Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign46 - back to list
Summary
./analyse_probe_search_results : Wed Sep 21 13:53:25 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign46 assembly : NCBIM34 bias : 5prime chromosome : 8 id : 28 strand : 1 ------------- Design window length: 2473bp All jobs for probe design are successful - total: 35 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 686 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 5prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 686/686 Putative probes exceeding selection criteria: 294/686 PASSED (GREEN) AND FAILED PUTATIVE PROBES IN THE DESIGN WINDOW --------------------------------------------------------------
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
No probes
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
29908 | 1300 | 38.7 | 6500 | 1.5 | 1105 | 35.6 |
29929 | 1250 | 37.2 | 6250 | 1.6 | 1178 | 34.0 |
29951 | 1200 | 35.7 | 6000 | 1.9 | 1260 | 31.9 |
29909 | 1300 | 36.9 | 6500 | 2.5 | 1170 | 31.9 |
29948 | 1200 | 35.7 | 6000 | 2.8 | 1080 | 30.2 |
29996 | 1100 | 33.7 | 5500 | 1.8 | 1100 | 30.1 |
29971 | 1150 | 35.3 | 5750 | 2.6 | 1083 | 30.1 |
29975 | 1150 | 34.2 | 5750 | 2.1 | 1311 | 30.1 |
30000 | 1100 | 32.7 | 5500 | 1.8 | 1320 | 29.1 |
30091 | 950 | 28.3 | 4750 | - | 1504 | 28.3 |
30022 | 1050 | 32.2 | 5250 | 2.0 | 1092 | 28.2 |
30028 | 1050 | 31.2 | 5250 | 1.9 | 1404 | 27.4 |
30126 | 900 | 26.8 | 4500 | - | 1530 | 26.8 |
30051 | 1000 | 30.7 | 5000 | 2.0 | 1100 | 26.7 |
30058 | 1000 | 29.8 | 5000 | 2.0 | 1450 | 25.8 |
30163 | 850 | 25.3 | 4250 | - | 1512 | 25.3 |
30164 | 850 | 25.3 | 4250 | - | 1554 | 25.3 |
30165 | 850 | 25.3 | 4250 | - | 1596 | 25.3 |
30090 | 950 | 28.3 | 4750 | 2.1 | 1457 | 24.1 |
30204 | 800 | 23.8 | 4000 | - | 1520 | 23.8 |
30205 | 800 | 23.8 | 4000 | - | 1560 | 23.8 |
30206 | 800 | 23.8 | 4000 | - | 1600 | 23.8 |
30207 | 800 | 23.8 | 4000 | - | 1640 | 23.8 |
30059 | 950 | 22.6 | 4750 | - | 0 | 22.6 |
30082 | 950 | 29.1 | 4750 | 3.4 | 1081 | 22.4 |
30249 | 750 | 22.3 | 3750 | - | 1517 | 22.3 |
30250 | 750 | 22.3 | 3750 | - | 1554 | 22.3 |
30251 | 750 | 22.3 | 3750 | - | 1591 | 22.3 |
30252 | 750 | 22.3 | 3750 | - | 1628 | 22.3 |
30253 | 750 | 22.3 | 3750 | - | 1665 | 22.3 |
30254 | 750 | 22.3 | 3750 | - | 1702 | 22.3 |
30092 | 900 | 21.4 | 4500 | - | 0 | 21.4 |
30093 | 900 | 21.4 | 4500 | - | 45 | 21.4 |
30153 | 850 | 26.1 | 4250 | 2.5 | 1092 | 21.1 |
