Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign111 - back to list
Summary
./analyse_probe_search_results : Fri Feb 17 09:58:35 2006
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign111 assembly : NCBIM34 bias : 3prime chromosome : 14 id : 107 strand : 1 ------------- Design window length: 3001bp All jobs for probe design are successful - total: 46 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 907 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 907/907 Putative probes that are unique : 234/907 Putative probes exceeding selection criteria : 576/907 (both unique and not unique) Putative probes with successfully-picked primers: 499/576 Identified 99 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
101391 | 700 | 3500 | - | 1295 |
101420 | 650 | 3250 | - | 0 |
101421 | 650 | 3250 | - | 32 |
101461 | 650 | 3250 | - | 1312 |
101462 | 650 | 3250 | - | 1344 |
101494 | 600 | 3000 | - | 0 |
101495 | 600 | 3000 | - | 30 |
101496 | 600 | 3000 | - | 60 |
101537 | 600 | 3000 | - | 1290 |
101538 | 600 | 3000 | - | 1320 |
101539 | 600 | 3000 | - | 1350 |
101540 | 600 | 3000 | - | 1380 |
101575 | 550 | 2750 | - | 0 |
101576 | 550 | 2750 | - | 27 |
101577 | 550 | 2750 | - | 54 |
101578 | 550 | 2750 | - | 81 |
101579 | 550 | 2750 | - | 108 |
101580 | 550 | 2750 | - | 135 |
101623 | 550 | 2750 | - | 1296 |
101624 | 550 | 2750 | - | 1323 |
101625 | 550 | 2750 | - | 1350 |
101626 | 550 | 2750 | - | 1377 |
101627 | 550 | 2750 | - | 1404 |
101628 | 550 | 2750 | - | 1431 |
101666 | 500 | 2500 | - | 0 |
101667 | 500 | 2500 | - | 25 |
101668 | 500 | 2500 | - | 50 |
101669 | 500 | 2500 | - | 75 |
101670 | 500 | 2500 | - | 100 |
101671 | 500 | 2500 | - | 125 |
101672 | 500 | 2500 | - | 150 |
101673 | 500 | 2500 | - | 175 |
101718 | 500 | 2500 | - | 1300 |
101719 | 500 | 2500 | - | 1325 |
101720 | 500 | 2500 | - | 1350 |
101721 | 500 | 2500 | - | 1375 |
101722 | 500 | 2500 | - | 1400 |
101723 | 500 | 2500 | - | 1425 |
101724 | 500 | 2500 | - | 1450 |
101725 | 500 | 2500 | - | 1475 |
101726 | 500 | 2500 | - | 1500 |
101629 | 550 | 2750 | 0.5 | 1458 |
101541 | 600 | 3000 | 0.8 | 1410 |
101270 | 800 | 4000 | 1.0 | 1320 |
101328 | 750 | 3750 | 1.1 | 1295 |
101329 | 750 | 3750 | 1.1 | 1332 |
101330 | 750 | 3750 | 1.1 | 1369 |
101392 | 700 | 3500 | 1.1 | 1330 |
101393 | 700 | 3500 | 1.1 | 1365 |
101394 | 700 | 3500 | 1.1 | 1400 |
101463 | 650 | 3250 | 1.2 | 1376 |
101464 | 650 | 3250 | 1.2 | 1408 |
101465 | 650 | 3250 | 1.2 | 1440 |
101466 | 650 | 3250 | 1.2 | 1472 |
100880 | 1300 | 6500 | 1.3 | 1300 |
101542 | 600 | 3000 | 1.3 | 1440 |
101543 | 600 | 3000 | 1.3 | 1470 |
101544 | 600 | 3000 | 1.3 | 1500 |
100908 | 1250 | 6250 | 1.4 | 1302 |
100909 | 1250 | 6250 | 1.4 | 1364 |
100938 | 1200 | 6000 | 1.4 | 1320 |
100939 | 1200 | 6000 | 1.4 | 1380 |
101630 | 550 | 2750 | 1.5 | 1485 |
101631 | 550 | 2750 | 1.5 | 1512 |
101632 | 550 | 2750 | 1.5 | 1539 |
101633 | 550 | 2750 | 1.5 | 1566 |
100970 | 1150 | 5750 | 1.5 | 1311 |
100971 | 1150 | 5750 | 1.5 | 1368 |
100972 | 1150 | 5750 | 1.5 | 1425 |
100973 | 1150 | 5750 | 1.5 | 1482 |
101545 | 600 | 3000 | 1.5 | 1530 |
101004 | 1100 | 5500 | 1.5 | 1320 |
101005 | 1100 | 5500 | 1.5 | 1375 |
