Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign35 - back to list
Summary
./analyse_probe_search_results : Mon Sep 5 11:30:45 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign35 assembly : NCBIM34 bias : 3prime chromosome : X id : 11 strand : 1 ------------- Design window length: 5232bp All jobs for probe design are successful - total: 94 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 1865 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 1865/1865 Putative probes exceeding selection criteria: 332/1865 PASSED (GREEN) AND FAILED PUTATIVE PROBES IN THE DESIGN WINDOW --------------------------------------------------------------
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
No probes
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
9192 | 1000 | 29.8 | 5000 | 0.9 | 450 | 28.0 |
9191 | 1000 | 29.4 | 5000 | 1.2 | 400 | 27.0 |
9277 | 950 | 28.3 | 4750 | 0.9 | 423 | 26.4 |
9279 | 950 | 28.3 | 4750 | 1.2 | 517 | 26.0 |
9369 | 900 | 27.6 | 4500 | 1.0 | 405 | 25.6 |
9471 | 850 | 25.3 | 4250 | 0.2 | 588 | 24.8 |
9370 | 900 | 26.8 | 4500 | 1.0 | 450 | 24.8 |
9371 | 900 | 26.8 | 4500 | 1.0 | 495 | 24.8 |
9467 | 850 | 26.1 | 4250 | 1.1 | 420 | 24.0 |
9468 | 850 | 26.1 | 4250 | 1.1 | 462 | 24.0 |
9577 | 800 | 23.8 | 4000 | - | 600 | 23.8 |
9578 | 800 | 23.8 | 4000 | - | 640 | 23.8 |
9469 | 850 | 25.3 | 4250 | 1.1 | 504 | 23.2 |
9470 | 850 | 25.3 | 4250 | 1.1 | 546 | 23.2 |
9689 | 750 | 22.3 | 3750 | - | 592 | 22.3 |
9690 | 750 | 22.3 | 3750 | - | 629 | 22.3 |
9691 | 750 | 22.3 | 3750 | - | 666 | 22.3 |
9692 | 750 | 22.3 | 3750 | - | 703 | 22.3 |
9573 | 800 | 24.5 | 4000 | 1.1 | 440 | 22.3 |
9574 | 800 | 24.5 | 4000 | 1.1 | 480 | 22.3 |
9575 | 800 | 24.5 | 4000 | 1.1 | 520 | 22.3 |
9472 | 850 | 25.3 | 4250 | 1.8 | 630 | 21.8 |
9576 | 800 | 23.8 | 4000 | 1.1 | 560 | 21.6 |
9812 | 700 | 21.5 | 3500 | - | 595 | 21.5 |
9813 | 700 | 21.5 | 3500 | - | 630 | 21.5 |
9190 | 1000 | 28.2 | 5000 | 3.4 | 350 | 21.4 |
9183 | 1000 | 28.1 | 5000 | 3.4 | 0 | 21.3 |
9184 | 1000 | 28.1 | 5000 | 3.4 | 50 | 21.3 |
9185 | 1000 | 28.1 | 5000 | 3.4 | 100 | 21.3 |
9186 | 1000 | 28.1 | 5000 | 3.4 | 150 | 21.3 |
9187 | 1000 | 28.1 | 5000 | 3.4 | 200 | 21.3 |
9188 | 1000 | 28.1 | 5000 | 3.4 | 250 | 21.3 |
9189 | 1000 | 28.1 | 5000 | 3.4 | 300 | 21.3 |
