Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign50 - back to list
Summary
./analyse_probe_search_results : Mon Sep 26 11:52:39 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign50 assembly : NCBIM34 bias : 5prime chromosome : 6 id : 32 strand : 1 ------------- Design window length: 2501bp All jobs for probe design are successful - total: 35 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 699 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 5prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 699/699 Putative probes exceeding selection criteria: 384/699 PASSED (GREEN) AND FAILED PUTATIVE PROBES IN THE DESIGN WINDOW --------------------------------------------------------------
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
No probes
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
34012 | 1300 | 42.2 | 6500 | - | 780 | 42.2 |
34013 | 1300 | 42.2 | 6500 | - | 845 | 42.2 |
34014 | 1300 | 42.2 | 6500 | - | 910 | 42.2 |
34015 | 1300 | 42.2 | 6500 | - | 975 | 42.2 |
34016 | 1300 | 42.2 | 6500 | - | 1040 | 42.2 |
34017 | 1300 | 42.2 | 6500 | - | 1105 | 42.2 |
34018 | 1300 | 42.2 | 6500 | - | 1170 | 42.2 |
34031 | 1250 | 40.6 | 6250 | - | 744 | 40.6 |
34032 | 1250 | 40.6 | 6250 | - | 806 | 40.6 |
34033 | 1250 | 40.6 | 6250 | - | 868 | 40.6 |
34034 | 1250 | 40.6 | 6250 | - | 930 | 40.6 |
34035 | 1250 | 40.6 | 6250 | - | 992 | 40.6 |
34036 | 1250 | 40.6 | 6250 | - | 1054 | 40.6 |
34037 | 1250 | 40.6 | 6250 | - | 1116 | 40.6 |
34038 | 1250 | 40.6 | 6250 | - | 1178 | 40.6 |
34039 | 1250 | 40.6 | 6250 | - | 1240 | 40.6 |
34008 | 1300 | 39.4 | 6500 | - | 520 | 39.4 |
34009 | 1300 | 39.4 | 6500 | - | 585 | 39.4 |
34010 | 1300 | 39.4 | 6500 | - | 650 | 39.4 |
34011 | 1300 | 39.4 | 6500 | - | 715 | 39.4 |
34053 | 1200 | 39.0 | 6000 | - | 780 | 39.0 |
34054 | 1200 | 39.0 | 6000 | - | 840 | 39.0 |
34055 | 1200 | 39.0 | 6000 | - | 900 | 39.0 |
34056 | 1200 | 39.0 | 6000 | - | 960 | 39.0 |
34057 | 1200 | 39.0 | 6000 | - | 1020 | 39.0 |
34058 | 1200 | 39.0 | 6000 | - | 1080 | 39.0 |
34059 | 1200 | 39.0 | 6000 | - | 1140 | 39.0 |
34060 | 1200 | 39.0 | 6000 | - | 1200 | 39.0 |
34061 | 1200 | 39.0 | 6000 | - | 1260 | 39.0 |
34027 | 1250 | 37.9 | 6250 | - | 496 | 37.9 |
34028 | 1250 | 37.9 | 6250 | - | 558 | 37.9 |
34029 | 1250 | 37.9 | 6250 | - | 620 | 37.9 |