101006 | 1100 | 5500 | 1.5 | 1430 |
101007 | 1100 | 5500 | 1.5 | 1485 |
101727 | 500 | 2500 | 1.6 | 1525 |
101728 | 500 | 2500 | 1.6 | 1550 |
101729 | 500 | 2500 | 1.6 | 1575 |
101730 | 500 | 2500 | 1.6 | 1600 |
101731 | 500 | 2500 | 1.6 | 1625 |
101040 | 1050 | 5250 | 1.6 | 1300 |
101041 | 1050 | 5250 | 1.6 | 1352 |
101042 | 1050 | 5250 | 1.6 | 1404 |
101043 | 1050 | 5250 | 1.6 | 1456 |
101044 | 1050 | 5250 | 1.6 | 1508 |
101045 | 1050 | 5250 | 1.6 | 1560 |
101650 | 550 | 2750 | 1.6 | 2025 |
101651 | 550 | 2750 | 1.6 | 2052 |
101652 | 550 | 2750 | 1.6 | 2079 |
101079 | 1000 | 5000 | 1.7 | 1300 |
101080 | 1000 | 5000 | 1.7 | 1350 |
101081 | 1000 | 5000 | 1.7 | 1400 |
101082 | 1000 | 5000 | 1.7 | 1450 |
101083 | 1000 | 5000 | 1.7 | 1500 |
101084 | 1000 | 5000 | 1.7 | 1550 |
101085 | 1000 | 5000 | 1.7 | 1600 |
101122 | 950 | 4750 | 1.8 | 1316 |
101123 | 950 | 4750 | 1.8 | 1363 |
101124 | 950 | 4750 | 1.8 | 1410 |
101125 | 950 | 4750 | 1.8 | 1457 |
101126 | 950 | 4750 | 1.8 | 1504 |
101127 | 950 | 4750 | 1.8 | 1551 |
101128 | 950 | 4750 | 1.8 | 1598 |
101129 | 950 | 4750 | 1.8 | 1645 |
101747 | 500 | 2500 | 1.8 | 2025 |
101748 | 500 | 2500 | 1.8 | 2050 |
101749 | 500 | 2500 | 1.8 | 2075 |
101750 | 500 | 2500 | 1.8 | 2100 |
101751 | 500 | 2500 | 1.8 | 2125 |
101167 | 900 | 4500 | 1.9 | 1305 |
101168 | 900 | 4500 | 1.9 | 1350 |
101169 | 900 | 4500 | 1.9 | 1395 |
101170 | 900 | 4500 | 1.9 | 1440 |
101171 | 900 | 4500 | 1.9 | 1485 |
101172 | 900 | 4500 | 1.9 | 1530 |
101173 | 900 | 4500 | 1.9 | 1575 |
101174 | 900 | 4500 | 1.9 | 1620 |
101175 | 900 | 4500 | 1.9 | 1665 |
101176 | 900 | 4500 | 1.9 | 1710 |
101216 | 850 | 4250 | 2.0 | 1302 |
101217 | 850 | 4250 | 2.0 | 1344 |
101218 | 850 | 4250 | 2.0 | 1386 |
101219 | 850 | 4250 | 2.0 | 1428 |
101220 | 850 | 4250 | 2.0 | 1470 |
101221 | 850 | 4250 | 2.0 | 1512 |
101222 | 850 | 4250 | 2.0 | 1554 |
101223 | 850 | 4250 | 2.0 | 1596 |
101224 | 850 | 4250 | 2.0 | 1638 |
101225 | 850 | 4250 | 2.0 | 1680 |
101226 | 850 | 4250 | 2.0 | 1722 |
101227 | 850 | 4250 | 2.0 | 1764 |
101395 | 700 | 3500 | 2.0 | 1435 |
101561 | 600 | 3000 | 2.0 | 2010 |
101271 | 800 | 4000 | 2.1 | 1360 |
101272 | 800 | 4000 | 2.1 | 1400 |
101273 | 800 | 4000 | 2.1 | 1440 |
101274 | 800 | 4000 | 2.1 | 1480 |
101275 | 800 | 4000 | 2.1 | 1520 |
101276 | 800 | 4000 | 2.1 | 1560 |
101277 | 800 | 4000 | 2.1 | 1600 |
101278 | 800 | 4000 | 2.1 | 1640 |
101279 | 800 | 4000 | 2.1 | 1680 |
101280 | 800 | 4000 | 2.1 | 1720 |
101281 | 800 | 4000 | 2.1 | 1760 |
101282 | 800 | 4000 | 2.1 | 1800 |
101331 | 750 | 3750 | 2.3 | 1406 |
101332 | 750 | 3750 | 2.3 | 1443 |
101333 | 750 | 3750 | 2.3 | 1480 |
101334 | 750 | 3750 | 2.3 | 1517 |
101335 | 750 | 3750 | 2.3 | 1554 |
101336 | 750 | 3750 | 2.3 | 1591 |
101337 | 750 | 3750 | 2.3 | 1628 |
101338 | 750 | 3750 | 2.3 | 1665 |
101339 | 750 | 3750 | 2.3 | 1702 |
101340 | 750 | 3750 | 2.3 | 1739 |
101341 | 750 | 3750 | 2.3 | 1776 |
101342 | 750 | 3750 | 2.3 | 1813 |
101343 | 750 | 3750 | 2.3 | 1850 |
101396 | 700 | 3500 | 2.4 | 1470 |
101397 | 700 | 3500 | 2.4 | 1505 |
101398 | 700 | 3500 | 2.4 | 1540 |
101399 | 700 | 3500 | 2.4 | 1575 |
101400 | 700 | 3500 | 2.4 | 1610 |