9373 | 900 | 26.8 | 4500 | 2.8 | 585 | 21.2 |
9193 | 1000 | 29.8 | 5000 | 4.4 | 500 | 21.0 |
9814 | 700 | 20.8 | 3500 | - | 665 | 20.8 |
9815 | 700 | 20.8 | 3500 | - | 700 | 20.8 |
9816 | 700 | 20.8 | 3500 | - | 735 | 20.8 |
9684 | 750 | 23.0 | 3750 | 1.2 | 407 | 20.6 |
9685 | 750 | 23.0 | 3750 | 1.2 | 444 | 20.6 |
9686 | 750 | 23.0 | 3750 | 1.2 | 481 | 20.6 |
9687 | 750 | 23.0 | 3750 | 1.2 | 518 | 20.6 |
9688 | 750 | 23.0 | 3750 | 1.2 | 555 | 20.6 |
9572 | 800 | 23.5 | 4000 | 1.5 | 400 | 20.5 |
9579 | 800 | 23.8 | 4000 | 1.9 | 680 | 20.1 |
9944 | 650 | 19.9 | 3250 | - | 608 | 19.9 |
9945 | 650 | 19.9 | 3250 | - | 640 | 19.9 |
9946 | 650 | 19.9 | 3250 | - | 672 | 19.9 |
9817 | 700 | 20.8 | 3500 | 0.7 | 770 | 19.4 |
9947 | 650 | 19.3 | 3250 | - | 704 | 19.3 |
9948 | 650 | 19.3 | 3250 | - | 736 | 19.3 |
9949 | 650 | 19.3 | 3250 | - | 768 | 19.3 |
9950 | 650 | 19.3 | 3250 | - | 800 | 19.3 |
9807 | 700 | 21.5 | 3500 | 1.3 | 420 | 18.9 |
9808 | 700 | 21.5 | 3500 | 1.3 | 455 | 18.9 |
9809 | 700 | 21.5 | 3500 | 1.3 | 490 | 18.9 |
9810 | 700 | 21.5 | 3500 | 1.3 | 525 | 18.9 |
9811 | 700 | 21.5 | 3500 | 1.3 | 560 | 18.9 |
10033 | 650 | 18.9 | 3250 | - | 3456 | 18.9 |
10034 | 650 | 18.9 | 3250 | - | 3488 | 18.9 |
10089 | 600 | 18.4 | 3000 | - | 600 | 18.4 |
10090 | 600 | 18.4 | 3000 | - | 630 | 18.4 |
10091 | 600 | 18.4 | 3000 | - | 660 | 18.4 |
10092 | 600 | 18.4 | 3000 | - | 690 | 18.4 |
10093 | 600 | 18.4 | 3000 | - | 720 | 18.4 |
10094 | 600 | 17.9 | 3000 | - | 750 | 17.9 |
10095 | 600 | 17.9 | 3000 | - | 780 | 17.9 |
10096 | 600 | 17.9 | 3000 | - | 810 | 17.9 |
10097 | 600 | 17.9 | 3000 | - | 840 | 17.9 |
10184 | 600 | 17.4 | 3000 | - | 3450 | 17.4 |
10185 | 600 | 17.4 | 3000 | - | 3480 | 17.4 |
10186 | 600 | 17.4 | 3000 | - | 3510 | 17.4 |
10187 | 600 | 17.4 | 3000 | - | 3540 | 17.4 |
9938 | 650 | 19.9 | 3250 | 1.4 | 416 | 17.2 |
9939 | 650 | 19.9 | 3250 | 1.4 | 448 | 17.2 |
9940 | 650 | 19.9 | 3250 | 1.4 | 480 | 17.2 |
9941 | 650 | 19.9 | 3250 | 1.4 | 512 | 17.2 |
9942 | 650 | 19.9 | 3250 | 1.4 | 544 | 17.2 |
9943 | 650 | 19.9 | 3250 | 1.4 | 576 | 17.2 |
9893 | 700 | 20.3 | 3500 | 1.7 | 3430 | 16.9 |
10246 | 550 | 16.9 | 2750 | - | 594 | 16.9 |
10247 | 550 | 16.9 | 2750 | - | 621 | 16.9 |
10248 | 550 | 16.9 | 2750 | - | 648 | 16.9 |
10249 | 550 | 16.9 | 2750 | - | 675 | 16.9 |