34030 | 1250 | 37.9 | 6250 | - | 682 | 37.9 |
34076 | 1150 | 37.3 | 5750 | - | 798 | 37.3 |
34077 | 1150 | 37.3 | 5750 | - | 855 | 37.3 |
34078 | 1150 | 37.3 | 5750 | - | 912 | 37.3 |
34079 | 1150 | 37.3 | 5750 | - | 969 | 37.3 |
34080 | 1150 | 37.3 | 5750 | - | 1026 | 37.3 |
34081 | 1150 | 37.3 | 5750 | - | 1083 | 37.3 |
34082 | 1150 | 37.3 | 5750 | - | 1140 | 37.3 |
34083 | 1150 | 37.3 | 5750 | - | 1197 | 37.3 |
34084 | 1150 | 37.3 | 5750 | - | 1254 | 37.3 |
34085 | 1150 | 37.3 | 5750 | - | 1311 | 37.3 |
34049 | 1200 | 36.4 | 6000 | - | 540 | 36.4 |
34050 | 1200 | 36.4 | 6000 | - | 600 | 36.4 |
34051 | 1200 | 36.4 | 6000 | - | 660 | 36.4 |
34052 | 1200 | 36.4 | 6000 | - | 720 | 36.4 |
34075 | 1150 | 36.2 | 5750 | - | 741 | 36.2 |
34100 | 1100 | 35.7 | 5500 | - | 770 | 35.7 |
34101 | 1100 | 35.7 | 5500 | - | 825 | 35.7 |
34102 | 1100 | 35.7 | 5500 | - | 880 | 35.7 |
34103 | 1100 | 35.7 | 5500 | - | 935 | 35.7 |
34104 | 1100 | 35.7 | 5500 | - | 990 | 35.7 |
34105 | 1100 | 35.7 | 5500 | - | 1045 | 35.7 |
34106 | 1100 | 35.7 | 5500 | - | 1100 | 35.7 |
34107 | 1100 | 35.7 | 5500 | - | 1155 | 35.7 |
34108 | 1100 | 35.7 | 5500 | - | 1210 | 35.7 |
34109 | 1100 | 35.7 | 5500 | - | 1265 | 35.7 |
34110 | 1100 | 35.7 | 5500 | - | 1320 | 35.7 |
34111 | 1100 | 35.7 | 5500 | - | 1375 | 35.7 |
34048 | 1200 | 36.4 | 6000 | 0.4 | 480 | 35.5 |
34071 | 1150 | 34.8 | 5750 | - | 513 | 34.8 |
34072 | 1150 | 34.8 | 5750 | - | 570 | 34.8 |
34073 | 1150 | 34.8 | 5750 | - | 627 | 34.8 |
34074 | 1150 | 34.8 | 5750 | - | 684 | 34.8 |
34007 | 1300 | 39.4 | 6500 | 2.3 | 455 | 34.8 |
34127 | 1050 | 34.1 | 5250 | - | 780 | 34.1 |
34128 | 1050 | 34.1 | 5250 | - | 832 | 34.1 |
34129 | 1050 | 34.1 | 5250 | - | 884 | 34.1 |
34130 | 1050 | 34.1 | 5250 | - | 936 | 34.1 |
34131 | 1050 | 34.1 | 5250 | - | 988 | 34.1 |
34132 | 1050 | 34.1 | 5250 | - | 1040 | 34.1 |
34133 | 1050 | 34.1 | 5250 | - | 1092 | 34.1 |
34134 | 1050 | 34.1 | 5250 | - | 1144 | 34.1 |
34135 | 1050 | 34.1 | 5250 | - | 1196 | 34.1 |
34136 | 1050 | 34.1 | 5250 | - | 1248 | 34.1 |
34137 | 1050 | 34.1 | 5250 | - | 1300 | 34.1 |
34138 | 1050 | 34.1 | 5250 | - | 1352 | 34.1 |
34139 | 1050 | 34.1 | 5250 | - | 1404 | 34.1 |
34095 | 1100 | 33.3 | 5500 | - | 495 | 33.3 |
34096 | 1100 | 33.3 | 5500 | - | 550 | 33.3 |
34097 | 1100 | 33.3 | 5500 | - | 605 | 33.3 |
