.8 | 4750 | - | 7410 | 26.8 |
20260 | 950 | 26.8 | 4750 | - | 7505 | 26.8 |
20257 | 950 | 26.8 | 4750 | 0.4 | 7220 | 26.0 |
20831 | 800 | 26.0 | 4000 | - | 10400 | 26.0 |
20832 | 800 | 26.0 | 4000 | - | 10480 | 26.0 |
20833 | 800 | 26.0 | 4000 | - | 10560 | 26.0 |
20425 | 900 | 25.4 | 4500 | - | 7290 | 25.4 |
20426 | 900 | 25.4 | 4500 | - | 7380 | 25.4 |
20427 | 900 | 25.4 | 4500 | - | 7470 | 25.4 |
20271 | 950 | 28.3 | 4750 | 1.5 | 8550 | 25.3 |
20428 | 900 | 25.4 | 4500 | 0.2 | 7560 | 25.0 |
21035 | 750 | 24.4 | 3750 | - | 10350 | 24.4 |
21036 | 750 | 24.4 | 3750 | - | 10425 | 24.4 |
21037 | 750 | 24.4 | 3750 | - | 10500 | 24.4 |
21038 | 750 | 24.4 | 3750 | - | 10575 | 24.4 |
21039 | 750 | 24.4 | 3750 | - | 10650 | 24.4 |
20602 | 850 | 24.0 | 4250 | - | 7225 | 24.0 |
20603 | 850 | 24.0 | 4250 | - | 7310 | 24.0 |
20604 | 850 | 24.0 | 4250 | - | 7395 | 24.0 |
20605 | 850 | 24.0 | 4250 | - | 7480 | 24.0 |
20606 | 850 | 24.0 | 4250 | - | 7565 | 24.0 |
20439 | 900 | 26.8 | 4500 | 1.6 | 8550 | 23.7 |
20722 | 800 | 26.1 | 4000 | 1.2 | 1680 | 23.6 |
19670 | 1150 | 32.5 | 5750 | 4.5 | 7360 | 23.4 |
19550 | 1200 | 30.8 | 6000 | 3.7 | 8520 | 23.4 |
21132 | 700 | 22.9 | 3500 | - | 1750 | 22.9 |
21255 | 700 | 22.7 | 3500 | - | 10360 | 22.7 |
21256 | 700 | 22.7 | 3500 | - | 10430 | 22.7 |
21257 | 700 | 22.7 | 3500 | - | 10500 | 22.7 |
21258 | 700 | 22.7 | 3500 | - | 10570 | 22.7 |
21259 | 700 | 22.7 | 3500 | - | 10640 | 22.7 |
21260 | 700 | 22.7 | 3500 | - | 10710 | 22.7 |
20792 | 800 | 22.6 | 4000 | - | 7280 | 22.6 |
20793 | 800 | 22.6 | 4000 | - | 7360 | 22.6 |
20794 | 800 | 22.6 | 4000 | - | 7440 | 22.6 |
20795 | 800 | 22.6 | 4000 | - | 7520 | 22.6 |
20796 | 800 | 22.6 | 4000 | - | 7600 | 22.6 |
20834 | 800 | 26.0 | 4000 | 1.9 | 10640 | 22.2 |
21359 | 650 | 21.2 | 3250 | - | 1755 | 21.2 |
21360 | 650 | 21.2 | 3250 | - | 1820 | 21.2 |
20994 | 750 | 21.2 | 3750 | - | 7275 | 21.2 |
20995 | 750 | 21.2 | 3750 | - | 7350 | 21.2 |
20996 | 750 | 21.2 | 3750 | - | 7425 | 21.2 |
20997 | 750 | 21.2 | 3750 | - | 7500 | 21.2 |
20998 | 750 | 21.2 | 3750 | - | 7575 | 21.2 |
20999 | 750 | 21.2 | 3750 | - | 7650 | 21.2 |
21492 | 650 | 21.1 | 3250 | - | 10400 | 21.1 |
21493 | 650 | 21.1 | 3250 | - | 10465 | 21.1 |
21494 | 650 | 21.1 | 3250 | - | 10530 | 21.1 |
21495 | 650 | 21.1 | 3250 | - | 10595 | 21.1 |
21496 | 650 | 21.1 | 3250 | - | 10660 | 21.1 |
21497 | 650 | 21.1 | 3250 | - | 10725 | 21.1 |
19950 | 1050 | 29.7 | 5250 | 4.5 | 7455 | 20.7 |
21444 | 650 | 19.9 | 3250 | - | 7280 | 19.9 |