30299 | 700 | 21.0 | 3500 | - | 1540 | 21.0 |
30300 | 700 | 20.8 | 3500 | - | 1575 | 20.8 |
30301 | 700 | 20.8 | 3500 | - | 1610 | 20.8 |
30302 | 700 | 20.8 | 3500 | - | 1645 | 20.8 |
30303 | 700 | 20.8 | 3500 | - | 1680 | 20.8 |
30304 | 700 | 20.8 | 3500 | - | 1715 | 20.8 |
30305 | 700 | 20.8 | 3500 | - | 1750 | 20.8 |
30116 | 900 | 27.6 | 4500 | 3.7 | 1080 | 20.3 |
30127 | 850 | 20.2 | 4250 | - | 0 | 20.2 |
30128 | 850 | 20.2 | 4250 | - | 42 | 20.2 |
30129 | 850 | 20.2 | 4250 | - | 84 | 20.2 |
30130 | 850 | 20.2 | 4250 | - | 126 | 20.2 |
30306 | 650 | 19.7 | 3250 | - | 0 | 19.7 |
30029 | 1000 | 23.8 | 5000 | 2.2 | 0 | 19.4 |
30356 | 650 | 19.3 | 3250 | - | 1600 | 19.3 |
30357 | 650 | 19.3 | 3250 | - | 1632 | 19.3 |
30358 | 650 | 19.3 | 3250 | - | 1664 | 19.3 |
30359 | 650 | 19.3 | 3250 | - | 1696 | 19.3 |
30360 | 650 | 19.3 | 3250 | - | 1728 | 19.3 |
30361 | 650 | 19.3 | 3250 | - | 1760 | 19.3 |
30362 | 650 | 19.3 | 3250 | - | 1792 | 19.3 |
30166 | 800 | 19.0 | 4000 | - | 0 | 19.0 |
30167 | 800 | 19.0 | 4000 | - | 40 | 19.0 |
30168 | 800 | 19.0 | 4000 | - | 80 | 19.0 |
30169 | 800 | 19.0 | 4000 | - | 120 | 19.0 |
30170 | 800 | 19.0 | 4000 | - | 160 | 19.0 |
29927 | 1250 | 28.4 | 6250 | 4.7 | 1054 | 19.0 |
30094 | 900 | 21.4 | 4500 | 1.3 | 90 | 18.8 |
30060 | 950 | 22.6 | 4750 | 2.0 | 47 | 18.6 |
30255 | 700 | 17.9 | 3500 | - | 0 | 17.9 |
30208 | 750 | 17.9 | 3750 | - | 0 | 17.9 |
30209 | 750 | 17.9 | 3750 | - | 37 | 17.9 |
30210 | 750 | 17.9 | 3750 | - | 74 | 17.9 |
30211 | 750 | 17.9 | 3750 | - | 111 | 17.9 |
30212 | 750 | 17.9 | 3750 | - | 148 | 17.9 |
30213 | 750 | 17.9 | 3750 | - | 185 | 17.9 |
30214 | 750 | 17.9 | 3750 | - | 222 | 17.9 |
30418 | 600 | 17.9 | 3000 | - | 1650 | 17.9 |
30419 | 600 | 17.9 | 3000 | - | 1680 | 17.9 |
30420 | 600 | 17.9 | 3000 | - | 1710 | 17.9 |
30421 | 600 | 17.9 | 3000 | - | 1740 | 17.9 |
30422 | 600 | 17.9 | 3000 | - | 1770 | 17.9 |
30423 | 600 | 17.9 | 3000 | - | 1800 | 17.9 |
30424 | 600 | 17.9 | 3000 | - | 1830 | 17.9 |
30307 | 650 | 16.9 | 3250 | - | 32 | 16.9 |
30425 | 600 | 17.9 | 3000 | 0.5 | 1860 | 16.9 |
30256 | 700 | 16.7 | 3500 | - | 35 | 16.7 |
30257 | 700 | 16.7 | 3500 | - | 70 | 16.7 |
30258 | 700 | 16.7 | 3500 | - | 105 | 16.7 |
30259 | 700 | 16.7 | 3500 | - | 140 | 16.7 |
30260 | 700 | 16.7 | 3500 | - | 175 | 16.7 |
30261 | 700 | 16.7 | 3500 | - | 210 | 16.7 |
30262 | 700 | 16.7 | 3500 | - | 245 | 16.7 |
30365 | 600 | 16.4 | 3000 | - | 60 | 16.4 |