34098 | 1100 | 33.3 | 5500 | - | 660 | 33.3 |
34099 | 1100 | 33.3 | 5500 | - | 715 | 33.3 |
34155 | 1000 | 32.5 | 5000 | - | 750 | 32.5 |
34156 | 1000 | 32.5 | 5000 | - | 800 | 32.5 |
34157 | 1000 | 32.5 | 5000 | - | 850 | 32.5 |
34158 | 1000 | 32.5 | 5000 | - | 900 | 32.5 |
34159 | 1000 | 32.5 | 5000 | - | 950 | 32.5 |
34160 | 1000 | 32.5 | 5000 | - | 1000 | 32.5 |
34161 | 1000 | 32.5 | 5000 | - | 1050 | 32.5 |
34162 | 1000 | 32.5 | 5000 | - | 1100 | 32.5 |
34163 | 1000 | 32.5 | 5000 | - | 1150 | 32.5 |
34164 | 1000 | 32.5 | 5000 | - | 1200 | 32.5 |
34165 | 1000 | 32.5 | 5000 | - | 1250 | 32.5 |
34166 | 1000 | 32.5 | 5000 | - | 1300 | 32.5 |
34167 | 1000 | 32.5 | 5000 | - | 1350 | 32.5 |
34168 | 1000 | 32.5 | 5000 | - | 1400 | 32.5 |
34169 | 1000 | 32.5 | 5000 | - | 1450 | 32.5 |
34170 | 1000 | 32.5 | 5000 | - | 1500 | 32.5 |
34122 | 1050 | 31.8 | 5250 | - | 520 | 31.8 |
34123 | 1050 | 31.8 | 5250 | - | 572 | 31.8 |
34124 | 1050 | 31.8 | 5250 | - | 624 | 31.8 |
34125 | 1050 | 31.8 | 5250 | - | 676 | 31.8 |
34126 | 1050 | 31.8 | 5250 | - | 728 | 31.8 |
34187 | 950 | 30.8 | 4750 | - | 752 | 30.8 |
34188 | 950 | 30.8 | 4750 | - | 799 | 30.8 |
34189 | 950 | 30.8 | 4750 | - | 846 | 30.8 |
34190 | 950 | 30.8 | 4750 | - | 893 | 30.8 |
34191 | 950 | 30.8 | 4750 | - | 940 | 30.8 |
34192 | 950 | 30.8 | 4750 | - | 987 | 30.8 |
34193 | 950 | 30.8 | 4750 | - | 1034 | 30.8 |
34194 | 950 | 30.8 | 4750 | - | 1081 | 30.8 |
34195 | 950 | 30.8 | 4750 | - | 1128 | 30.8 |
34196 | 950 | 30.8 | 4750 | - | 1175 | 30.8 |
34197 | 950 | 30.8 | 4750 | - | 1222 | 30.8 |
34198 | 950 | 30.8 | 4750 | - | 1269 | 30.8 |
34199 | 950 | 30.8 | 4750 | - | 1316 | 30.8 |
34200 | 950 | 30.8 | 4750 | - | 1363 | 30.8 |
34201 | 950 | 30.8 | 4750 | - | 1410 | 30.8 |
34202 | 950 | 30.8 | 4750 | - | 1457 | 30.8 |
34203 | 950 | 30.8 | 4750 | - | 1504 | 30.8 |
34150 | 1000 | 30.3 | 5000 | - | 500 | 30.3 |
34151 | 1000 | 30.3 | 5000 | - | 550 | 30.3 |
34152 | 1000 | 30.3 | 5000 | - | 600 | 30.3 |
34153 | 1000 | 30.3 | 5000 | - | 650 | 30.3 |
34154 | 1000 | 30.3 | 5000 | - | 700 | 30.3 |
34026 | 1250 | 37.9 | 6250 | 4.1 | 434 | 29.7 |
34222 | 900 | 29.2 | 4500 | - | 810 | 29.2 |
34223 | 900 | 29.2 | 4500 | - | 855 | 29.2 |
34224 | 900 | 29.2 | 4500 | - | 900 | 29.2 |
34225 | 900 | 29.2 | 4500 | - | 945 | 29.2 |
34226 | 900 | 29.2 | 4500 | - | 990 | 29.2 |