21211 | 700 | 19.8 | 3500 | - | 7280 | 19.8 |
21212 | 700 | 19.8 | 3500 | - | 7350 | 19.8 |
21213 | 700 | 19.8 | 3500 | - | 7420 | 19.8 |
21214 | 700 | 19.8 | 3500 | - | 7490 | 19.8 |
21215 | 700 | 19.8 | 3500 | - | 7560 | 19.8 |
21216 | 700 | 19.8 | 3500 | - | 7630 | 19.8 |
21217 | 700 | 19.8 | 3500 | - | 7700 | 19.8 |
21605 | 600 | 19.6 | 3000 | - | 1800 | 19.6 |
21606 | 600 | 19.6 | 3000 | - | 1860 | 19.6 |
21749 | 600 | 19.5 | 3000 | - | 10440 | 19.5 |
21750 | 600 | 19.5 | 3000 | - | 10500 | 19.5 |
21751 | 600 | 19.5 | 3000 | - | 10560 | 19.5 |
21752 | 600 | 19.5 | 3000 | - | 10620 | 19.5 |
21753 | 600 | 19.5 | 3000 | - | 10680 | 19.5 |
21754 | 600 | 19.5 | 3000 | - | 10740 | 19.5 |
21755 | 600 | 19.5 | 3000 | - | 10800 | 19.5 |
20129 | 1000 | 19.5 | 5000 | - | 10300 | 19.5 |
20830 | 800 | 18.8 | 4000 | - | 10320 | 18.8 |
21011 | 750 | 22.3 | 3750 | 1.9 | 8550 | 18.6 |
21696 | 600 | 18.4 | 3000 | - | 7260 | 18.4 |
21697 | 600 | 18.4 | 3000 | - | 7320 | 18.4 |
21445 | 650 | 18.4 | 3250 | - | 7345 | 18.4 |
21446 | 650 | 18.4 | 3250 | - | 7410 | 18.4 |
21447 | 650 | 18.4 | 3250 | - | 7475 | 18.4 |
21448 | 650 | 18.4 | 3250 | - | 7540 | 18.4 |
21449 | 650 | 18.4 | 3250 | - | 7605 | 18.4 |
21450 | 650 | 18.4 | 3250 | - | 7670 | 18.4 |
21451 | 650 | 18.4 | 3250 | - | 7735 | 18.4 |
21452 | 650 | 18.4 | 3250 | - | 7800 | 18.4 |
21872 | 550 | 18.0 | 2750 | - | 1815 | 18.0 |
21873 | 550 | 18.0 | 2750 | - | 1870 | 18.0 |
21874 | 550 | 18.0 | 2750 | - | 1925 | 18.0 |
19977 | 1050 | 17.9 | 5250 | - | 10290 | 17.9 |
22030 | 550 | 17.9 | 2750 | - | 10505 | 17.9 |
22031 | 550 | 17.9 | 2750 | - | 10560 | 17.9 |
22032 | 550 | 17.9 | 2750 | - | 10615 | 17.9 |
22033 | 550 | 17.9 | 2750 | - | 10670 | 17.9 |
22034 | 550 | 17.9 | 2750 | - | 10725 | 17.9 |
22035 | 550 | 17.9 | 2750 | - | 10780 | 17.9 |
22036 | 550 | 17.9 | 2750 | - | 10835 | 17.9 |
21210 | 700 | 21.5 | 3500 | 2.0 | 7210 | 17.5 |
19680 | 1150 | 26.7 | 5750 | 4.7 | 8510 | 17.4 |
21443 | 650 | 19.9 | 3250 | 1.4 | 7215 | 17.2 |
20797 | 800 | 22.6 | 4000 | 2.8 | 7680 | 17.1 |
21698 | 600 | 16.9 | 3000 | - | 7380 | 16.9 |
21699 | 600 | 16.9 | 3000 | - | 7440 | 16.9 |
21700 | 600 | 16.9 | 3000 | - | 7500 | 16.9 |
21701 | 600 | 16.9 | 3000 | - | 7560 | 16.9 |
21702 | 600 | 16.9 | 3000 | - | 7620 | 16.9 |
21703 | 600 | 16.9 | 3000 | - | 7680 | 16.9 |
21704 | 600 | 16.9 | 3000 | - | 7740 | 16.9 |
21705 | 600 | 16.9 | 3000 | - | 7800 | 16.9 |
21491 | 650 | 16.9 | 3250 | - | 10335 | 16.9 |