10250 | 550 | 16.9 | 2750 | - | 702 | 16.9 |
10251 | 550 | 16.9 | 2750 | - | 729 | 16.9 |
10252 | 550 | 16.9 | 2750 | - | 756 | 16.9 |
10253 | 550 | 16.9 | 2750 | - | 783 | 16.9 |
10254 | 550 | 16.4 | 2750 | - | 810 | 16.4 |
10255 | 550 | 16.4 | 2750 | - | 837 | 16.4 |
10256 | 550 | 16.4 | 2750 | - | 864 | 16.4 |
10257 | 550 | 16.4 | 2750 | - | 891 | 16.4 |
10098 | 600 | 17.9 | 3000 | 0.8 | 870 | 16.2 |
10352 | 550 | 16.0 | 2750 | - | 3456 | 16.0 |
10353 | 550 | 16.0 | 2750 | - | 3483 | 16.0 |
10354 | 550 | 16.0 | 2750 | - | 3510 | 16.0 |
10355 | 550 | 16.0 | 2750 | - | 3537 | 16.0 |
10356 | 550 | 16.0 | 2750 | - | 3564 | 16.0 |
10357 | 550 | 16.0 | 2750 | - | 3591 | 16.0 |
9693 | 750 | 22.3 | 3750 | 3.3 | 740 | 15.7 |
10083 | 600 | 18.4 | 3000 | 1.5 | 420 | 15.4 |
10084 | 600 | 18.4 | 3000 | 1.5 | 450 | 15.4 |
10085 | 600 | 18.4 | 3000 | 1.5 | 480 | 15.4 |
10086 | 600 | 18.4 | 3000 | 1.5 | 510 | 15.4 |
10087 | 600 | 18.4 | 3000 | 1.5 | 540 | 15.4 |
10088 | 600 | 18.4 | 3000 | 1.5 | 570 | 15.4 |
10422 | 500 | 15.3 | 2500 | - | 600 | 15.3 |
10423 | 500 | 15.3 | 2500 | - | 625 | 15.3 |
10424 | 500 | 15.3 | 2500 | - | 650 | 15.3 |
10425 | 500 | 15.3 | 2500 | - | 675 | 15.3 |
10426 | 500 | 15.3 | 2500 | - | 700 | 15.3 |
10427 | 500 | 15.3 | 2500 | - | 725 | 15.3 |
10428 | 500 | 15.3 | 2500 | - | 750 | 15.3 |
10429 | 500 | 15.3 | 2500 | - | 775 | 15.3 |
10430 | 500 | 15.3 | 2500 | - | 800 | 15.3 |
10431 | 500 | 15.3 | 2500 | - | 825 | 15.3 |
10258 | 550 | 16.4 | 2750 | 0.5 | 918 | 15.3 |
10432 | 500 | 14.9 | 2500 | - | 850 | 14.9 |
10433 | 500 | 14.9 | 2500 | - | 875 | 14.9 |
10434 | 500 | 14.9 | 2500 | - | 900 | 14.9 |
10435 | 500 | 14.9 | 2500 | - | 925 | 14.9 |
10436 | 500 | 14.9 | 2500 | - | 950 | 14.9 |
10536 | 500 | 14.5 | 2500 | - | 3450 | 14.5 |
10537 | 500 | 14.5 | 2500 | - | 3475 | 14.5 |
10538 | 500 | 14.5 | 2500 | - | 3500 | 14.5 |
10539 | 500 | 14.5 | 2500 | - | 3525 | 14.5 |
10540 | 500 | 14.5 | 2500 | - | 3550 | 14.5 |
10541 | 500 | 14.5 | 2500 | - | 3575 | 14.5 |
10542 | 500 | 14.5 | 2500 | - | 3600 | 14.5 |
10543 | 500 | 14.5 | 2500 | - | 3625 | 14.5 |
10240 | 550 | 17.7 | 2750 | 1.6 | 432 | 14.5 |
10755 | 450 | 14.2 | 2250 | - | 3674 | 14.2 |
9951 | 650 | 19.3 | 3250 | 2.6 | 832 | 14.1 |
10615 | 450 | 13.8 | 2250 | - | 594 | 13.8 |