34227 | 900 | 29.2 | 4500 | - | 1035 | 29.2 |
34228 | 900 | 29.2 | 4500 | - | 1080 | 29.2 |
34229 | 900 | 29.2 | 4500 | - | 1125 | 29.2 |
34230 | 900 | 29.2 | 4500 | - | 1170 | 29.2 |
34231 | 900 | 29.2 | 4500 | - | 1215 | 29.2 |
34232 | 900 | 29.2 | 4500 | - | 1260 | 29.2 |
34233 | 900 | 29.2 | 4500 | - | 1305 | 29.2 |
34234 | 900 | 29.2 | 4500 | - | 1350 | 29.2 |
34235 | 900 | 29.2 | 4500 | - | 1395 | 29.2 |
34236 | 900 | 29.2 | 4500 | - | 1440 | 29.2 |
34237 | 900 | 29.2 | 4500 | - | 1485 | 29.2 |
34238 | 900 | 29.2 | 4500 | - | 1530 | 29.2 |
34239 | 900 | 29.2 | 4500 | - | 1575 | 29.2 |
34182 | 950 | 28.8 | 4750 | - | 517 | 28.8 |
34183 | 950 | 28.8 | 4750 | - | 564 | 28.8 |
34184 | 950 | 28.8 | 4750 | - | 611 | 28.8 |
34185 | 950 | 28.8 | 4750 | - | 658 | 28.8 |
34186 | 950 | 28.8 | 4750 | - | 705 | 28.8 |
34121 | 1050 | 31.8 | 5250 | 1.6 | 468 | 28.6 |
34261 | 850 | 27.6 | 4250 | - | 882 | 27.6 |
34262 | 850 | 27.6 | 4250 | - | 924 | 27.6 |
34263 | 850 | 27.6 | 4250 | - | 966 | 27.6 |
34264 | 850 | 27.6 | 4250 | - | 1008 | 27.6 |
34265 | 850 | 27.6 | 4250 | - | 1050 | 27.6 |
34266 | 850 | 27.6 | 4250 | - | 1092 | 27.6 |
34267 | 850 | 27.6 | 4250 | - | 1134 | 27.6 |
34268 | 850 | 27.6 | 4250 | - | 1176 | 27.6 |
34269 | 850 | 27.6 | 4250 | - | 1218 | 27.6 |
34270 | 850 | 27.6 | 4250 | - | 1260 | 27.6 |
34271 | 850 | 27.6 | 4250 | - | 1302 | 27.6 |
34272 | 850 | 27.6 | 4250 | - | 1344 | 27.6 |
34273 | 850 | 27.6 | 4250 | - | 1386 | 27.6 |
34274 | 850 | 27.6 | 4250 | - | 1428 | 27.6 |
34275 | 850 | 27.6 | 4250 | - | 1470 | 27.6 |
34276 | 850 | 27.6 | 4250 | - | 1512 | 27.6 |
34277 | 850 | 27.6 | 4250 | - | 1554 | 27.6 |
34278 | 850 | 27.6 | 4250 | - | 1596 | 27.6 |
34279 | 850 | 27.6 | 4250 | - | 1638 | 27.6 |
34215 | 900 | 27.3 | 4500 | - | 495 | 27.3 |
34216 | 900 | 27.3 | 4500 | - | 540 | 27.3 |
34217 | 900 | 27.3 | 4500 | - | 585 | 27.3 |
34218 | 900 | 27.3 | 4500 | - | 630 | 27.3 |
34219 | 900 | 27.3 | 4500 | - | 675 | 27.3 |
34220 | 900 | 27.3 | 4500 | - | 720 | 27.3 |
34303 | 800 | 26.0 | 4000 | - | 920 | 26.0 |
34304 | 800 | 26.0 | 4000 | - | 960 | 26.0 |
34305 | 800 | 26.0 | 4000 | - | 1000 | 26.0 |
34306 | 800 | 26.0 | 4000 | - | 1040 | 26.0 |
34307 | 800 | 26.0 | 4000 | - | 1080 | 26.0 |
34308 | 800 | 26.0 | 4000 | - | 1120 | 26.0 |
