Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign42 - back to list
Summary
./analyse_probe_search_results : Tue Sep 13 14:29:52 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign42 assembly : NCBIM34 bias : 5prime chromosome : X id : 24 strand : 1 ------------- Design window length: 3501bp All jobs for probe design are successful - total: 56 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 1114 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 5prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 1114/1114 Putative probes exceeding selection criteria: 303/1114 PASSED (GREEN) AND FAILED PUTATIVE PROBES IN THE DESIGN WINDOW --------------------------------------------------------------
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
No probes
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
26207 | 1150 | 35.7 | 5750 | - | 2337 | 35.7 |
26251 | 1100 | 34.2 | 5500 | - | 2365 | 34.2 |
26206 | 1150 | 35.1 | 5750 | 0.8 | 2280 | 33.5 |
26250 | 1100 | 34.2 | 5500 | 0.5 | 2310 | 33.3 |
26297 | 1050 | 32.6 | 5250 | - | 2340 | 32.6 |
26298 | 1050 | 32.6 | 5250 | - | 2392 | 32.6 |
26299 | 1050 | 32.6 | 5250 | - | 2444 | 32.6 |
26126 | 1250 | 34.0 | 6250 | 0.7 | 2232 | 32.5 |
26249 | 1100 | 33.5 | 5500 | 0.8 | 2255 | 31.9 |
26347 | 1000 | 31.1 | 5000 | - | 2350 | 31.1 |
26348 | 1000 | 31.1 | 5000 | - | 2400 | 31.1 |
26349 | 1000 | 31.1 | 5000 | - | 2450 | 31.1 |
26089 | 1300 | 33.5 | 6500 | 1.2 | 2145 | 31.0 |
26125 | 1250 | 32.2 | 6250 | 0.7 | 2170 | 30.8 |
26350 | 1000 | 31.1 | 5000 | 0.3 | 2500 | 30.5 |
26296 | 1050 | 32.0 | 5250 | 0.9 | 2288 | 30.3 |
26401 | 950 | 29.5 | 4750 | - | 2350 | 29.5 |
26402 | 950 | 29.5 | 4750 | - | 2397 | 29.5 |
26403 | 950 | 29.5 | 4750 | - | 2444 | 29.5 |
26404 | 950 | 29.5 | 4750 | - | 2491 | 29.5 |
26405 | 950 | 29.5 | 4750 | - | 2538 | 29.5 |
26163 | 1200 | 30.9 | 6000 | 0.8 | 2160 | 29.4 |
26164 | 1200 | 30.9 | 6000 | 0.8 | 2220 | 29.4 |
26346 | 1000 | 31.1 | 5000 | 0.9 | 2300 | 29.3 |
26345 | 1000 | 30.5 | 5000 | 0.9 | 2250 | 28.7 |
26204 | 1150 | 29.6 | 5750 | 0.8 | 2166 | 28.1 |
26205 | 1150 | 29.6 | 5750 | 0.8 | 2223 | 28.1 |
26458 | 900 | 28.0 | 4500 | - | 2340 | 28.0 |
26459 | 900 | 28.0 | 4500 | - | 2385 | 28.0 |
26460 | 900 | 28.0 | 4500 | - | 2430 | 28.0 |
26461 | 900 | 28.0 | 4500 | - | 2475 | 28.0 |
26462 | 900 | 28.0 | 4500 | - | 2520 | 28.0 |
26463 | 900 | 28.0 | 4500 | - | 2565 | 28.0 |
26295 | 1050 | 29.7 | 5250 | 0.9 | 2236 | 27.9 |
26400 | 950 | 29.5 | 4750 | 0.9 | 2303 | 27.6 |