10616 | 450 | 13.8 | 2250 | - | 616 | 13.8 |
10617 | 450 | 13.8 | 2250 | - | 638 | 13.8 |
10618 | 450 | 13.8 | 2250 | - | 660 | 13.8 |
10619 | 450 | 13.8 | 2250 | - | 682 | 13.8 |
10620 | 450 | 13.8 | 2250 | - | 704 | 13.8 |
10621 | 450 | 13.8 | 2250 | - | 726 | 13.8 |
10622 | 450 | 13.8 | 2250 | - | 748 | 13.8 |
10623 | 450 | 13.8 | 2250 | - | 770 | 13.8 |
10624 | 450 | 13.8 | 2250 | - | 792 | 13.8 |
10625 | 450 | 13.8 | 2250 | - | 814 | 13.8 |
10626 | 450 | 13.8 | 2250 | - | 836 | 13.8 |
10627 | 450 | 13.8 | 2250 | - | 858 | 13.8 |
10628 | 450 | 13.8 | 2250 | - | 880 | 13.8 |
10239 | 550 | 16.9 | 2750 | 1.6 | 405 | 13.6 |
10241 | 550 | 16.9 | 2750 | 1.6 | 459 | 13.6 |
10242 | 550 | 16.9 | 2750 | 1.6 | 486 | 13.6 |
10243 | 550 | 16.9 | 2750 | 1.6 | 513 | 13.6 |
10244 | 550 | 16.9 | 2750 | 1.6 | 540 | 13.6 |
10245 | 550 | 16.9 | 2750 | 1.6 | 567 | 13.6 |
9894 | 700 | 20.3 | 3500 | 3.4 | 3465 | 13.5 |
10629 | 450 | 13.4 | 2250 | - | 902 | 13.4 |
10630 | 450 | 13.4 | 2250 | - | 924 | 13.4 |
10631 | 450 | 13.4 | 2250 | - | 946 | 13.4 |
10632 | 450 | 13.4 | 2250 | - | 968 | 13.4 |
10633 | 450 | 13.4 | 2250 | - | 990 | 13.4 |
10634 | 450 | 13.4 | 2250 | - | 1012 | 13.4 |
10032 | 650 | 18.9 | 3250 | 2.8 | 3424 | 13.4 |
10754 | 450 | 13.2 | 2250 | - | 3652 | 13.2 |
10745 | 450 | 13.1 | 2250 | - | 3454 | 13.1 |
10746 | 450 | 13.1 | 2250 | - | 3476 | 13.1 |
10747 | 450 | 13.1 | 2250 | - | 3498 | 13.1 |
10748 | 450 | 13.1 | 2250 | - | 3520 | 13.1 |
10749 | 450 | 13.1 | 2250 | - | 3542 | 13.1 |
10750 | 450 | 13.1 | 2250 | - | 3564 | 13.1 |
10751 | 450 | 13.1 | 2250 | - | 3586 | 13.1 |
10752 | 450 | 13.1 | 2250 | - | 3608 | 13.1 |
10753 | 450 | 13.1 | 2250 | - | 3630 | 13.1 |
10990 | 400 | 12.7 | 2000 | - | 3680 | 12.7 |
10991 | 400 | 12.7 | 2000 | - | 3700 | 12.7 |
10992 | 400 | 12.7 | 2000 | - | 3720 | 12.7 |
10993 | 400 | 12.7 | 2000 | - | 3740 | 12.7 |
10416 | 500 | 16.2 | 2500 | 1.8 | 450 | 12.6 |
10417 | 500 | 16.2 | 2500 | 1.8 | 475 | 12.6 |
10415 | 500 | 16.1 | 2500 | 1.8 | 425 | 12.5 |
10836 | 400 | 12.3 | 2000 | - | 600 | 12.3 |
10837 | 400 | 12.3 | 2000 | - | 620 | 12.3 |
10838 | 400 | 12.3 | 2000 | - | 640 | 12.3 |
10839 | 400 | 12.3 | 2000 | - | 660 | 12.3 |
10840 | 400 | 12.3 | 2000 | - | 680 | 12.3 |
10841 | 400 | 12.3 | 2000 | - | 700 | 12.3 |