101401 | 700 | 3500 | 2.4 | 1645 |
101402 | 700 | 3500 | 2.4 | 1680 |
101403 | 700 | 3500 | 2.4 | 1715 |
101404 | 700 | 3500 | 2.4 | 1750 |
101405 | 700 | 3500 | 2.4 | 1785 |
101406 | 700 | 3500 | 2.4 | 1820 |
101407 | 700 | 3500 | 2.4 | 1855 |
101408 | 700 | 3500 | 2.4 | 1890 |
101409 | 700 | 3500 | 2.4 | 1925 |
101467 | 650 | 3250 | 2.6 | 1504 |
101468 | 650 | 3250 | 2.6 | 1536 |
101469 | 650 | 3250 | 2.6 | 1568 |
101470 | 650 | 3250 | 2.6 | 1600 |
101471 | 650 | 3250 | 2.6 | 1632 |
101472 | 650 | 3250 | 2.6 | 1664 |
101473 | 650 | 3250 | 2.6 | 1696 |
101474 | 650 | 3250 | 2.6 | 1728 |
101475 | 650 | 3250 | 2.6 | 1760 |
101476 | 650 | 3250 | 2.6 | 1792 |
101477 | 650 | 3250 | 2.6 | 1824 |
101478 | 650 | 3250 | 2.6 | 1856 |
101479 | 650 | 3250 | 2.6 | 1888 |
101480 | 650 | 3250 | 2.6 | 1920 |
101481 | 650 | 3250 | 2.6 | 1952 |
101482 | 650 | 3250 | 2.6 | 1984 |
101546 | 600 | 3000 | 2.8 | 1560 |
101547 | 600 | 3000 | 2.8 | 1590 |
101548 | 600 | 3000 | 2.8 | 1620 |
101549 | 600 | 3000 | 2.8 | 1650 |
101550 | 600 | 3000 | 2.8 | 1680 |
101551 | 600 | 3000 | 2.8 | 1710 |
101552 | 600 | 3000 | 2.8 | 1740 |
101553 | 600 | 3000 | 2.8 | 1770 |
101554 | 600 | 3000 | 2.8 | 1800 |
101555 | 600 | 3000 | 2.8 | 1830 |
101556 | 600 | 3000 | 2.8 | 1860 |
101557 | 600 | 3000 | 2.8 | 1890 |
101558 | 600 | 3000 | 2.8 | 1920 |
101559 | 600 | 3000 | 2.8 | 1950 |
101560 | 600 | 3000 | 2.8 | 1980 |
101634 | 550 | 2750 | 3.1 | 1593 |
101635 | 550 | 2750 | 3.1 | 1620 |
101636 | 550 | 2750 | 3.1 | 1647 |
101637 | 550 | 2750 | 3.1 | 1674 |
101638 | 550 | 2750 | 3.1 | 1701 |
101639 | 550 | 2750 | 3.1 | 1728 |
101640 | 550 | 2750 | 3.1 | 1755 |
101641 | 550 | 2750 | 3.1 | 1782 |
101642 | 550 | 2750 | 3.1 | 1809 |
101643 | 550 | 2750 | 3.1 | 1836 |
101644 | 550 | 2750 | 3.1 | 1863 |
101645 | 550 | 2750 | 3.1 | 1890 |
101646 | 550 | 2750 | 3.1 | 1917 |
101647 | 550 | 2750 | 3.1 | 1944 |
101648 | 550 | 2750 | 3.1 | 1971 |
101649 | 550 | 2750 | 3.1 | 1998 |
101732 | 500 | 2500 | 3.4 | 1650 |
101733 | 500 | 2500 | 3.4 | 1675 |
101734 | 500 | 2500 | 3.4 | 1700 |
101735 | 500 | 2500 | 3.4 | 1725 |
101736 | 500 | 2500 | 3.4 | 1750 |
101737 | 500 | 2500 | 3.4 | 1775 |
101738 | 500 | 2500 | 3.4 | 1800 |
101739 | 500 | 2500 | 3.4 | 1825 |
101740 | 500 | 2500 | 3.4 | 1850 |
101741 | 500 | 2500 | 3.4 | 1875 |
101742 | 500 | 2500 | 3.4 | 1900 |
101743 | 500 | 2500 | 3.4 | 1925 |
101744 | 500 | 2500 | 3.4 | 1950 |
101745 | 500 | 2500 | 3.4 | 1975 |
101746 | 500 | 2500 | 3.4 | 2000 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
100881 | 1300 | 43.3 | 6500 | 1.3 | 1365 | 40.7 |
100882 | 1300 | 43.3 | 6500 | 1.3 | 1430 | 40.7 |
100883 | 1300 | 43.3 | 6500 | 1.3 | 1495 | 40.7 |
100884 | 1300 | 42.5 | 6500 | 1.3 | 1560 | 39.9 |
100910 | 1250 | 41.7 | 6250 | 1.4 | 1426 | 38.9 |
100911 | 1250 | 41.7 | 6250 | 1.4 | 1488 | 38.9 |
100912 | 1250 | 41.7 | 6250 | 1.4 | 1550 | 38.9 |
100913 | 1250 | 40.8 | 6250 | 1.4 | 1612 | 38.1 |
100875 | 1300 | 39.6 | 6500 | 1.3 | 975 | 37.0 |
100876 | 1300 | 39.6 | 6500 | 1.3 | 1040 | 37.0 |
100877 | 1300 | 39.6 | 6500 | 1.3 | 1105 | 37.0 |
100878 | 1300 | 39.6 | 6500 | 1.3 | 1170 | 37.0 |
100879 | 1300 | 39.6 | 6500 | 1.3 | 1235 | 37.0 |