26248 | 1100 | 28.4 | 5500 | 0.8 | 2200 | 26.7 |
26521 | 850 | 26.4 | 4250 | - | 2394 | 26.4 |
26522 | 850 | 26.4 | 4250 | - | 2436 | 26.4 |
26523 | 850 | 26.4 | 4250 | - | 2478 | 26.4 |
26524 | 850 | 26.4 | 4250 | - | 2520 | 26.4 |
26525 | 850 | 26.4 | 4250 | - | 2562 | 26.4 |
26526 | 850 | 26.4 | 4250 | - | 2604 | 26.4 |
26527 | 850 | 26.4 | 4250 | - | 2646 | 26.4 |
26519 | 850 | 27.4 | 4250 | 0.6 | 2310 | 26.2 |
26520 | 850 | 26.2 | 4250 | - | 2352 | 26.2 |
26586 | 800 | 26.0 | 4000 | - | 2320 | 26.0 |
26587 | 800 | 25.8 | 4000 | - | 2360 | 25.8 |
26588 | 800 | 25.8 | 4000 | - | 2400 | 25.8 |
26484 | 850 | 25.8 | 4250 | - | 840 | 25.8 |
26399 | 950 | 27.6 | 4750 | 0.9 | 2256 | 25.7 |
26247 | 1100 | 28.4 | 5500 | 1.5 | 2145 | 25.4 |
26456 | 900 | 27.4 | 4500 | 1.0 | 2250 | 25.4 |
26457 | 900 | 27.4 | 4500 | 1.0 | 2295 | 25.4 |
26294 | 1050 | 27.1 | 5250 | 0.9 | 2184 | 25.3 |
26485 | 850 | 25.8 | 4250 | 0.2 | 882 | 25.3 |
26589 | 800 | 24.8 | 4000 | - | 2440 | 24.8 |
26590 | 800 | 24.8 | 4000 | - | 2480 | 24.8 |
26591 | 800 | 24.8 | 4000 | - | 2520 | 24.8 |
26592 | 800 | 24.8 | 4000 | - | 2560 | 24.8 |
26593 | 800 | 24.8 | 4000 | - | 2600 | 24.8 |
26594 | 800 | 24.8 | 4000 | - | 2640 | 24.8 |
26595 | 800 | 24.8 | 4000 | - | 2680 | 24.8 |
26659 | 750 | 24.4 | 3750 | - | 2331 | 24.4 |
26660 | 750 | 24.4 | 3750 | - | 2368 | 24.4 |
26549 | 800 | 24.2 | 4000 | - | 840 | 24.2 |
26550 | 800 | 24.2 | 4000 | - | 880 | 24.2 |
26551 | 800 | 24.2 | 4000 | - | 920 | 24.2 |
26661 | 750 | 24.2 | 3750 | - | 2405 | 24.2 |
26662 | 750 | 24.2 | 3750 | - | 2442 | 24.2 |
26344 | 1000 | 25.8 | 5000 | 0.9 | 2200 | 24.0 |
26518 | 850 | 25.9 | 4250 | 1.1 | 2268 | 23.8 |
26124 | 1250 | 32.2 | 6250 | 4.2 | 2108 | 23.7 |
26343 | 1000 | 25.8 | 5000 | 1.1 | 2150 | 23.6 |
26663 | 750 | 23.3 | 3750 | - | 2479 | 23.3 |
26664 | 750 | 23.3 | 3750 | - | 2516 | 23.3 |
26665 | 750 | 23.3 | 3750 | - | 2553 | 23.3 |
26666 | 750 | 23.3 | 3750 | - | 2590 | 23.3 |
26667 | 750 | 23.3 | 3750 | - | 2627 | 23.3 |
26668 | 750 | 23.3 | 3750 | - | 2664 | 23.3 |
26669 | 750 | 23.3 | 3750 | - | 2701 | 23.3 |
26670 | 750 | 23.3 | 3750 | - | 2738 | 23.3 |
26739 | 700 | 23.2 | 3500 | - | 2380 | 23.2 |
26740 | 700 | 23.2 | 3500 | - | 2415 | 23.2 |
26741 | 700 | 23.2 | 3500 | - | 2450 | 23.2 |
26088 | 1300 | 32.7 | 6500 | 4.8 | 2080 | 23.0 |
26619 | 750 | 22.7 | 3750 | - | 851 | 22.7 |
26620 | 750 | 22.7 | 3750 | - | 888 | 22.7 |
26621 | 750 | 22.7 | 3750 | - | 925 | 22.7 |
26622 | 750 | 22.7 | 3750 | - | 962 | 22.7 |