10842 | 400 | 12.3 | 2000 | - | 720 | 12.3 |
10843 | 400 | 12.3 | 2000 | - | 740 | 12.3 |
10844 | 400 | 12.3 | 2000 | - | 760 | 12.3 |
10845 | 400 | 12.3 | 2000 | - | 780 | 12.3 |
10846 | 400 | 12.3 | 2000 | - | 800 | 12.3 |
10847 | 400 | 12.3 | 2000 | - | 820 | 12.3 |
10848 | 400 | 12.3 | 2000 | - | 840 | 12.3 |
10849 | 400 | 12.3 | 2000 | - | 860 | 12.3 |
10850 | 400 | 12.3 | 2000 | - | 880 | 12.3 |
10851 | 400 | 12.3 | 2000 | - | 900 | 12.3 |
10852 | 400 | 12.3 | 2000 | - | 920 | 12.3 |
10756 | 450 | 14.2 | 2250 | 1.1 | 3696 | 12.0 |
10853 | 400 | 11.9 | 2000 | - | 940 | 11.9 |
10854 | 400 | 11.9 | 2000 | - | 960 | 11.9 |
10855 | 400 | 11.9 | 2000 | - | 980 | 11.9 |
10856 | 400 | 11.9 | 2000 | - | 1000 | 11.9 |
10857 | 400 | 11.9 | 2000 | - | 1020 | 11.9 |
10858 | 400 | 11.9 | 2000 | - | 1040 | 11.9 |
10859 | 400 | 11.9 | 2000 | - | 1060 | 11.9 |
10989 | 400 | 11.8 | 2000 | - | 3660 | 11.8 |
10418 | 500 | 15.3 | 2500 | 1.8 | 500 | 11.7 |
10419 | 500 | 15.3 | 2500 | 1.8 | 525 | 11.7 |
10420 | 500 | 15.3 | 2500 | 1.8 | 550 | 11.7 |
10421 | 500 | 15.3 | 2500 | 1.8 | 575 | 11.7 |
10979 | 400 | 11.6 | 2000 | - | 3460 | 11.6 |
10980 | 400 | 11.6 | 2000 | - | 3480 | 11.6 |
10981 | 400 | 11.6 | 2000 | - | 3500 | 11.6 |
10982 | 400 | 11.6 | 2000 | - | 3520 | 11.6 |
10983 | 400 | 11.6 | 2000 | - | 3540 | 11.6 |
10984 | 400 | 11.6 | 2000 | - | 3560 | 11.6 |
10985 | 400 | 11.6 | 2000 | - | 3580 | 11.6 |
10986 | 400 | 11.6 | 2000 | - | 3600 | 11.6 |
10987 | 400 | 11.6 | 2000 | - | 3620 | 11.6 |
10988 | 400 | 11.6 | 2000 | - | 3640 | 11.6 |
10351 | 550 | 16.0 | 2750 | 2.4 | 3429 | 11.3 |
10544 | 500 | 14.6 | 2500 | 1.8 | 3650 | 11.0 |
10437 | 500 | 14.9 | 2500 | 2.0 | 975 | 10.9 |
10978 | 400 | 11.6 | 2000 | 0.5 | 3440 | 10.6 |
10608 | 450 | 14.6 | 2250 | 2.0 | 440 | 10.6 |
10609 | 450 | 14.6 | 2250 | 2.0 | 462 | 10.6 |
10610 | 450 | 14.6 | 2250 | 2.0 | 484 | 10.6 |
10611 | 450 | 14.6 | 2250 | 2.0 | 506 | 10.6 |
10612 | 450 | 14.6 | 2250 | 2.0 | 528 | 10.6 |
10183 | 600 | 17.4 | 3000 | 3.7 | 3420 | 10.1 |
10414 | 500 | 14.7 | 2500 | 2.4 | 400 | 9.9 |
10607 | 450 | 13.9 | 2250 | 2.0 | 418 | 9.9 |
10613 | 450 | 13.8 | 2250 | 2.0 | 550 | 9.8 |
10614 | 450 | 13.8 | 2250 | 2.0 | 572 | 9.8 |
10008 | 650 | 18.2 | 3250 | 4.5 | 2656 | 9.2 |
10009 | 650 | 18.2 | 3250 | 4.6 | 2688 | 8.9 |