21971 | 550 | 16.9 | 2750 | - | 7260 | 16.9 |
21972 | 550 | 16.9 | 2750 | - | 7315 | 16.9 |
21973 | 550 | 16.9 | 2750 | - | 7370 | 16.9 |
20919 | 750 | 24.5 | 3750 | 3.9 | 1650 | 16.8 |
21000 | 750 | 21.2 | 3750 | 2.3 | 7725 | 16.7 |
22027 | 550 | 16.5 | 2750 | - | 10340 | 16.5 |
21218 | 700 | 19.8 | 3500 | 1.7 | 7770 | 16.3 |
22166 | 500 | 16.3 | 2500 | - | 1900 | 16.3 |
22167 | 500 | 16.3 | 2500 | - | 1950 | 16.3 |
21706 | 600 | 16.9 | 3000 | 0.3 | 7860 | 16.3 |
22339 | 500 | 16.2 | 2500 | - | 10550 | 16.2 |
22340 | 500 | 16.2 | 2500 | - | 10600 | 16.2 |
22341 | 500 | 16.2 | 2500 | - | 10650 | 16.2 |
22342 | 500 | 16.2 | 2500 | - | 10700 | 16.2 |
22343 | 500 | 16.2 | 2500 | - | 10750 | 16.2 |
22344 | 500 | 16.2 | 2500 | - | 10800 | 16.2 |
22345 | 500 | 16.2 | 2500 | - | 10850 | 16.2 |
22346 | 500 | 16.2 | 2500 | - | 10900 | 16.2 |
21974 | 550 | 15.5 | 2750 | - | 7425 | 15.5 |
21975 | 550 | 15.5 | 2750 | - | 7480 | 15.5 |
21976 | 550 | 15.5 | 2750 | - | 7535 | 15.5 |
21977 | 550 | 15.5 | 2750 | - | 7590 | 15.5 |
21978 | 550 | 15.5 | 2750 | - | 7645 | 15.5 |
21979 | 550 | 15.5 | 2750 | - | 7700 | 15.5 |
21980 | 550 | 15.5 | 2750 | - | 7755 | 15.5 |
21981 | 550 | 15.5 | 2750 | - | 7810 | 15.5 |
21982 | 550 | 15.5 | 2750 | - | 7865 | 15.5 |
22201 | 500 | 15.3 | 2500 | - | 3650 | 15.3 |
22274 | 500 | 15.3 | 2500 | - | 7300 | 15.3 |
22275 | 500 | 15.3 | 2500 | - | 7350 | 15.3 |
22276 | 500 | 15.3 | 2500 | - | 7400 | 15.3 |
22277 | 500 | 14.1 | 2500 | - | 7450 | 14.1 |
22278 | 500 | 14.1 | 2500 | - | 7500 | 14.1 |
22279 | 500 | 14.1 | 2500 | - | 7550 | 14.1 |
22280 | 500 | 14.1 | 2500 | - | 7600 | 14.1 |
22281 | 500 | 14.1 | 2500 | - | 7650 | 14.1 |
22282 | 500 | 14.1 | 2500 | - | 7700 | 14.1 |
22283 | 500 | 14.1 | 2500 | - | 7750 | 14.1 |
22284 | 500 | 14.1 | 2500 | - | 7800 | 14.1 |
22285 | 500 | 14.1 | 2500 | - | 7850 | 14.1 |
21747 | 600 | 14.1 | 3000 | - | 10320 | 14.1 |
20638 | 850 | 13.5 | 4250 | - | 10285 | 13.5 |
21229 | 700 | 19.7 | 3500 | 3.4 | 8540 | 12.8 |
19695 | 1150 | 12.5 | 5750 | - | 10235 | 12.5 |
19564 | 1200 | 12.5 | 6000 | - | 10200 | 12.5 |
20289 | 950 | 12.1 | 4750 | - | 10260 | 12.1 |
19832 | 1100 | 12.0 | 5500 | - | 10230 | 12.0 |
21254 | 700 | 11.9 | 3500 | - | 10290 | 11.9 |
22168 | 500 | 16.3 | 2500 | 2.2 | 2000 | 11.9 |
20458 | 900 | 11.4 | 4500 | - | 10260 | 11.4 |
19310 | 1300 | 13.5 | 6500 | 1.1 | 9100 | 11.4 |
19311 | 1300 | 13.5 | 6500 | 1.1 | 9230 | 11.4 |
19312 | 1300 | 13.5 | 6500 | 1.1 | 9360 | 11.4 |