34309 | 800 | 26.0 | 4000 | - | 1160 | 26.0 |
34310 | 800 | 26.0 | 4000 | - | 1200 | 26.0 |
34311 | 800 | 26.0 | 4000 | - | 1240 | 26.0 |
34312 | 800 | 26.0 | 4000 | - | 1280 | 26.0 |
34313 | 800 | 26.0 | 4000 | - | 1320 | 26.0 |
34314 | 800 | 26.0 | 4000 | - | 1360 | 26.0 |
34315 | 800 | 26.0 | 4000 | - | 1400 | 26.0 |
34316 | 800 | 26.0 | 4000 | - | 1440 | 26.0 |
34317 | 800 | 26.0 | 4000 | - | 1480 | 26.0 |
34318 | 800 | 26.0 | 4000 | - | 1520 | 26.0 |
34319 | 800 | 26.0 | 4000 | - | 1560 | 26.0 |
34320 | 800 | 26.0 | 4000 | - | 1600 | 26.0 |
34321 | 800 | 26.0 | 4000 | - | 1640 | 26.0 |
34252 | 850 | 25.8 | 4250 | - | 504 | 25.8 |
34253 | 850 | 25.8 | 4250 | - | 546 | 25.8 |
34254 | 850 | 25.8 | 4250 | - | 588 | 25.8 |
34255 | 850 | 25.8 | 4250 | - | 630 | 25.8 |
34256 | 850 | 25.8 | 4250 | - | 672 | 25.8 |
34257 | 850 | 25.8 | 4250 | - | 714 | 25.8 |
34181 | 950 | 28.8 | 4750 | 1.6 | 470 | 25.6 |
34349 | 750 | 24.4 | 3750 | - | 962 | 24.4 |
34350 | 750 | 24.4 | 3750 | - | 999 | 24.4 |
34351 | 750 | 24.4 | 3750 | - | 1036 | 24.4 |
34352 | 750 | 24.4 | 3750 | - | 1073 | 24.4 |
34353 | 750 | 24.4 | 3750 | - | 1110 | 24.4 |
34354 | 750 | 24.4 | 3750 | - | 1147 | 24.4 |
34355 | 750 | 24.4 | 3750 | - | 1184 | 24.4 |
34356 | 750 | 24.4 | 3750 | - | 1221 | 24.4 |
34357 | 750 | 24.4 | 3750 | - | 1258 | 24.4 |
34358 | 750 | 24.4 | 3750 | - | 1295 | 24.4 |
34359 | 750 | 24.4 | 3750 | - | 1332 | 24.4 |
34360 | 750 | 24.4 | 3750 | - | 1369 | 24.4 |
34361 | 750 | 24.4 | 3750 | - | 1406 | 24.4 |
34362 | 750 | 24.4 | 3750 | - | 1443 | 24.4 |
34363 | 750 | 24.4 | 3750 | - | 1480 | 24.4 |
34364 | 750 | 24.4 | 3750 | - | 1517 | 24.4 |
34365 | 750 | 24.4 | 3750 | - | 1554 | 24.4 |
34366 | 750 | 24.4 | 3750 | - | 1591 | 24.4 |
34367 | 750 | 24.4 | 3750 | - | 1628 | 24.4 |
34293 | 800 | 24.2 | 4000 | - | 520 | 24.2 |
34294 | 800 | 24.2 | 4000 | - | 560 | 24.2 |
34295 | 800 | 24.2 | 4000 | - | 600 | 24.2 |
34296 | 800 | 24.2 | 4000 | - | 640 | 24.2 |
34297 | 800 | 24.2 | 4000 | - | 680 | 24.2 |
34298 | 800 | 24.2 | 4000 | - | 720 | 24.2 |
34343 | 750 | 23.6 | 3750 | - | 740 | 23.6 |
34149 | 1000 | 30.3 | 5000 | 3.5 | 450 | 23.3 |
34418 | 700 | 23.0 | 3500 | - | 1645 | 23.0 |
34292 | 800 | 24.2 | 4000 | 0.6 | 480 | 23.0 |
34337 | 750 | 22.7 | 3750 | - | 518 | 22.7 |
34338 | 750 | 22.7 | 3750 | - | 555 | 22.7 |