10035 | 650 | 17.8 | 3250 | 4.5 | 3520 | 8.8 |
10828 | 400 | 13.0 | 2000 | 2.2 | 440 | 8.5 |
10829 | 400 | 13.0 | 2000 | 2.2 | 460 | 8.5 |
10830 | 400 | 13.0 | 2000 | 2.2 | 480 | 8.5 |
10831 | 400 | 13.0 | 2000 | 2.2 | 500 | 8.5 |
10832 | 400 | 13.0 | 2000 | 2.2 | 520 | 8.5 |
10833 | 400 | 13.0 | 2000 | 2.2 | 540 | 8.5 |
10834 | 400 | 13.0 | 2000 | 2.2 | 560 | 8.5 |
10835 | 400 | 13.0 | 2000 | 2.2 | 580 | 8.5 |
10827 | 400 | 12.4 | 2000 | 2.2 | 420 | 7.9 |
10160 | 600 | 16.8 | 3000 | 4.5 | 2730 | 7.8 |
10826 | 400 | 11.8 | 2000 | 3.0 | 400 | 5.8 |
10635 | 450 | 13.4 | 2250 | 4.2 | 1034 | 4.9 |
10860 | 400 | 11.9 | 2000 | 3.8 | 1080 | 4.4 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
9278 | 950 | 28.3 | 4750 | 0.9 | 470 | 26.4 |
9372 | 900 | 26.8 | 4500 | 1.0 | 540 | 24.8 |
9276 | 950 | 26.8 | 4750 | 3.6 | 376 | 19.7 |
9268 | 950 | 26.7 | 4750 | 3.6 | 0 | 19.5 |
9269 | 950 | 26.7 | 4750 | 3.6 | 47 | 19.5 |
9270 | 950 | 26.7 | 4750 | 3.6 | 94 | 19.5 |
9271 | 950 | 26.7 | 4750 | 3.6 | 141 | 19.5 |
9272 | 950 | 26.7 | 4750 | 3.6 | 188 | 19.5 |
9273 | 950 | 26.7 | 4750 | 3.6 | 235 | 19.5 |
9274 | 950 | 26.7 | 4750 | 3.6 | 282 | 19.5 |
9275 | 950 | 26.7 | 4750 | 3.6 | 329 | 19.5 |
9368 | 900 | 25.4 | 4500 | 3.8 | 360 | 17.9 |
9360 | 900 | 25.3 | 4500 | 3.8 | 0 | 17.7 |
9361 | 900 | 25.3 | 4500 | 3.8 | 45 | 17.7 |
9362 | 900 | 25.3 | 4500 | 3.8 | 90 | 17.7 |
9363 | 900 | 25.3 | 4500 | 3.8 | 135 | 17.7 |
9364 | 900 | 25.3 | 4500 | 3.8 | 180 | 17.7 |
9365 | 900 | 25.3 | 4500 | 3.8 | 225 | 17.7 |
9366 | 900 | 25.3 | 4500 | 3.8 | 270 | 17.7 |
9367 | 900 | 25.3 | 4500 | 3.8 | 315 | 17.7 |
9466 | 850 | 24.0 | 4250 | 4.0 | 378 | 16.0 |
9457 | 850 | 23.9 | 4250 | 4.0 | 0 | 15.9 |
9458 | 850 | 23.9 | 4250 | 4.0 | 42 | 15.9 |
9459 | 850 | 23.9 | 4250 | 4.0 | 84 | 15.9 |
9460 | 850 | 23.9 | 4250 | 4.0 | 126 | 15.9 |
9461 | 850 | 23.9 | 4250 | 4.0 | 168 | 15.9 |
9462 | 850 | 23.9 | 4250 | 4.0 | 210 | 15.9 |
9463 | 850 | 23.9 | 4250 | 4.0 | 252 | 15.9 |
9464 | 850 | 23.9 | 4250 | 4.0 | 294 | 15.9 |
9465 | 850 | 23.9 | 4250 | 4.0 | 336 | 15.9 |
9571 | 800 | 22.6 | 4000 | 4.2 | 360 | 14.1 |
9562 | 800 | 22.5 | 4000 | 4.2 | 0 | 14.0 |
9563 | 800 | 22.5 | 4000 | 4.2 | 40 | 14.0 |
9564 | 800 | 22.5 | 4000 | 4.2 | 80 | 14.0 |
9565 | 800 | 22.5 | 4000 | 4.2 | 120 | 14.0 |