100885 | 1300 | 39.4 | 6500 | 1.3 | 1625 | 36.8 |
100902 | 1250 | 38.1 | 6250 | 1.4 | 930 | 35.2 |
100874 | 1300 | 39.6 | 6500 | 2.9 | 910 | 33.8 |
100932 | 1200 | 36.6 | 6000 | 1.4 | 960 | 33.8 |
100964 | 1150 | 35.1 | 5750 | 0.7 | 969 | 33.7 |
100886 | 1300 | 35.3 | 6500 | 1.3 | 1690 | 32.7 |
100965 | 1150 | 35.1 | 5750 | 1.5 | 1026 | 32.1 |
100997 | 1100 | 33.5 | 5500 | 0.7 | 935 | 32.1 |
100998 | 1100 | 33.5 | 5500 | 0.7 | 990 | 32.1 |
101033 | 1050 | 32.0 | 5250 | - | 936 | 32.0 |
101034 | 1050 | 32.0 | 5250 | 0.8 | 988 | 30.5 |
101035 | 1050 | 32.0 | 5250 | 0.8 | 1040 | 30.5 |
101072 | 1000 | 30.5 | 5000 | - | 950 | 30.5 |
101073 | 1000 | 30.5 | 5000 | - | 1000 | 30.5 |
100999 | 1100 | 33.5 | 5500 | 1.5 | 1045 | 30.4 |
101000 | 1100 | 33.5 | 5500 | 1.5 | 1100 | 30.4 |
100963 | 1150 | 35.1 | 5750 | 2.3 | 912 | 30.4 |
100931 | 1200 | 36.6 | 6000 | 3.2 | 900 | 30.1 |
100946 | 1200 | 32.6 | 6000 | 1.4 | 1800 | 29.8 |
101114 | 950 | 29.0 | 4750 | - | 940 | 29.0 |
101115 | 950 | 29.0 | 4750 | - | 987 | 29.0 |
101116 | 950 | 29.0 | 4750 | - | 1034 | 29.0 |
101074 | 1000 | 30.5 | 5000 | 0.8 | 1050 | 28.9 |
101075 | 1000 | 30.5 | 5000 | 0.8 | 1100 | 28.9 |
101036 | 1050 | 32.0 | 5250 | 1.6 | 1092 | 28.8 |
101037 | 1050 | 32.0 | 5250 | 1.6 | 1144 | 28.8 |
101159 | 900 | 27.4 | 4500 | - | 945 | 27.4 |
101160 | 900 | 27.4 | 4500 | - | 990 | 27.4 |
101161 | 900 | 27.4 | 4500 | - | 1035 | 27.4 |
101162 | 900 | 27.4 | 4500 | - | 1080 | 27.4 |
101117 | 950 | 29.0 | 4750 | 0.8 | 1081 | 27.3 |
101118 | 950 | 29.0 | 4750 | 0.8 | 1128 | 27.3 |
101119 | 950 | 29.0 | 4750 | 0.8 | 1175 | 27.3 |
101076 | 1000 | 30.5 | 5000 | 1.7 | 1150 | 27.1 |
101077 | 1000 | 30.5 | 5000 | 1.7 | 1200 | 27.1 |
101208 | 850 | 25.9 | 4250 | - | 966 | 25.9 |
101209 | 850 | 25.9 | 4250 | - | 1008 | 25.9 |
101210 | 850 | 25.9 | 4250 | - | 1050 | 25.9 |
101211 | 850 | 25.9 | 4250 | - | 1092 | 25.9 |
101212 | 850 | 25.9 | 4250 | - | 1134 | 25.9 |
101237 | 800 | 26.0 | 4000 | 0.1 | 0 | 25.7 |
101163 | 900 | 27.4 | 4500 | 0.9 | 1125 | 25.7 |
101164 | 900 | 27.4 | 4500 | 0.9 | 1170 | 25.7 |
101165 | 900 | 27.4 | 4500 | 0.9 | 1215 | 25.7 |
101233 | 850 | 27.8 | 4250 | 1.1 | 2016 | 25.7 |
101120 | 950 | 29.0 | 4750 | 1.8 | 1222 | 25.4 |
101183 | 900 | 27.3 | 4500 | 1.0 | 2025 | 25.3 |
101293 | 750 | 24.5 | 3750 | - | 0 | 24.5 |
101294 | 750 | 24.5 | 3750 | - | 37 | 24.5 |
101288 | 800 | 26.7 | 4000 | 1.1 | 2040 | 24.4 |
101261 | 800 | 24.4 | 4000 | - | 960 | 24.4 |
101262 | 800 | 24.4 | 4000 | - | 1000 | 24.4 |
101263 | 800 | 24.4 | 4000 | - | 1040 | 24.4 |
101264 | 800 | 24.4 | 4000 | - | 1080 | 24.4 |
101265 | 800 | 24.4 | 4000 | - | 1120 | 24.4 |
101266 | 800 | 24.4 | 4000 | - | 1160 | 24.4 |
101267 | 800 | 24.4 | 4000 | - | 1200 | 24.4 |
101071 | 1000 | 30.5 | 5000 | 3.1 | 900 | 24.3 |
101207 | 850 | 25.9 | 4250 | 0.8 | 924 | 24.3 |
101213 | 850 | 25.9 | 4250 | 0.9 | 1176 | 24.0 |
101214 | 850 | 25.9 | 4250 | 0.9 | 1218 | 24.0 |
101215 | 850 | 25.9 | 4250 | 0.9 | 1260 | 24.0 |
101137 | 950 | 25.8 | 4750 | 0.9 | 2021 | 23.9 |
101289 | 800 | 26.1 | 4000 | 1.1 | 2080 | 23.9 |
101166 | 900 | 27.4 | 4500 | 1.9 | 1260 | 23.7 |
101234 | 850 | 25.8 | 4250 | 1.1 | 2058 | 23.6 |