34339 | 750 | 22.7 | 3750 | - | 592 | 22.7 |
34340 | 750 | 22.7 | 3750 | - | 629 | 22.7 |
34341 | 750 | 22.7 | 3750 | - | 666 | 22.7 |
34342 | 750 | 22.7 | 3750 | - | 703 | 22.7 |
34400 | 700 | 22.7 | 3500 | - | 1015 | 22.7 |
34401 | 700 | 22.7 | 3500 | - | 1050 | 22.7 |
34402 | 700 | 22.7 | 3500 | - | 1085 | 22.7 |
34403 | 700 | 22.7 | 3500 | - | 1120 | 22.7 |
34404 | 700 | 22.7 | 3500 | - | 1155 | 22.7 |
34405 | 700 | 22.7 | 3500 | - | 1190 | 22.7 |
34406 | 700 | 22.7 | 3500 | - | 1225 | 22.7 |
34407 | 700 | 22.7 | 3500 | - | 1260 | 22.7 |
34408 | 700 | 22.7 | 3500 | - | 1295 | 22.7 |
34409 | 700 | 22.7 | 3500 | - | 1330 | 22.7 |
34410 | 700 | 22.7 | 3500 | - | 1365 | 22.7 |
34411 | 700 | 22.7 | 3500 | - | 1400 | 22.7 |
34412 | 700 | 22.7 | 3500 | - | 1435 | 22.7 |
34413 | 700 | 22.7 | 3500 | - | 1470 | 22.7 |
34414 | 700 | 22.7 | 3500 | - | 1505 | 22.7 |
34415 | 700 | 22.7 | 3500 | - | 1540 | 22.7 |
34416 | 700 | 22.7 | 3500 | - | 1575 | 22.7 |
34417 | 700 | 22.7 | 3500 | - | 1610 | 22.7 |
34336 | 750 | 22.7 | 3750 | 0.5 | 481 | 21.7 |
34392 | 700 | 21.3 | 3500 | - | 735 | 21.3 |
34385 | 700 | 21.2 | 3500 | - | 490 | 21.2 |
34386 | 700 | 21.2 | 3500 | - | 525 | 21.2 |
34387 | 700 | 21.2 | 3500 | - | 560 | 21.2 |
34388 | 700 | 21.2 | 3500 | - | 595 | 21.2 |
34389 | 700 | 21.2 | 3500 | - | 630 | 21.2 |
34390 | 700 | 21.2 | 3500 | - | 665 | 21.2 |
34391 | 700 | 21.2 | 3500 | - | 700 | 21.2 |
34456 | 650 | 21.1 | 3250 | - | 1056 | 21.1 |
34457 | 650 | 21.1 | 3250 | - | 1088 | 21.1 |
34458 | 650 | 21.1 | 3250 | - | 1120 | 21.1 |
34459 | 650 | 21.1 | 3250 | - | 1152 | 21.1 |
34460 | 650 | 21.1 | 3250 | - | 1184 | 21.1 |
34461 | 650 | 21.1 | 3250 | - | 1216 | 21.1 |
34462 | 650 | 21.1 | 3250 | - | 1248 | 21.1 |
34463 | 650 | 21.1 | 3250 | - | 1280 | 21.1 |
34464 | 650 | 21.1 | 3250 | - | 1312 | 21.1 |
34465 | 650 | 21.1 | 3250 | - | 1344 | 21.1 |
34466 | 650 | 21.1 | 3250 | - | 1376 | 21.1 |
34467 | 650 | 21.1 | 3250 | - | 1408 | 21.1 |
34468 | 650 | 21.1 | 3250 | - | 1440 | 21.1 |
34469 | 650 | 21.1 | 3250 | - | 1472 | 21.1 |
34470 | 650 | 21.1 | 3250 | - | 1504 | 21.1 |
34471 | 650 | 21.1 | 3250 | - | 1536 | 21.1 |
34472 | 650 | 21.1 | 3250 | - | 1568 | 21.1 |
34473 | 650 | 21.1 | 3250 | - | 1600 | 21.1 |
34474 | 650 | 21.1 | 3250 | - | 1632 | 21.1 |
34446 | 650 | 19.9 | 3250 | - | 736 | 19.9 |