30489 | 550 | 16.4 | 2750 | - | 1701 | 16.4 |
30490 | 550 | 16.4 | 2750 | - | 1728 | 16.4 |
30491 | 550 | 16.4 | 2750 | - | 1755 | 16.4 |
30492 | 550 | 16.4 | 2750 | - | 1782 | 16.4 |
30493 | 550 | 16.4 | 2750 | - | 1809 | 16.4 |
30494 | 550 | 16.4 | 2750 | - | 1836 | 16.4 |
30495 | 550 | 16.4 | 2750 | - | 1863 | 16.4 |
30496 | 550 | 16.4 | 2750 | - | 1890 | 16.4 |
30193 | 800 | 24.5 | 4000 | 4.1 | 1080 | 16.3 |
30263 | 700 | 16.7 | 3500 | 0.3 | 280 | 16.1 |
30366 | 600 | 15.5 | 3000 | - | 90 | 15.5 |
30308 | 650 | 15.5 | 3250 | - | 64 | 15.5 |
30309 | 650 | 15.5 | 3250 | - | 96 | 15.5 |
30310 | 650 | 15.5 | 3250 | - | 128 | 15.5 |
30311 | 650 | 15.5 | 3250 | - | 160 | 15.5 |
30312 | 650 | 15.5 | 3250 | - | 192 | 15.5 |
30313 | 650 | 15.5 | 3250 | - | 224 | 15.5 |
30314 | 650 | 15.5 | 3250 | - | 256 | 15.5 |
30315 | 650 | 15.5 | 3250 | - | 288 | 15.5 |
30316 | 650 | 15.5 | 3250 | - | 320 | 15.5 |
30504 | 500 | 15.2 | 2500 | - | 150 | 15.2 |
30430 | 550 | 15.0 | 2750 | - | 108 | 15.0 |
30568 | 500 | 14.9 | 2500 | - | 1750 | 14.9 |
30569 | 500 | 14.9 | 2500 | - | 1775 | 14.9 |
30570 | 500 | 14.9 | 2500 | - | 1800 | 14.9 |
30571 | 500 | 14.9 | 2500 | - | 1825 | 14.9 |
30572 | 500 | 14.9 | 2500 | - | 1850 | 14.9 |
30573 | 500 | 14.9 | 2500 | - | 1875 | 14.9 |
30574 | 500 | 14.9 | 2500 | - | 1900 | 14.9 |
30575 | 500 | 14.9 | 2500 | - | 1925 | 14.9 |
30576 | 500 | 14.9 | 2500 | - | 1950 | 14.9 |
30367 | 600 | 14.3 | 3000 | - | 120 | 14.3 |
30368 | 600 | 14.3 | 3000 | - | 150 | 14.3 |
30369 | 600 | 14.3 | 3000 | - | 180 | 14.3 |
30370 | 600 | 14.3 | 3000 | - | 210 | 14.3 |
30371 | 600 | 14.3 | 3000 | - | 240 | 14.3 |
30372 | 600 | 14.3 | 3000 | - | 270 | 14.3 |
30373 | 600 | 14.3 | 3000 | - | 300 | 14.3 |
30374 | 600 | 14.3 | 3000 | - | 330 | 14.3 |
30375 | 600 | 14.3 | 3000 | - | 360 | 14.3 |
30431 | 550 | 14.2 | 2750 | - | 135 | 14.2 |
30505 | 500 | 13.6 | 2500 | - | 175 | 13.6 |
30286 | 700 | 21.5 | 3500 | 4.0 | 1085 | 13.5 |
30432 | 550 | 13.1 | 2750 | - | 162 | 13.1 |
30433 | 550 | 13.1 | 2750 | - | 189 | 13.1 |
30434 | 550 | 13.1 | 2750 | - | 216 | 13.1 |
30435 | 550 | 13.1 | 2750 | - | 243 | 13.1 |
30436 | 550 | 13.1 | 2750 | - | 270 | 13.1 |
30437 | 550 | 13.1 | 2750 | - | 297 | 13.1 |
30438 | 550 | 13.1 | 2750 | - | 324 | 13.1 |
30439 | 550 | 13.1 | 2750 | - | 351 | 13.1 |
30440 | 550 | 13.1 | 2750 | - | 378 | 13.1 |
30441 | 550 | 13.1 | 2750 | - | 405 | 13.1 |
30506 | 500 | 12.8 | 2500 | - | 200 | 12.8 |