101269 | 800 | 25.2 | 4000 | 1.0 | 1280 | 23.2 |
101236 | 850 | 23.1 | 4250 | - | 2142 | 23.1 |
101354 | 700 | 22.9 | 3500 | - | 0 | 22.9 |
101355 | 700 | 22.9 | 3500 | - | 35 | 22.9 |
101356 | 700 | 22.9 | 3500 | - | 70 | 22.9 |
101416 | 700 | 22.9 | 3500 | - | 2170 | 22.9 |
101319 | 750 | 22.9 | 3750 | - | 962 | 22.9 |
101320 | 750 | 22.9 | 3750 | - | 999 | 22.9 |
101321 | 750 | 22.9 | 3750 | - | 1036 | 22.9 |
101322 | 750 | 22.9 | 3750 | - | 1073 | 22.9 |
101323 | 750 | 22.9 | 3750 | - | 1110 | 22.9 |
101324 | 750 | 22.9 | 3750 | - | 1147 | 22.9 |
101325 | 750 | 22.9 | 3750 | - | 1184 | 22.9 |
101326 | 750 | 22.9 | 3750 | - | 1221 | 22.9 |
101351 | 750 | 22.7 | 3750 | - | 2146 | 22.7 |
101348 | 750 | 25.0 | 3750 | 1.2 | 2035 | 22.6 |
101349 | 750 | 25.0 | 3750 | 1.2 | 2072 | 22.6 |
101415 | 700 | 23.3 | 3500 | 0.4 | 2135 | 22.5 |
101184 | 900 | 24.5 | 4500 | 1.0 | 2070 | 22.5 |
101268 | 800 | 24.4 | 4000 | 1.0 | 1240 | 22.4 |
101352 | 750 | 22.3 | 3750 | - | 2183 | 22.3 |
101350 | 750 | 24.5 | 3750 | 1.2 | 2109 | 22.1 |
101327 | 750 | 22.9 | 3750 | 0.4 | 1258 | 22.1 |
101290 | 800 | 24.2 | 4000 | 1.1 | 2120 | 22.0 |
101291 | 800 | 21.7 | 4000 | - | 2160 | 21.7 |
101292 | 800 | 21.7 | 4000 | - | 2200 | 21.7 |
101487 | 650 | 21.7 | 3250 | - | 2144 | 21.7 |
101488 | 650 | 21.7 | 3250 | - | 2176 | 21.7 |
101260 | 800 | 24.4 | 4000 | 1.4 | 920 | 21.6 |
101381 | 700 | 21.3 | 3500 | - | 945 | 21.3 |
101382 | 700 | 21.3 | 3500 | - | 980 | 21.3 |
101383 | 700 | 21.3 | 3500 | - | 1015 | 21.3 |
101384 | 700 | 21.3 | 3500 | - | 1050 | 21.3 |
101385 | 700 | 21.3 | 3500 | - | 1085 | 21.3 |
101386 | 700 | 21.3 | 3500 | - | 1120 | 21.3 |
101387 | 700 | 21.3 | 3500 | - | 1155 | 21.3 |
101388 | 700 | 21.3 | 3500 | - | 1190 | 21.3 |
101389 | 700 | 21.3 | 3500 | - | 1225 | 21.3 |
101390 | 700 | 21.3 | 3500 | - | 1260 | 21.3 |
101318 | 750 | 22.9 | 3750 | 0.8 | 925 | 21.3 |
101422 | 650 | 21.2 | 3250 | - | 64 | 21.2 |
101423 | 650 | 21.2 | 3250 | - | 96 | 21.2 |
101424 | 650 | 21.2 | 3250 | - | 128 | 21.2 |
101489 | 650 | 21.2 | 3250 | - | 2208 | 21.2 |
101417 | 700 | 21.2 | 3500 | - | 2205 | 21.2 |
101357 | 700 | 22.7 | 3500 | 0.9 | 105 | 21.0 |
101235 | 850 | 23.1 | 4250 | 1.1 | 2100 | 21.0 |
101113 | 950 | 29.0 | 4750 | 4.0 | 893 | 21.0 |
101412 | 700 | 23.3 | 3500 | 1.3 | 2030 | 20.8 |
101413 | 700 | 23.3 | 3500 | 1.3 | 2065 | 20.8 |
101414 | 700 | 23.3 | 3500 | 1.3 | 2100 | 20.8 |
101460 | 650 | 20.4 | 3250 | - | 1280 | 20.4 |
101353 | 750 | 20.4 | 3750 | - | 2220 | 20.4 |
100996 | 1100 | 29.4 | 5500 | 4.6 | 880 | 20.1 |
101566 | 600 | 20.0 | 3000 | - | 2160 | 20.0 |
101567 | 600 | 20.0 | 3000 | - | 2190 | 20.0 |
101568 | 600 | 20.0 | 3000 | - | 2220 | 20.0 |
101569 | 600 | 20.0 | 3000 | - | 2250 | 20.0 |
101450 | 650 | 19.8 | 3250 | - | 960 | 19.8 |
101451 | 650 | 19.8 | 3250 | - | 992 | 19.8 |
101452 | 650 | 19.8 | 3250 | - | 1024 | 19.8 |
101453 | 650 | 19.8 | 3250 | - | 1056 | 19.8 |
101454 | 650 | 19.8 | 3250 | - | 1088 | 19.8 |
101455 | 650 | 19.8 | 3250 | - | 1120 | 19.8 |
101456 | 650 | 19.8 | 3250 | - | 1152 | 19.8 |
101457 | 650 | 19.8 | 3250 | - | 1184 | 19.8 |
101458 | 650 | 19.8 | 3250 | - | 1216 | 19.8 |