19313 | 1300 | 13.5 | 6500 | 1.1 | 9490 | 11.4 |
19314 | 1300 | 13.5 | 6500 | 1.1 | 9620 | 11.4 |
19315 | 1300 | 13.5 | 6500 | 1.1 | 9750 | 11.4 |
19316 | 1300 | 13.5 | 6500 | 1.1 | 9880 | 11.4 |
19317 | 1300 | 13.5 | 6500 | 1.1 | 10010 | 11.4 |
19976 | 1050 | 10.9 | 5250 | - | 10185 | 10.9 |
19436 | 1250 | 13.0 | 6250 | 1.1 | 9875 | 10.8 |
19437 | 1250 | 13.0 | 6250 | 1.1 | 10000 | 10.8 |
19438 | 1250 | 13.0 | 6250 | 1.1 | 10125 | 10.8 |
21034 | 750 | 10.6 | 3750 | - | 10275 | 10.6 |
20128 | 1000 | 10.4 | 5000 | - | 10200 | 10.4 |
19558 | 1200 | 12.5 | 6000 | 1.2 | 9480 | 10.1 |
19559 | 1200 | 12.5 | 6000 | 1.2 | 9600 | 10.1 |
22200 | 500 | 15.2 | 2500 | 2.8 | 3600 | 9.6 |
19318 | 1300 | 13.5 | 6500 | 2.0 | 10140 | 9.5 |
21421 | 650 | 17.2 | 3250 | 3.8 | 5785 | 9.5 |
21133 | 700 | 18.2 | 3500 | 4.4 | 1820 | 9.4 |
22299 | 500 | 14.9 | 2500 | 2.8 | 8550 | 9.3 |
21905 | 550 | 16.8 | 2750 | 3.8 | 3630 | 9.1 |
19319 | 1300 | 17.5 | 6500 | 4.5 | 10270 | 8.4 |
19439 | 1250 | 15.0 | 6250 | 4.7 | 10250 | 5.6 |
22247 | 500 | 13.2 | 2500 | 5.0 | 5950 | 3.2 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
19967 | 1050 | 29.3 | 5250 | 1.3 | 9240 | 26.7 |
19566 | 1200 | 34.9 | 6000 | 4.9 | 10440 | 25.1 |
19567 | 1200 | 34.9 | 6000 | 4.9 | 10560 | 25.1 |
19568 | 1200 | 34.9 | 6000 | 4.9 | 10680 | 25.1 |
20628 | 850 | 27.6 | 4250 | 1.6 | 9435 | 24.3 |
20098 | 1000 | 28.2 | 5000 | 2.4 | 7200 | 23.4 |
19555 | 1200 | 24.3 | 6000 | 1.2 | 9120 | 22.0 |
20920 | 750 | 24.5 | 3750 | 1.3 | 1725 | 21.8 |
20424 | 900 | 25.4 | 4500 | 2.7 | 7200 | 20.1 |
21131 | 700 | 22.9 | 3500 | 1.4 | 1680 | 20.0 |
20119 | 1000 | 22.7 | 5000 | 1.4 | 9300 | 19.9 |
20101 | 1000 | 28.2 | 5000 | 4.2 | 7500 | 19.8 |
19565 | 1200 | 28.2 | 6000 | 4.9 | 10320 | 18.3 |
19823 | 1100 | 19.9 | 5500 | 1.3 | 9240 | 17.4 |
20791 | 800 | 22.6 | 4000 | 3.0 | 7200 | 16.6 |
21498 | 650 | 21.1 | 3250 | 2.3 | 10790 | 16.5 |
21244 | 700 | 19.6 | 3500 | 2.0 | 9590 | 15.6 |
20993 | 750 | 21.2 | 3750 | 3.2 | 7200 | 14.8 |
20607 | 850 | 24.0 | 4250 | 4.9 | 7650 | 14.1 |
19686 | 1150 | 15.7 | 5750 | 1.2 | 9200 | 13.3 |
22016 | 550 | 17.9 | 2750 | 2.5 | 9735 | 12.8 |
20820 | 800 | 16.2 | 4000 | 1.8 | 9520 | 12.7 |
22037 | 550 | 17.9 | 2750 | 2.7 | 10890 | 12.4 |
19430 | 1250 | 13.7 | 6250 | 1.1 | 9125 | 11.5 |
19431 | 1250 | 13.0 | 6250 | 1.1 | 9250 | 10.8 |
19432 | 1250 | 13.0 | 6250 | 1.1 | 9375 | 10.8 |
19433 | 1250 | 13.0 | 6250 | 1.1 | 9500 | 10.8 |
19434 | 1250 | 13.0 | 6250 | 1.1 | 9625 | 10.8 |