30497 | 550 | 16.4 | 2750 | 1.8 | 1917 | 12.7 |
30340 | 650 | 19.9 | 3250 | 3.8 | 1088 | 12.2 |
30507 | 500 | 11.9 | 2500 | - | 225 | 11.9 |
30508 | 500 | 11.9 | 2500 | - | 250 | 11.9 |
30509 | 500 | 11.9 | 2500 | - | 275 | 11.9 |
30510 | 500 | 11.9 | 2500 | - | 300 | 11.9 |
30511 | 500 | 11.9 | 2500 | - | 325 | 11.9 |
30512 | 500 | 11.9 | 2500 | - | 350 | 11.9 |
30513 | 500 | 11.9 | 2500 | - | 375 | 11.9 |
30514 | 500 | 11.9 | 2500 | - | 400 | 11.9 |
30515 | 500 | 11.9 | 2500 | - | 425 | 11.9 |
30516 | 500 | 11.9 | 2500 | - | 450 | 11.9 |
30517 | 500 | 11.9 | 2500 | - | 475 | 11.9 |
30442 | 550 | 13.1 | 2750 | 0.7 | 432 | 11.6 |
30376 | 600 | 14.3 | 3000 | 2.0 | 390 | 10.3 |
30131 | 850 | 19.1 | 4250 | 4.7 | 168 | 9.6 |
30215 | 750 | 17.9 | 3750 | 4.1 | 259 | 9.6 |
30317 | 650 | 15.5 | 3250 | 3.7 | 352 | 8.1 |
30542 | 500 | 15.3 | 2500 | 4.0 | 1100 | 7.3 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
29928 | 1250 | 37.2 | 6250 | 1.6 | 1116 | 34.0 |
29949 | 1200 | 35.7 | 6000 | 1.7 | 1140 | 32.4 |
29950 | 1200 | 35.7 | 6000 | 1.7 | 1200 | 32.4 |
29972 | 1150 | 34.2 | 5750 | 1.7 | 1140 | 30.7 |
29973 | 1150 | 34.2 | 5750 | 1.7 | 1197 | 30.7 |
29974 | 1150 | 34.2 | 5750 | 1.7 | 1254 | 30.7 |
29997 | 1100 | 32.7 | 5500 | 1.8 | 1155 | 29.1 |
29998 | 1100 | 32.7 | 5500 | 1.8 | 1210 | 29.1 |
29999 | 1100 | 32.7 | 5500 | 1.8 | 1265 | 29.1 |
30023 | 1050 | 32.2 | 5250 | 1.9 | 1144 | 28.4 |
30024 | 1050 | 31.2 | 5250 | 1.9 | 1196 | 27.4 |
30025 | 1050 | 31.2 | 5250 | 1.9 | 1248 | 27.4 |
30026 | 1050 | 31.2 | 5250 | 1.9 | 1300 | 27.4 |
30027 | 1050 | 31.2 | 5250 | 1.9 | 1352 | 27.4 |
30052 | 1000 | 30.7 | 5000 | 2.0 | 1150 | 26.7 |
30053 | 1000 | 30.7 | 5000 | 2.0 | 1200 | 26.7 |
30054 | 1000 | 29.8 | 5000 | 2.0 | 1250 | 25.8 |
30055 | 1000 | 29.8 | 5000 | 2.0 | 1300 | 25.8 |
30056 | 1000 | 29.8 | 5000 | 2.0 | 1350 | 25.8 |
30057 | 1000 | 29.8 | 5000 | 2.0 | 1400 | 25.8 |
30083 | 950 | 29.1 | 4750 | 2.1 | 1128 | 24.9 |
30084 | 950 | 29.1 | 4750 | 2.1 | 1175 | 24.9 |
30085 | 950 | 29.1 | 4750 | 2.1 | 1222 | 24.9 |
30086 | 950 | 29.1 | 4750 | 2.1 | 1269 | 24.9 |
30121 | 900 | 28.7 | 4500 | 2.2 | 1305 | 24.2 |
30087 | 950 | 28.3 | 4750 | 2.1 | 1316 | 24.1 |
30088 | 950 | 28.3 | 4750 | 2.1 | 1363 | 24.1 |
30089 | 950 | 28.3 | 4750 | 2.1 | 1410 | 24.1 |
30117 | 900 | 27.6 | 4500 | 2.2 | 1125 | 23.2 |
30118 | 900 | 27.6 | 4500 | 2.2 | 1170 | 23.2 |
30119 | 900 | 27.6 | 4500 | 2.2 | 1215 | 23.2 |
30120 | 900 | 27.6 | 4500 | 2.2 | 1260 | 23.2 |