101459 | 650 | 19.8 | 3250 | - | 1248 | 19.8 |
101490 | 650 | 19.7 | 3250 | - | 2240 | 19.7 |
101491 | 650 | 19.7 | 3250 | - | 2272 | 19.7 |
101497 | 600 | 19.6 | 3000 | - | 90 | 19.6 |
101498 | 600 | 19.6 | 3000 | - | 120 | 19.6 |
101499 | 600 | 19.6 | 3000 | - | 150 | 19.6 |
101500 | 600 | 19.6 | 3000 | - | 180 | 19.6 |
101570 | 600 | 19.6 | 3000 | - | 2280 | 19.6 |
101418 | 700 | 19.3 | 3500 | - | 2240 | 19.3 |
101032 | 1050 | 28.2 | 5250 | 4.5 | 884 | 19.3 |
101419 | 700 | 19.0 | 3500 | - | 2275 | 19.0 |
101449 | 650 | 19.8 | 3250 | 0.5 | 928 | 18.9 |
101655 | 550 | 18.3 | 2750 | - | 2160 | 18.3 |
101656 | 550 | 18.3 | 2750 | - | 2187 | 18.3 |
101657 | 550 | 18.3 | 2750 | - | 2214 | 18.3 |
101658 | 550 | 18.3 | 2750 | - | 2241 | 18.3 |
101659 | 550 | 18.3 | 2750 | - | 2268 | 18.3 |
101660 | 550 | 18.3 | 2750 | - | 2295 | 18.3 |
101526 | 600 | 18.3 | 3000 | - | 960 | 18.3 |
101527 | 600 | 18.3 | 3000 | - | 990 | 18.3 |
101528 | 600 | 18.3 | 3000 | - | 1020 | 18.3 |
101529 | 600 | 18.3 | 3000 | - | 1050 | 18.3 |
101530 | 600 | 18.3 | 3000 | - | 1080 | 18.3 |
101531 | 600 | 18.3 | 3000 | - | 1110 | 18.3 |
101532 | 600 | 18.3 | 3000 | - | 1140 | 18.3 |
101533 | 600 | 18.3 | 3000 | - | 1170 | 18.3 |
101534 | 600 | 18.3 | 3000 | - | 1200 | 18.3 |
101535 | 600 | 18.3 | 3000 | - | 1230 | 18.3 |
101536 | 600 | 18.3 | 3000 | - | 1260 | 18.3 |
101571 | 600 | 18.2 | 3000 | - | 2310 | 18.2 |
101581 | 550 | 18.0 | 2750 | - | 162 | 18.0 |
101582 | 550 | 18.0 | 2750 | - | 189 | 18.0 |
101583 | 550 | 18.0 | 2750 | - | 216 | 18.0 |
101584 | 550 | 18.0 | 2750 | - | 243 | 18.0 |
101661 | 550 | 18.0 | 2750 | - | 2322 | 18.0 |
101525 | 600 | 18.3 | 3000 | 0.2 | 930 | 18.0 |
101425 | 650 | 21.1 | 3250 | 1.7 | 160 | 17.7 |
101295 | 750 | 24.4 | 3750 | 3.3 | 74 | 17.7 |
101492 | 650 | 17.7 | 3250 | - | 2304 | 17.7 |
101493 | 650 | 17.7 | 3250 | - | 2336 | 17.7 |
101610 | 550 | 16.8 | 2750 | - | 945 | 16.8 |
101611 | 550 | 16.8 | 2750 | - | 972 | 16.8 |
101612 | 550 | 16.8 | 2750 | - | 999 | 16.8 |
101613 | 550 | 16.8 | 2750 | - | 1026 | 16.8 |
101614 | 550 | 16.8 | 2750 | - | 1053 | 16.8 |
101615 | 550 | 16.8 | 2750 | - | 1080 | 16.8 |
101616 | 550 | 16.8 | 2750 | - | 1107 | 16.8 |
101617 | 550 | 16.8 | 2750 | - | 1134 | 16.8 |
101618 | 550 | 16.8 | 2750 | - | 1161 | 16.8 |
101619 | 550 | 16.8 | 2750 | - | 1188 | 16.8 |
101620 | 550 | 16.8 | 2750 | - | 1215 | 16.8 |
101621 | 550 | 16.8 | 2750 | - | 1242 | 16.8 |
101622 | 550 | 16.8 | 2750 | - | 1269 | 16.8 |
101752 | 500 | 16.7 | 2500 | - | 2150 | 16.7 |
101753 | 500 | 16.7 | 2500 | - | 2175 | 16.7 |
101754 | 500 | 16.7 | 2500 | - | 2200 | 16.7 |
101755 | 500 | 16.7 | 2500 | - | 2225 | 16.7 |
101756 | 500 | 16.7 | 2500 | - | 2250 | 16.7 |
101757 | 500 | 16.7 | 2500 | - | 2275 | 16.7 |
101758 | 500 | 16.7 | 2500 | - | 2300 | 16.7 |
101759 | 500 | 16.7 | 2500 | - | 2325 | 16.7 |
101662 | 550 | 16.7 | 2750 | - | 2349 | 16.7 |
101760 | 500 | 16.7 | 2500 | - | 2350 | 16.7 |
101663 | 550 | 16.7 | 2750 | - | 2376 | 16.7 |
101572 | 600 | 16.6 | 3000 | - | 2340 | 16.6 |
101654 | 550 | 18.3 | 2750 | 0.9 | 2133 | 16.5 |
101674 | 500 | 16.3 | 2500 | - | 200 | 16.3 |
101675 | 500 | 16.3 | 2500 | - | 225 | 16.3 |