26738 | 700 | 22.7 | 3500 | - | 2345 | 22.7 |
26397 | 950 | 24.5 | 4750 | 0.9 | 2162 | 22.6 |
26398 | 950 | 24.5 | 4750 | 0.9 | 2209 | 22.6 |
26742 | 700 | 22.6 | 3500 | - | 2485 | 22.6 |
26585 | 800 | 24.4 | 4000 | 1.1 | 2280 | 22.1 |
26743 | 700 | 21.7 | 3500 | - | 2520 | 21.7 |
26744 | 700 | 21.7 | 3500 | - | 2555 | 21.7 |
26745 | 700 | 21.7 | 3500 | - | 2590 | 21.7 |
26746 | 700 | 21.7 | 3500 | - | 2625 | 21.7 |
26747 | 700 | 21.7 | 3500 | - | 2660 | 21.7 |
26748 | 700 | 21.7 | 3500 | - | 2695 | 21.7 |
26749 | 700 | 21.7 | 3500 | - | 2730 | 21.7 |
26750 | 700 | 21.7 | 3500 | - | 2765 | 21.7 |
26425 | 900 | 27.3 | 4500 | 2.8 | 855 | 21.7 |
26293 | 1050 | 27.1 | 5250 | 2.8 | 2132 | 21.5 |
26827 | 650 | 21.5 | 3250 | - | 2400 | 21.5 |
26828 | 650 | 21.5 | 3250 | - | 2432 | 21.5 |
26829 | 650 | 21.5 | 3250 | - | 2464 | 21.5 |
26830 | 650 | 21.5 | 3250 | - | 2496 | 21.5 |
26737 | 700 | 22.7 | 3500 | 0.7 | 2310 | 21.3 |
26695 | 700 | 21.2 | 3500 | - | 840 | 21.2 |
26696 | 700 | 21.2 | 3500 | - | 875 | 21.2 |
26697 | 700 | 21.2 | 3500 | - | 910 | 21.2 |
26698 | 700 | 21.2 | 3500 | - | 945 | 21.2 |
26699 | 700 | 21.2 | 3500 | - | 980 | 21.2 |
26700 | 700 | 21.2 | 3500 | - | 1015 | 21.2 |
26454 | 900 | 23.2 | 4500 | 1.0 | 2160 | 21.2 |
26455 | 900 | 23.2 | 4500 | 1.0 | 2205 | 21.2 |
26825 | 650 | 21.1 | 3250 | - | 2336 | 21.1 |
26826 | 650 | 21.1 | 3250 | - | 2368 | 21.1 |
26584 | 800 | 23.3 | 4000 | 1.1 | 2240 | 21.0 |
26831 | 650 | 21.0 | 3250 | - | 2528 | 21.0 |
26203 | 1150 | 29.6 | 5750 | 4.5 | 2109 | 20.6 |
26657 | 750 | 22.9 | 3750 | 1.2 | 2257 | 20.5 |
26658 | 750 | 22.9 | 3750 | 1.2 | 2294 | 20.5 |
26833 | 650 | 20.2 | 3250 | - | 2592 | 20.2 |
26834 | 650 | 20.2 | 3250 | - | 2624 | 20.2 |
26835 | 650 | 20.2 | 3250 | - | 2656 | 20.2 |
26836 | 650 | 20.2 | 3250 | - | 2688 | 20.2 |
26837 | 650 | 20.2 | 3250 | - | 2720 | 20.2 |
26838 | 650 | 20.2 | 3250 | - | 2752 | 20.2 |
26839 | 650 | 20.2 | 3250 | - | 2784 | 20.2 |
26840 | 650 | 20.2 | 3250 | - | 2816 | 20.2 |
26841 | 650 | 20.2 | 3250 | 0.2 | 2848 | 19.9 |
26922 | 600 | 19.9 | 3000 | - | 2400 | 19.9 |
26923 | 600 | 19.9 | 3000 | - | 2430 | 19.9 |
26924 | 600 | 19.9 | 3000 | - | 2460 | 19.9 |
26925 | 600 | 19.9 | 3000 | - | 2490 | 19.9 |
26926 | 600 | 19.9 | 3000 | - | 2520 | 19.9 |
26927 | 600 | 19.9 | 3000 | - | 2550 | 19.9 |
26516 | 850 | 21.9 | 4250 | 1.1 | 2184 | 19.8 |
26517 | 850 | 21.9 | 4250 | 1.1 | 2226 | 19.8 |
26779 | 650 | 19.7 | 3250 | - | 864 | 19.7 |
26780 | 650 | 19.7 | 3250 | - | 896 | 19.7 |