34439 | 650 | 19.7 | 3250 | - | 512 | 19.7 |
34440 | 650 | 19.7 | 3250 | - | 544 | 19.7 |
34441 | 650 | 19.7 | 3250 | - | 576 | 19.7 |
34442 | 650 | 19.7 | 3250 | - | 608 | 19.7 |
34443 | 650 | 19.7 | 3250 | - | 640 | 19.7 |
34444 | 650 | 19.7 | 3250 | - | 672 | 19.7 |
34445 | 650 | 19.7 | 3250 | - | 704 | 19.7 |
34214 | 900 | 27.3 | 4500 | 3.9 | 450 | 19.5 |
34518 | 600 | 19.5 | 3000 | - | 1110 | 19.5 |
34519 | 600 | 19.5 | 3000 | - | 1140 | 19.5 |
34520 | 600 | 19.5 | 3000 | - | 1170 | 19.5 |
34521 | 600 | 19.5 | 3000 | - | 1200 | 19.5 |
34522 | 600 | 19.5 | 3000 | - | 1230 | 19.5 |
34523 | 600 | 19.5 | 3000 | - | 1260 | 19.5 |
34524 | 600 | 19.5 | 3000 | - | 1290 | 19.5 |
34525 | 600 | 19.5 | 3000 | - | 1320 | 19.5 |
34526 | 600 | 19.5 | 3000 | - | 1350 | 19.5 |
34527 | 600 | 19.5 | 3000 | - | 1380 | 19.5 |
34528 | 600 | 19.5 | 3000 | - | 1410 | 19.5 |
34529 | 600 | 19.5 | 3000 | - | 1440 | 19.5 |
34530 | 600 | 19.5 | 3000 | - | 1470 | 19.5 |
34531 | 600 | 19.5 | 3000 | - | 1500 | 19.5 |
34532 | 600 | 19.5 | 3000 | - | 1530 | 19.5 |
34533 | 600 | 19.5 | 3000 | - | 1560 | 19.5 |
34534 | 600 | 19.5 | 3000 | - | 1590 | 19.5 |
34535 | 600 | 19.5 | 3000 | - | 1620 | 19.5 |
34606 | 550 | 18.2 | 2750 | - | 1647 | 18.2 |
34498 | 600 | 18.2 | 3000 | - | 510 | 18.2 |
34499 | 600 | 18.2 | 3000 | - | 540 | 18.2 |
34500 | 600 | 18.2 | 3000 | - | 570 | 18.2 |
34501 | 600 | 18.2 | 3000 | - | 600 | 18.2 |
34502 | 600 | 18.2 | 3000 | - | 630 | 18.2 |
34503 | 600 | 18.2 | 3000 | - | 660 | 18.2 |
34504 | 600 | 18.2 | 3000 | - | 690 | 18.2 |
34505 | 600 | 18.2 | 3000 | - | 720 | 18.2 |
34438 | 650 | 19.7 | 3250 | 0.8 | 480 | 18.2 |
34588 | 550 | 17.9 | 2750 | - | 1161 | 17.9 |
34589 | 550 | 17.9 | 2750 | - | 1188 | 17.9 |
34590 | 550 | 17.9 | 2750 | - | 1215 | 17.9 |
34591 | 550 | 17.9 | 2750 | - | 1242 | 17.9 |
34592 | 550 | 17.9 | 2750 | - | 1269 | 17.9 |
34593 | 550 | 17.9 | 2750 | - | 1296 | 17.9 |
34594 | 550 | 17.9 | 2750 | - | 1323 | 17.9 |
34595 | 550 | 17.9 | 2750 | - | 1350 | 17.9 |
34596 | 550 | 17.9 | 2750 | - | 1377 | 17.9 |
34597 | 550 | 17.9 | 2750 | - | 1404 | 17.9 |
34598 | 550 | 17.9 | 2750 | - | 1431 | 17.9 |
34599 | 550 | 17.9 | 2750 | - | 1458 | 17.9 |
34600 | 550 | 17.9 | 2750 | - | 1485 | 17.9 |
34601 | 550 | 17.9 | 2750 | - | 1512 | 17.9 |
34602 | 550 | 17.9 | 2750 | - | 1539 | 17.9 |