101676 | 500 | 16.3 | 2500 | - | 250 | 16.3 |
101677 | 500 | 16.3 | 2500 | - | 275 | 16.3 |
101761 | 500 | 16.3 | 2500 | - | 2375 | 16.3 |
101573 | 600 | 16.3 | 3000 | - | 2370 | 16.3 |
101574 | 600 | 16.3 | 3000 | - | 2400 | 16.3 |
101501 | 600 | 19.5 | 3000 | 1.8 | 210 | 15.8 |
101704 | 500 | 15.2 | 2500 | - | 950 | 15.2 |
101705 | 500 | 15.2 | 2500 | - | 975 | 15.2 |
101706 | 500 | 15.2 | 2500 | - | 1000 | 15.2 |
101707 | 500 | 15.2 | 2500 | - | 1025 | 15.2 |
101708 | 500 | 15.2 | 2500 | - | 1050 | 15.2 |
101709 | 500 | 15.2 | 2500 | - | 1075 | 15.2 |
101710 | 500 | 15.2 | 2500 | - | 1100 | 15.2 |
101711 | 500 | 15.2 | 2500 | - | 1125 | 15.2 |
101712 | 500 | 15.2 | 2500 | - | 1150 | 15.2 |
101713 | 500 | 15.2 | 2500 | - | 1175 | 15.2 |
101714 | 500 | 15.2 | 2500 | - | 1200 | 15.2 |
101715 | 500 | 15.2 | 2500 | - | 1225 | 15.2 |
101716 | 500 | 15.2 | 2500 | - | 1250 | 15.2 |
101717 | 500 | 15.2 | 2500 | - | 1275 | 15.2 |
101762 | 500 | 15.2 | 2500 | - | 2400 | 15.2 |
101763 | 500 | 15.2 | 2500 | - | 2425 | 15.2 |
101664 | 550 | 14.9 | 2750 | - | 2403 | 14.9 |
101665 | 550 | 14.9 | 2750 | - | 2430 | 14.9 |
101764 | 500 | 13.6 | 2500 | - | 2450 | 13.6 |
101765 | 500 | 13.6 | 2500 | - | 2475 | 13.6 |
101766 | 500 | 13.6 | 2500 | - | 2500 | 13.6 |
101703 | 500 | 15.2 | 2500 | 1.2 | 925 | 12.8 |
101609 | 550 | 16.8 | 2750 | 2.4 | 918 | 12.0 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
100940 | 1200 | 40.0 | 6000 | 1.4 | 1440 | 37.2 |
100941 | 1200 | 40.0 | 6000 | 1.4 | 1500 | 37.2 |
100942 | 1200 | 40.0 | 6000 | 1.4 | 1560 | 37.2 |
100943 | 1200 | 40.0 | 6000 | 1.4 | 1620 | 37.2 |
100944 | 1200 | 39.2 | 6000 | 1.4 | 1680 | 36.4 |
100903 | 1250 | 38.1 | 6250 | 1.4 | 992 | 35.4 |
100904 | 1250 | 38.1 | 6250 | 1.4 | 1054 | 35.4 |
100905 | 1250 | 38.1 | 6250 | 1.4 | 1116 | 35.4 |
100906 | 1250 | 38.1 | 6250 | 1.4 | 1178 | 35.4 |
100907 | 1250 | 38.1 | 6250 | 1.4 | 1240 | 35.4 |
100974 | 1150 | 38.3 | 5750 | 1.5 | 1539 | 35.4 |
100975 | 1150 | 38.3 | 5750 | 1.5 | 1596 | 35.4 |
100976 | 1150 | 38.3 | 5750 | 1.5 | 1653 | 35.4 |
100914 | 1250 | 37.9 | 6250 | 1.4 | 1674 | 35.2 |
100977 | 1150 | 37.6 | 5750 | 1.5 | 1710 | 34.6 |
100933 | 1200 | 36.6 | 6000 | 1.4 | 1020 | 33.8 |
100934 | 1200 | 36.6 | 6000 | 1.4 | 1080 | 33.8 |
100935 | 1200 | 36.6 | 6000 | 1.4 | 1140 | 33.8 |
100936 | 1200 | 36.6 | 6000 | 1.4 | 1200 | 33.8 |
100937 | 1200 | 36.6 | 6000 | 1.4 | 1260 | 33.8 |
101008 | 1100 | 36.7 | 5500 | 1.5 | 1540 | 33.6 |
101009 | 1100 | 36.7 | 5500 | 1.5 | 1595 | 33.6 |
101010 | 1100 | 36.7 | 5500 | 1.5 | 1650 | 33.6 |
101011 | 1100 | 36.7 | 5500 | 1.5 | 1705 | 33.6 |
101012 | 1100 | 35.9 | 5500 | 1.5 | 1760 | 32.9 |
100966 | 1150 | 35.1 | 5750 | 1.5 | 1083 | 32.1 |
100967 | 1150 | 35.1 | 5750 | 1.5 | 1140 | 32.1 |
100968 | 1150 | 35.1 | 5750 | 1.5 | 1197 | 32.1 |
100969 | 1150 | 35.1 | 5750 | 1.5 | 1254 | 32.1 |
100978 | 1150 | 34.8 | 5750 | 1.5 | 1767 | 31.9 |
101046 | 1050 | 35.0 | 5250 | 1.6 | 1612 | 31.8 |
101047 | 1050 | 35.0 | 5250 | 1.6 | 1664 | 31.8 |
101048 | 1050 | 35.0 | 5250 | 1.6 | 1716 | 31.8 |
101049 | 1050 | 35.0 | 5250 | 1.6 | 1768 | 31.8 |
100915 | 1250 | 34.0 | 6250 | 1.4 | 1736 | 31.2 |
101050 | 1050 | 34.3 | 5250 | 1.6 | 1820 | 31.1 |