26781 | 650 | 19.7 | 3250 | - | 928 | 19.7 |
26782 | 650 | 19.7 | 3250 | - | 960 | 19.7 |
26783 | 650 | 19.7 | 3250 | - | 992 | 19.7 |
26784 | 650 | 19.7 | 3250 | - | 1024 | 19.7 |
26785 | 650 | 19.7 | 3250 | - | 1056 | 19.7 |
26920 | 600 | 19.5 | 3000 | - | 2340 | 19.5 |
26921 | 600 | 19.5 | 3000 | - | 2370 | 19.5 |
26928 | 600 | 19.4 | 3000 | - | 2580 | 19.4 |
26736 | 700 | 21.3 | 3500 | 1.3 | 2275 | 18.8 |
26832 | 650 | 18.7 | 3250 | - | 2560 | 18.7 |
26930 | 600 | 18.6 | 3000 | - | 2640 | 18.6 |
26931 | 600 | 18.6 | 3000 | - | 2670 | 18.6 |
26932 | 600 | 18.6 | 3000 | - | 2700 | 18.6 |
26933 | 600 | 18.6 | 3000 | - | 2730 | 18.6 |
26934 | 600 | 18.6 | 3000 | - | 2760 | 18.6 |
26935 | 600 | 18.6 | 3000 | - | 2790 | 18.6 |
26936 | 600 | 18.6 | 3000 | - | 2820 | 18.6 |
26937 | 600 | 18.6 | 3000 | - | 2850 | 18.6 |
26938 | 600 | 18.6 | 3000 | - | 2880 | 18.6 |
26582 | 800 | 20.6 | 4000 | 1.1 | 2160 | 18.4 |
26583 | 800 | 20.6 | 4000 | 1.1 | 2200 | 18.4 |
26824 | 650 | 21.1 | 3250 | 1.4 | 2304 | 18.3 |
27027 | 550 | 18.2 | 2750 | - | 2376 | 18.2 |
27028 | 550 | 18.2 | 2750 | - | 2403 | 18.2 |
27029 | 550 | 18.2 | 2750 | - | 2430 | 18.2 |
27030 | 550 | 18.2 | 2750 | - | 2457 | 18.2 |
27031 | 550 | 18.2 | 2750 | - | 2484 | 18.2 |
27032 | 550 | 18.2 | 2750 | - | 2511 | 18.2 |
27033 | 550 | 18.2 | 2750 | - | 2538 | 18.2 |
27034 | 550 | 18.2 | 2750 | - | 2565 | 18.2 |
27035 | 550 | 18.2 | 2750 | - | 2592 | 18.2 |
26870 | 600 | 18.2 | 3000 | - | 840 | 18.2 |
26871 | 600 | 18.2 | 3000 | - | 870 | 18.2 |
26872 | 600 | 18.2 | 3000 | - | 900 | 18.2 |
26873 | 600 | 18.2 | 3000 | - | 930 | 18.2 |
26874 | 600 | 18.2 | 3000 | - | 960 | 18.2 |
26875 | 600 | 18.2 | 3000 | - | 990 | 18.2 |
26876 | 600 | 18.2 | 3000 | - | 1020 | 18.2 |
26877 | 600 | 18.2 | 3000 | - | 1050 | 18.2 |
26878 | 600 | 18.2 | 3000 | - | 1080 | 18.2 |
26879 | 600 | 18.2 | 3000 | - | 1110 | 18.2 |
27025 | 550 | 17.9 | 2750 | - | 2322 | 17.9 |
27026 | 550 | 17.9 | 2750 | - | 2349 | 17.9 |
26919 | 600 | 19.5 | 3000 | 0.8 | 2310 | 17.8 |
26735 | 700 | 20.3 | 3500 | 1.3 | 2240 | 17.8 |
27036 | 550 | 17.7 | 2750 | - | 2619 | 17.7 |
27037 | 550 | 17.7 | 2750 | - | 2646 | 17.7 |
26623 | 750 | 22.7 | 3750 | 2.5 | 999 | 17.7 |
26515 | 850 | 21.9 | 4250 | 2.2 | 2142 | 17.4 |
26929 | 600 | 17.2 | 3000 | - | 2610 | 17.2 |
26778 | 650 | 19.7 | 3250 | 1.2 | 832 | 17.2 |
26786 | 650 | 19.7 | 3250 | 1.2 | 1088 | 17.2 |
27038 | 550 | 17.1 | 2750 | - | 2673 | 17.1 |
27039 | 550 | 17.1 | 2750 | - | 2700 | 17.1 |
27040 | 550 | 17.1 | 2750 | - | 2727 | 17.1 |