30125 | 900 | 26.8 | 4500 | 2.0 | 1485 | 22.8 |
30158 | 850 | 27.1 | 4250 | 2.4 | 1302 | 22.4 |
30159 | 850 | 27.1 | 4250 | 2.4 | 1344 | 22.4 |
30122 | 900 | 26.8 | 4500 | 2.2 | 1350 | 22.3 |
30123 | 900 | 26.8 | 4500 | 2.2 | 1395 | 22.3 |
30124 | 900 | 26.8 | 4500 | 2.2 | 1440 | 22.3 |
30160 | 850 | 26.4 | 4250 | 2.4 | 1386 | 21.7 |
30154 | 850 | 26.1 | 4250 | 2.4 | 1134 | 21.4 |
30155 | 850 | 26.1 | 4250 | 2.4 | 1176 | 21.4 |
30156 | 850 | 26.1 | 4250 | 2.4 | 1218 | 21.4 |
30157 | 850 | 26.1 | 4250 | 2.4 | 1260 | 21.4 |
30161 | 850 | 25.3 | 4250 | 2.4 | 1428 | 20.6 |
30162 | 850 | 25.3 | 4250 | 2.4 | 1470 | 20.6 |
30199 | 800 | 25.5 | 4000 | 2.5 | 1320 | 20.5 |
30200 | 800 | 25.5 | 4000 | 2.5 | 1360 | 20.5 |
30201 | 800 | 25.5 | 4000 | 2.5 | 1400 | 20.5 |
30194 | 800 | 24.5 | 4000 | 2.5 | 1120 | 19.5 |
30195 | 800 | 24.5 | 4000 | 2.5 | 1160 | 19.5 |
30196 | 800 | 24.5 | 4000 | 2.5 | 1200 | 19.5 |
30197 | 800 | 24.5 | 4000 | 2.5 | 1240 | 19.5 |
30198 | 800 | 24.5 | 4000 | 2.5 | 1280 | 19.5 |
30202 | 800 | 24.0 | 4000 | 2.5 | 1440 | 19.0 |
30248 | 750 | 24.2 | 3750 | 2.7 | 1480 | 18.9 |
30203 | 800 | 23.8 | 4000 | 2.5 | 1480 | 18.8 |
30244 | 750 | 23.9 | 3750 | 2.7 | 1332 | 18.6 |
30245 | 750 | 23.9 | 3750 | 2.7 | 1369 | 18.6 |
30246 | 750 | 23.9 | 3750 | 2.7 | 1406 | 18.6 |
30247 | 750 | 23.9 | 3750 | 2.7 | 1443 | 18.6 |
30238 | 750 | 23.0 | 3750 | 2.7 | 1110 | 17.7 |
30239 | 750 | 23.0 | 3750 | 2.7 | 1147 | 17.7 |
30240 | 750 | 23.0 | 3750 | 2.7 | 1184 | 17.7 |
30241 | 750 | 23.0 | 3750 | 2.7 | 1221 | 17.7 |
30242 | 750 | 23.0 | 3750 | 2.7 | 1258 | 17.7 |
30243 | 750 | 23.0 | 3750 | 2.7 | 1295 | 17.7 |
30297 | 700 | 22.6 | 3500 | 2.9 | 1470 | 16.9 |
30293 | 700 | 22.3 | 3500 | 2.9 | 1330 | 16.6 |
30294 | 700 | 22.3 | 3500 | 2.9 | 1365 | 16.6 |
30295 | 700 | 22.3 | 3500 | 2.9 | 1400 | 16.6 |
30296 | 700 | 22.3 | 3500 | 2.9 | 1435 | 16.6 |
30287 | 700 | 21.5 | 3500 | 2.9 | 1120 | 15.8 |
30288 | 700 | 21.5 | 3500 | 2.9 | 1155 | 15.8 |
30289 | 700 | 21.5 | 3500 | 2.9 | 1190 | 15.8 |
30290 | 700 | 21.5 | 3500 | 2.9 | 1225 | 15.8 |
30291 | 700 | 21.5 | 3500 | 2.9 | 1260 | 15.8 |
30292 | 700 | 21.5 | 3500 | 2.9 | 1295 | 15.8 |
30352 | 650 | 21.0 | 3250 | 3.1 | 1472 | 14.8 |
30347 | 650 | 20.7 | 3250 | 3.1 | 1312 | 14.5 |
30348 | 650 | 20.7 | 3250 | 3.1 | 1344 | 14.5 |
30349 | 650 | 20.7 | 3250 | 3.1 | 1376 | 14.5 |
30350 | 650 | 20.7 | 3250 | 3.1 | 1408 | 14.5 |
30351 | 650 | 20.7 | 3250 | 3.1 | 1440 | 14.5 |