101001 | 1100 | 33.5 | 5500 | 1.5 | 1155 | 30.4 |
101002 | 1100 | 33.5 | 5500 | 1.5 | 1210 | 30.4 |
101003 | 1100 | 33.5 | 5500 | 1.5 | 1265 | 30.4 |
100945 | 1200 | 33.1 | 6000 | 1.4 | 1740 | 30.3 |
101013 | 1100 | 33.3 | 5500 | 1.5 | 1815 | 30.2 |
101086 | 1000 | 33.3 | 5000 | 1.7 | 1650 | 29.9 |
101087 | 1000 | 33.3 | 5000 | 1.7 | 1700 | 29.9 |
101088 | 1000 | 33.3 | 5000 | 1.7 | 1750 | 29.9 |
101089 | 1000 | 33.3 | 5000 | 1.7 | 1800 | 29.9 |
101090 | 1000 | 33.3 | 5000 | 1.7 | 1850 | 29.9 |
101038 | 1050 | 32.0 | 5250 | 1.6 | 1196 | 28.8 |
101039 | 1050 | 32.0 | 5250 | 1.6 | 1248 | 28.8 |
101051 | 1050 | 31.8 | 5250 | 1.6 | 1872 | 28.6 |
100979 | 1150 | 31.2 | 5750 | 1.5 | 1824 | 28.3 |
101130 | 950 | 31.7 | 4750 | 1.8 | 1692 | 28.1 |
101131 | 950 | 31.7 | 4750 | 1.8 | 1739 | 28.1 |
101132 | 950 | 31.7 | 4750 | 1.8 | 1786 | 28.1 |
101133 | 950 | 31.7 | 4750 | 1.8 | 1833 | 28.1 |
101134 | 950 | 31.7 | 4750 | 1.8 | 1880 | 28.1 |
101135 | 950 | 31.0 | 4750 | 1.8 | 1927 | 27.5 |
101078 | 1000 | 30.5 | 5000 | 1.7 | 1250 | 27.1 |
101091 | 1000 | 30.3 | 5000 | 1.7 | 1900 | 26.9 |
101014 | 1100 | 29.9 | 5500 | 1.5 | 1870 | 26.8 |
101177 | 900 | 30.0 | 4500 | 1.9 | 1755 | 26.2 |
101178 | 900 | 30.0 | 4500 | 1.9 | 1800 | 26.2 |
101179 | 900 | 30.0 | 4500 | 1.9 | 1845 | 26.2 |
101180 | 900 | 30.0 | 4500 | 1.9 | 1890 | 26.2 |
101181 | 900 | 30.0 | 4500 | 1.9 | 1935 | 26.2 |
101182 | 900 | 29.4 | 4500 | 1.9 | 1980 | 25.6 |
101121 | 950 | 29.0 | 4750 | 1.8 | 1269 | 25.4 |
101052 | 1050 | 28.5 | 5250 | 1.6 | 1924 | 25.3 |
101136 | 950 | 28.8 | 4750 | 1.8 | 1974 | 25.2 |
101228 | 850 | 28.3 | 4250 | 2.0 | 1806 | 24.3 |
101229 | 850 | 28.3 | 4250 | 2.0 | 1848 | 24.3 |
101230 | 850 | 28.3 | 4250 | 2.0 | 1890 | 24.3 |
101231 | 850 | 28.3 | 4250 | 2.0 | 1932 | 24.3 |
101232 | 850 | 28.3 | 4250 | 2.0 | 1974 | 24.3 |
101092 | 1000 | 27.2 | 5000 | 1.7 | 1950 | 23.8 |
101093 | 1000 | 27.2 | 5000 | 1.7 | 2000 | 23.8 |
101283 | 800 | 26.7 | 4000 | 2.1 | 1840 | 22.4 |
101284 | 800 | 26.7 | 4000 | 2.1 | 1880 | 22.4 |
101285 | 800 | 26.7 | 4000 | 2.1 | 1920 | 22.4 |
101286 | 800 | 26.7 | 4000 | 2.1 | 1960 | 22.4 |
101287 | 800 | 26.7 | 4000 | 2.1 | 2000 | 22.4 |
101158 | 900 | 27.4 | 4500 | 3.4 | 900 | 20.6 |
101344 | 750 | 25.0 | 3750 | 2.3 | 1887 | 20.5 |
101345 | 750 | 25.0 | 3750 | 2.3 | 1924 | 20.5 |
101346 | 750 | 25.0 | 3750 | 2.3 | 1961 | 20.5 |
101347 | 750 | 25.0 | 3750 | 2.3 | 1998 | 20.5 |
101483 | 650 | 21.7 | 3250 | 1.4 | 2016 | 18.9 |
101484 | 650 | 21.7 | 3250 | 1.4 | 2048 | 18.9 |
101485 | 650 | 21.7 | 3250 | 1.4 | 2080 | 18.9 |
101486 | 650 | 21.7 | 3250 | 1.4 | 2112 | 18.9 |
101410 | 700 | 23.3 | 3500 | 2.4 | 1960 | 18.5 |
101411 | 700 | 23.3 | 3500 | 2.4 | 1995 | 18.5 |
101565 | 600 | 20.0 | 3000 | 1.3 | 2130 | 17.3 |
101562 | 600 | 20.0 | 3000 | 1.5 | 2040 | 17.0 |
101563 | 600 | 20.0 | 3000 | 1.5 | 2070 | 17.0 |
101564 | 600 | 20.0 | 3000 | 1.5 | 2100 | 17.0 |
101678 | 500 | 16.2 | 2500 | 0.2 | 300 | 15.8 |
101380 | 700 | 21.3 | 3500 | 3.0 | 910 | 15.3 |
101653 | 550 | 18.3 | 2750 | 1.6 | 2106 | 15.1 |
101585 | 550 | 17.9 | 2750 | 3.8 | 270 | 10.2 |
Overall score = score_ratio - 2 * repetitive DNA content