27041 | 550 | 17.1 | 2750 | - | 2754 | 17.1 |
27042 | 550 | 17.1 | 2750 | - | 2781 | 17.1 |
27043 | 550 | 17.1 | 2750 | - | 2808 | 17.1 |
27044 | 550 | 17.1 | 2750 | - | 2835 | 17.1 |
27045 | 550 | 17.1 | 2750 | - | 2862 | 17.1 |
27046 | 550 | 17.1 | 2750 | - | 2889 | 17.1 |
27047 | 550 | 17.1 | 2750 | - | 2916 | 17.1 |
27048 | 550 | 17.1 | 2750 | - | 2943 | 17.1 |
26823 | 650 | 19.8 | 3250 | 1.4 | 2272 | 17.0 |
26655 | 750 | 19.3 | 3750 | 1.2 | 2183 | 16.9 |
26656 | 750 | 19.3 | 3750 | 1.2 | 2220 | 16.9 |
26552 | 800 | 24.2 | 4000 | 3.8 | 960 | 16.7 |
26971 | 550 | 16.7 | 2750 | - | 864 | 16.7 |
26972 | 550 | 16.7 | 2750 | - | 891 | 16.7 |
26973 | 550 | 16.7 | 2750 | - | 918 | 16.7 |
26974 | 550 | 16.7 | 2750 | - | 945 | 16.7 |
26975 | 550 | 16.7 | 2750 | - | 972 | 16.7 |
26976 | 550 | 16.7 | 2750 | - | 999 | 16.7 |
26977 | 550 | 16.7 | 2750 | - | 1026 | 16.7 |
26978 | 550 | 16.7 | 2750 | - | 1053 | 16.7 |
26979 | 550 | 16.7 | 2750 | - | 1080 | 16.7 |
26980 | 550 | 16.7 | 2750 | - | 1107 | 16.7 |
26981 | 550 | 16.7 | 2750 | - | 1134 | 16.7 |
26982 | 550 | 16.7 | 2750 | - | 1161 | 16.7 |
27144 | 500 | 16.6 | 2500 | - | 2375 | 16.6 |
27145 | 500 | 16.6 | 2500 | - | 2400 | 16.6 |
27146 | 500 | 16.6 | 2500 | - | 2425 | 16.6 |
27147 | 500 | 16.6 | 2500 | - | 2450 | 16.6 |
27148 | 500 | 16.6 | 2500 | - | 2475 | 16.6 |
27149 | 500 | 16.6 | 2500 | - | 2500 | 16.6 |
27150 | 500 | 16.6 | 2500 | - | 2525 | 16.6 |
27151 | 500 | 16.6 | 2500 | - | 2550 | 16.6 |
27152 | 500 | 16.6 | 2500 | - | 2575 | 16.6 |
27153 | 500 | 16.6 | 2500 | - | 2600 | 16.6 |
27154 | 500 | 16.6 | 2500 | - | 2625 | 16.6 |
27155 | 500 | 16.6 | 2500 | - | 2650 | 16.6 |
27142 | 500 | 16.2 | 2500 | - | 2325 | 16.2 |
27143 | 500 | 16.2 | 2500 | - | 2350 | 16.2 |
26424 | 900 | 22.4 | 4500 | 3.1 | 810 | 16.2 |
27156 | 500 | 16.1 | 2500 | - | 2675 | 16.1 |
27157 | 500 | 16.1 | 2500 | - | 2700 | 16.1 |
26822 | 650 | 18.9 | 3250 | 1.4 | 2240 | 16.1 |
26970 | 550 | 16.7 | 2750 | 0.5 | 837 | 15.6 |
27158 | 500 | 15.5 | 2500 | - | 2725 | 15.5 |
27159 | 500 | 15.5 | 2500 | - | 2750 | 15.5 |
27160 | 500 | 15.5 | 2500 | - | 2775 | 15.5 |
27161 | 500 | 15.5 | 2500 | - | 2800 | 15.5 |
27162 | 500 | 15.5 | 2500 | - | 2825 | 15.5 |
27163 | 500 | 15.5 | 2500 | - | 2850 | 15.5 |
27164 | 500 | 15.5 | 2500 | - | 2875 | 15.5 |
27165 | 500 | 15.5 | 2500 | - | 2900 | 15.5 |
27166 | 500 | 15.5 | 2500 | - | 2925 | 15.5 |
27167 | 500 | 15.5 | 2500 | - | 2950 | 15.5 |
27168 | 500 | 15.5 | 2500 | - | 2975 | 15.5 |