34603 | 550 | 17.9 | 2750 | - | 1566 | 17.9 |
34604 | 550 | 17.9 | 2750 | - | 1593 | 17.9 |
34605 | 550 | 17.9 | 2750 | - | 1620 | 17.9 |
34563 | 550 | 16.7 | 2750 | - | 486 | 16.7 |
34564 | 550 | 16.7 | 2750 | - | 513 | 16.7 |
34565 | 550 | 16.7 | 2750 | - | 540 | 16.7 |
34566 | 550 | 16.7 | 2750 | - | 567 | 16.7 |
34567 | 550 | 16.7 | 2750 | - | 594 | 16.7 |
34568 | 550 | 16.7 | 2750 | - | 621 | 16.7 |
34569 | 550 | 16.7 | 2750 | - | 648 | 16.7 |
34570 | 550 | 16.7 | 2750 | - | 675 | 16.7 |
34571 | 550 | 16.7 | 2750 | - | 702 | 16.7 |
34572 | 550 | 16.7 | 2750 | - | 729 | 16.7 |
34497 | 600 | 18.2 | 3000 | 0.8 | 480 | 16.5 |
34666 | 500 | 16.2 | 2500 | - | 1200 | 16.2 |
34667 | 500 | 16.2 | 2500 | - | 1225 | 16.2 |
34668 | 500 | 16.2 | 2500 | - | 1250 | 16.2 |
34669 | 500 | 16.2 | 2500 | - | 1275 | 16.2 |
34670 | 500 | 16.2 | 2500 | - | 1300 | 16.2 |
34671 | 500 | 16.2 | 2500 | - | 1325 | 16.2 |
34672 | 500 | 16.2 | 2500 | - | 1350 | 16.2 |
34673 | 500 | 16.2 | 2500 | - | 1375 | 16.2 |
34674 | 500 | 16.2 | 2500 | - | 1400 | 16.2 |
34675 | 500 | 16.2 | 2500 | - | 1425 | 16.2 |
34676 | 500 | 16.2 | 2500 | - | 1450 | 16.2 |
34677 | 500 | 16.2 | 2500 | - | 1475 | 16.2 |
34678 | 500 | 16.2 | 2500 | - | 1500 | 16.2 |
34679 | 500 | 16.2 | 2500 | - | 1525 | 16.2 |
34680 | 500 | 16.2 | 2500 | - | 1550 | 16.2 |
34681 | 500 | 16.2 | 2500 | - | 1575 | 16.2 |
34682 | 500 | 16.2 | 2500 | - | 1600 | 16.2 |
34683 | 500 | 16.2 | 2500 | - | 1625 | 16.2 |
34638 | 500 | 15.2 | 2500 | - | 500 | 15.2 |
34639 | 500 | 15.2 | 2500 | - | 525 | 15.2 |
34640 | 500 | 15.2 | 2500 | - | 550 | 15.2 |
34641 | 500 | 15.2 | 2500 | - | 575 | 15.2 |
34642 | 500 | 15.2 | 2500 | - | 600 | 15.2 |
34643 | 500 | 15.2 | 2500 | - | 625 | 15.2 |
34644 | 500 | 15.2 | 2500 | - | 650 | 15.2 |
34645 | 500 | 15.2 | 2500 | - | 675 | 15.2 |
34646 | 500 | 15.2 | 2500 | - | 700 | 15.2 |
34647 | 500 | 15.2 | 2500 | - | 725 | 15.2 |
34637 | 500 | 15.2 | 2500 | 2.0 | 475 | 11.2 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
34070 | 1150 | 34.8 | 5750 | 2.5 | 456 | 29.8 |
34094 | 1100 | 33.3 | 5500 | 4.1 | 440 | 25.2 |
34251 | 850 | 25.8 | 4250 | 2.7 | 462 | 20.3 |
34384 | 700 | 21.2 | 3500 | 4.3 | 455 | 12.6 |
34562 | 550 | 16.7 | 2750 | 4.7 | 459 | 7.2 |
Overall score = score_ratio - 2 * repetitive DNA content