9566 | 800 | 22.5 | 4000 | 4.2 | 160 | 14.0 |
9567 | 800 | 22.5 | 4000 | 4.2 | 200 | 14.0 |
9568 | 800 | 22.5 | 4000 | 4.2 | 240 | 14.0 |
9569 | 800 | 22.5 | 4000 | 4.2 | 280 | 14.0 |
9570 | 800 | 22.5 | 4000 | 4.2 | 320 | 14.0 |
9683 | 750 | 21.2 | 3750 | 4.5 | 370 | 12.1 |
9806 | 700 | 19.8 | 3500 | 3.9 | 385 | 12.1 |
9673 | 750 | 21.1 | 3750 | 4.5 | 0 | 12.0 |
9674 | 750 | 21.1 | 3750 | 4.5 | 37 | 12.0 |
9675 | 750 | 21.1 | 3750 | 4.5 | 74 | 12.0 |
9676 | 750 | 21.1 | 3750 | 4.5 | 111 | 12.0 |
9677 | 750 | 21.1 | 3750 | 4.5 | 148 | 12.0 |
9678 | 750 | 21.1 | 3750 | 4.5 | 185 | 12.0 |
9679 | 750 | 21.1 | 3750 | 4.5 | 222 | 12.0 |
9680 | 750 | 21.1 | 3750 | 4.5 | 259 | 12.0 |
9681 | 750 | 21.1 | 3750 | 4.5 | 296 | 12.0 |
9682 | 750 | 21.1 | 3750 | 4.5 | 333 | 12.0 |
9805 | 700 | 19.8 | 3500 | 4.9 | 350 | 10.1 |
9795 | 700 | 19.7 | 3500 | 4.9 | 0 | 9.9 |
9796 | 700 | 19.7 | 3500 | 4.9 | 35 | 9.9 |
9797 | 700 | 19.7 | 3500 | 4.9 | 70 | 9.9 |
9798 | 700 | 19.7 | 3500 | 4.9 | 105 | 9.9 |
9799 | 700 | 19.7 | 3500 | 4.9 | 140 | 9.9 |
9800 | 700 | 19.7 | 3500 | 4.9 | 175 | 9.9 |
9801 | 700 | 19.7 | 3500 | 4.9 | 210 | 9.9 |
9802 | 700 | 19.7 | 3500 | 4.9 | 245 | 9.9 |
9803 | 700 | 19.7 | 3500 | 4.9 | 280 | 9.9 |
9804 | 700 | 19.7 | 3500 | 4.9 | 315 | 9.9 |
9937 | 650 | 18.4 | 3250 | 4.3 | 384 | 9.7 |
10082 | 600 | 16.9 | 3000 | 3.7 | 390 | 9.6 |
10744 | 450 | 13.1 | 2250 | 2.2 | 3432 | 8.6 |
10158 | 600 | 16.8 | 3000 | 4.5 | 2670 | 7.8 |
10159 | 600 | 16.8 | 3000 | 4.5 | 2700 | 7.8 |
10535 | 500 | 14.5 | 2500 | 3.4 | 3425 | 7.7 |
10188 | 600 | 16.4 | 3000 | 4.8 | 3570 | 6.7 |
10224 | 550 | 15.4 | 2750 | 4.5 | 0 | 6.4 |
10225 | 550 | 15.4 | 2750 | 4.5 | 27 | 6.4 |
10358 | 550 | 15.9 | 2750 | 4.9 | 3618 | 6.1 |
10606 | 450 | 13.0 | 2250 | 3.6 | 396 | 5.9 |
10323 | 550 | 15.4 | 2750 | 4.9 | 2673 | 5.5 |
10324 | 550 | 15.4 | 2750 | 4.9 | 2700 | 5.5 |
10325 | 550 | 15.4 | 2750 | 4.9 | 2727 | 5.5 |
10326 | 550 | 15.4 | 2750 | 4.9 | 2754 | 5.5 |
10327 | 550 | 15.4 | 2750 | 4.9 | 2781 | 5.5 |
10398 | 500 | 14.0 | 2500 | 5.0 | 0 | 4.0 |
10399 | 500 | 14.0 | 2500 | 5.0 | 25 | 4.0 |
10400 | 500 | 14.0 | 2500 | 5.0 | 50 | 4.0 |
10401 | 500 | 14.0 | 2500 | 5.0 | 75 | 4.0 |
10994 | 400 | 12.7 | 2000 | 4.8 | 3760 | 3.2 |
Overall score = score_ratio - 2 * repetitive DNA content