26733 | 700 | 18.0 | 3500 | 1.3 | 2170 | 15.5 |
26734 | 700 | 18.0 | 3500 | 1.3 | 2205 | 15.5 |
26654 | 750 | 19.3 | 3750 | 2.0 | 2146 | 15.3 |
26917 | 600 | 18.3 | 3000 | 1.5 | 2250 | 15.3 |
26918 | 600 | 18.3 | 3000 | 1.5 | 2280 | 15.3 |
27083 | 500 | 15.2 | 2500 | - | 850 | 15.2 |
27084 | 500 | 15.2 | 2500 | - | 875 | 15.2 |
27085 | 500 | 15.2 | 2500 | - | 900 | 15.2 |
27086 | 500 | 15.2 | 2500 | - | 925 | 15.2 |
27087 | 500 | 15.2 | 2500 | - | 950 | 15.2 |
27088 | 500 | 15.2 | 2500 | - | 975 | 15.2 |
27089 | 500 | 15.2 | 2500 | - | 1000 | 15.2 |
27090 | 500 | 15.2 | 2500 | - | 1025 | 15.2 |
27091 | 500 | 15.2 | 2500 | - | 1050 | 15.2 |
27092 | 500 | 15.2 | 2500 | - | 1075 | 15.2 |
27093 | 500 | 15.2 | 2500 | - | 1100 | 15.2 |
27094 | 500 | 15.2 | 2500 | - | 1125 | 15.2 |
27095 | 500 | 15.2 | 2500 | - | 1150 | 15.2 |
27096 | 500 | 15.2 | 2500 | - | 1175 | 15.2 |
26880 | 600 | 18.2 | 3000 | 1.7 | 1140 | 14.8 |
26396 | 950 | 24.5 | 4750 | 4.8 | 2115 | 14.8 |
26820 | 650 | 16.8 | 3250 | 1.4 | 2176 | 14.0 |
26821 | 650 | 16.8 | 3250 | 1.4 | 2208 | 14.0 |
27023 | 550 | 16.8 | 2750 | 1.6 | 2268 | 13.5 |
27024 | 550 | 16.8 | 2750 | 1.6 | 2295 | 13.5 |
27022 | 550 | 16.3 | 2750 | 1.6 | 2241 | 13.0 |
27141 | 500 | 16.2 | 2500 | 1.8 | 2300 | 12.6 |
26914 | 600 | 15.5 | 3000 | 1.5 | 2160 | 12.5 |
26915 | 600 | 15.5 | 3000 | 1.5 | 2190 | 12.5 |
26916 | 600 | 15.5 | 3000 | 1.5 | 2220 | 12.5 |
26483 | 850 | 21.1 | 4250 | 4.7 | 798 | 11.7 |
27139 | 500 | 15.2 | 2500 | 1.8 | 2250 | 11.6 |
27140 | 500 | 15.2 | 2500 | 1.8 | 2275 | 11.6 |
26819 | 650 | 16.8 | 3250 | 2.6 | 2144 | 11.5 |
27019 | 550 | 14.2 | 2750 | 1.6 | 2160 | 10.9 |
27020 | 550 | 14.2 | 2750 | 1.6 | 2187 | 10.9 |
27021 | 550 | 14.2 | 2750 | 1.6 | 2214 | 10.9 |
26732 | 700 | 18.0 | 3500 | 3.7 | 2135 | 10.6 |
27136 | 500 | 12.9 | 2500 | 1.8 | 2175 | 9.3 |
27137 | 500 | 12.9 | 2500 | 1.8 | 2200 | 9.3 |
27138 | 500 | 12.9 | 2500 | 1.8 | 2225 | 9.3 |
27082 | 500 | 15.2 | 2500 | 3.0 | 825 | 9.2 |
27135 | 500 | 12.9 | 2500 | 2.2 | 2150 | 8.5 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
26165 | 1200 | 36.6 | 6000 | 0.8 | 2280 | 35.1 |
26751 | 700 | 21.7 | 3500 | 0.4 | 2800 | 20.9 |
26701 | 700 | 21.2 | 3500 | 2.9 | 1050 | 15.5 |
27169 | 500 | 15.5 | 2500 | 0.6 | 3000 | 14.3 |
26618 | 750 | 18.7 | 3750 | 3.2 | 814 | 12.3 |
26548 | 800 | 19.9 | 4000 | 4.8 | 800 | 10.4 |
26694 | 700 | 17.4 | 3500 | 4.7 | 805 | 8.0 |
26869 | 600 | 14.9 | 3000 | 4.7 | 810 | 5.6 |
Overall score = score_ratio - 2 * repetitive DNA content