30341 | 650 | 19.9 | 3250 | 3.1 | 1120 | 13.8 |
30342 | 650 | 19.9 | 3250 | 3.1 | 1152 | 13.8 |
30343 | 650 | 19.9 | 3250 | 3.1 | 1184 | 13.8 |
30344 | 650 | 19.9 | 3250 | 3.1 | 1216 | 13.8 |
30345 | 650 | 19.9 | 3250 | 3.1 | 1248 | 13.8 |
30346 | 650 | 19.9 | 3250 | 3.1 | 1280 | 13.8 |
30171 | 800 | 19.0 | 4000 | 2.8 | 200 | 13.5 |
30412 | 600 | 19.4 | 3000 | 3.3 | 1470 | 12.7 |
30407 | 600 | 19.1 | 3000 | 3.3 | 1320 | 12.4 |
30408 | 600 | 19.1 | 3000 | 3.3 | 1350 | 12.4 |
30409 | 600 | 19.1 | 3000 | 3.3 | 1380 | 12.4 |
30410 | 600 | 19.1 | 3000 | 3.3 | 1410 | 12.4 |
30411 | 600 | 19.1 | 3000 | 3.3 | 1440 | 12.4 |
30400 | 600 | 18.4 | 3000 | 3.3 | 1110 | 11.7 |
30401 | 600 | 18.4 | 3000 | 3.3 | 1140 | 11.7 |
30402 | 600 | 18.4 | 3000 | 3.3 | 1170 | 11.7 |
30403 | 600 | 18.4 | 3000 | 3.3 | 1200 | 11.7 |
30404 | 600 | 18.4 | 3000 | 3.3 | 1230 | 11.7 |
30405 | 600 | 18.4 | 3000 | 3.3 | 1260 | 11.7 |
30406 | 600 | 18.4 | 3000 | 3.3 | 1290 | 11.7 |
30475 | 550 | 17.5 | 2750 | 3.6 | 1323 | 10.2 |
30476 | 550 | 17.5 | 2750 | 3.6 | 1350 | 10.2 |
30477 | 550 | 17.5 | 2750 | 3.6 | 1377 | 10.2 |
30478 | 550 | 17.5 | 2750 | 3.6 | 1404 | 10.2 |
30479 | 550 | 17.5 | 2750 | 3.6 | 1431 | 10.2 |
30480 | 550 | 17.5 | 2750 | 3.6 | 1458 | 10.2 |
30467 | 550 | 16.9 | 2750 | 3.6 | 1107 | 9.6 |
30468 | 550 | 16.9 | 2750 | 3.6 | 1134 | 9.6 |
30469 | 550 | 16.9 | 2750 | 3.6 | 1161 | 9.6 |
30470 | 550 | 16.9 | 2750 | 3.6 | 1188 | 9.6 |
30471 | 550 | 16.9 | 2750 | 3.6 | 1215 | 9.6 |
30472 | 550 | 16.9 | 2750 | 3.6 | 1242 | 9.6 |
30473 | 550 | 16.9 | 2750 | 3.6 | 1269 | 9.6 |
30474 | 550 | 16.9 | 2750 | 3.6 | 1296 | 9.6 |
30557 | 500 | 16.1 | 2500 | 4.0 | 1475 | 8.1 |
30550 | 500 | 15.9 | 2500 | 4.0 | 1300 | 7.9 |
30551 | 500 | 15.9 | 2500 | 4.0 | 1325 | 7.9 |
30552 | 500 | 15.9 | 2500 | 4.0 | 1350 | 7.9 |
30553 | 500 | 15.9 | 2500 | 4.0 | 1375 | 7.9 |
30554 | 500 | 15.9 | 2500 | 4.0 | 1400 | 7.9 |
30555 | 500 | 15.9 | 2500 | 4.0 | 1425 | 7.9 |
30556 | 500 | 15.9 | 2500 | 4.0 | 1450 | 7.9 |
30543 | 500 | 15.3 | 2500 | 4.0 | 1125 | 7.3 |
30544 | 500 | 15.3 | 2500 | 4.0 | 1150 | 7.3 |
30545 | 500 | 15.3 | 2500 | 4.0 | 1175 | 7.3 |
30546 | 500 | 15.3 | 2500 | 4.0 | 1200 | 7.3 |
30547 | 500 | 15.3 | 2500 | 4.0 | 1225 | 7.3 |
30548 | 500 | 15.3 | 2500 | 4.0 | 1250 | 7.3 |
30549 | 500 | 15.3 | 2500 | 4.0 | 1275 | 7.3 |
30518 | 500 | 11.9 | 2500 | 4.4 | 500 | 3.1 |
Overall score = score_ratio - 2 * repetitive DNA content