19435 | 1250 | 13.0 | 6250 | 1.1 | 9750 | 10.8 |
21695 | 600 | 18.4 | 3000 | 4.0 | 7200 | 10.4 |
19556 | 1200 | 12.5 | 6000 | 1.2 | 9240 | 10.1 |
19557 | 1200 | 12.5 | 6000 | 1.2 | 9360 | 10.1 |
19560 | 1200 | 12.5 | 6000 | 1.2 | 9720 | 10.1 |
19561 | 1200 | 12.5 | 6000 | 1.2 | 9840 | 10.1 |
19562 | 1200 | 12.5 | 6000 | 1.2 | 9960 | 10.1 |
19563 | 1200 | 12.5 | 6000 | 1.2 | 10080 | 10.1 |
19687 | 1150 | 12.0 | 5750 | 1.2 | 9315 | 9.5 |
19688 | 1150 | 12.0 | 5750 | 1.2 | 9430 | 9.5 |
19689 | 1150 | 12.0 | 5750 | 1.2 | 9545 | 9.5 |
19690 | 1150 | 12.0 | 5750 | 1.2 | 9660 | 9.5 |
19691 | 1150 | 12.0 | 5750 | 1.2 | 9775 | 9.5 |
19692 | 1150 | 12.0 | 5750 | 1.2 | 9890 | 9.5 |
19693 | 1150 | 12.0 | 5750 | 1.2 | 10005 | 9.5 |
19694 | 1150 | 12.0 | 5750 | 1.2 | 10120 | 9.5 |
20280 | 950 | 12.1 | 4750 | 1.5 | 9405 | 9.2 |
20449 | 900 | 12.3 | 4500 | 1.6 | 9450 | 9.2 |
19824 | 1100 | 11.4 | 5500 | 1.3 | 9350 | 8.9 |
19825 | 1100 | 11.4 | 5500 | 1.3 | 9460 | 8.9 |
19826 | 1100 | 11.4 | 5500 | 1.3 | 9570 | 8.9 |
19827 | 1100 | 11.4 | 5500 | 1.3 | 9680 | 8.9 |
19828 | 1100 | 11.4 | 5500 | 1.3 | 9790 | 8.9 |
19829 | 1100 | 11.4 | 5500 | 1.3 | 9900 | 8.9 |
19830 | 1100 | 11.4 | 5500 | 1.3 | 10010 | 8.9 |
19831 | 1100 | 11.4 | 5500 | 1.3 | 10120 | 8.9 |
19968 | 1050 | 10.9 | 5250 | 1.3 | 9345 | 8.2 |
19969 | 1050 | 10.9 | 5250 | 1.3 | 9450 | 8.2 |
19970 | 1050 | 10.9 | 5250 | 1.3 | 9555 | 8.2 |
19971 | 1050 | 10.9 | 5250 | 1.3 | 9660 | 8.2 |
19972 | 1050 | 10.9 | 5250 | 1.3 | 9765 | 8.2 |
19973 | 1050 | 10.9 | 5250 | 1.3 | 9870 | 8.2 |
19974 | 1050 | 10.9 | 5250 | 1.3 | 9975 | 8.2 |
19975 | 1050 | 10.9 | 5250 | 1.3 | 10080 | 8.2 |
21481 | 650 | 12.2 | 3250 | 2.2 | 9685 | 7.9 |
20120 | 1000 | 10.4 | 5000 | 1.4 | 9400 | 7.6 |
20121 | 1000 | 10.4 | 5000 | 1.4 | 9500 | 7.6 |
20122 | 1000 | 10.4 | 5000 | 1.4 | 9600 | 7.6 |
20123 | 1000 | 10.4 | 5000 | 1.4 | 9700 | 7.6 |
20124 | 1000 | 10.4 | 5000 | 1.4 | 9800 | 7.6 |
20125 | 1000 | 10.4 | 5000 | 1.4 | 9900 | 7.6 |
20126 | 1000 | 10.4 | 5000 | 1.4 | 10000 | 7.6 |
20127 | 1000 | 10.4 | 5000 | 1.4 | 10100 | 7.6 |
21672 | 600 | 15.9 | 3000 | 4.2 | 5820 | 7.5 |
21737 | 600 | 12.1 | 3000 | 2.3 | 9720 | 7.5 |
21025 | 750 | 10.2 | 3750 | 1.9 | 9600 | 6.5 |
21945 | 550 | 15.2 | 2750 | 4.5 | 5830 | 6.1 |
22272 | 500 | 15.4 | 2500 | 4.8 | 7200 | 5.8 |
22324 | 500 | 11.4 | 2500 | 2.8 | 9800 | 5.8 |
21946 | 550 | 14.6 | 2750 | 4.5 | 5885 | 5.5 |
22246 | 500 | 13.2 | 2500 | 5.0 | 5900 | 3.2 |
Overall score = score_ratio - 2 * repetitive DNA content