Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign71 - back to list
Summary
./analyse_probe_search_results : Thu Oct 20 11:04:42 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign71 assembly : NCBIM34 bias : 3prime chromosome : X id : 68 strand : 1 ------------- Design window length: 3501bp All jobs for probe design are successful - total: 56 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 1114 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 1114/1114 Putative probes that are unique : 1/1114 Putative probes exceeding selection criteria : 313/1114 (but not unique) Putative probes with successfully-picked primers: 266/314 Identified 58 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
66300 | 500 | 2500 | 8.4 | 575 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
65447 | 1100 | 34.0 | 5500 | 1.1 | 605 | 31.8 |
65492 | 1050 | 32.4 | 5250 | 0.9 | 624 | 30.7 |
65541 | 1000 | 30.9 | 5000 | 0.9 | 650 | 29.1 |
65542 | 1000 | 30.9 | 5000 | 0.9 | 700 | 29.1 |
65493 | 1050 | 32.4 | 5250 | 2.4 | 676 | 27.6 |
65540 | 1000 | 30.9 | 5000 | 1.7 | 600 | 27.5 |
65592 | 950 | 29.3 | 4750 | 0.9 | 611 | 27.4 |
65593 | 950 | 29.3 | 4750 | 0.9 | 658 | 27.4 |
65594 | 950 | 29.3 | 4750 | 0.9 | 705 | 27.4 |
65595 | 950 | 29.3 | 4750 | 0.9 | 752 | 27.4 |
65648 | 900 | 27.8 | 4500 | 1.0 | 630 | 25.8 |
65649 | 900 | 27.8 | 4500 | 1.0 | 675 | 25.8 |
65650 | 900 | 27.8 | 4500 | 1.0 | 720 | 25.8 |
65651 | 900 | 27.8 | 4500 | 1.0 | 765 | 25.8 |
65652 | 900 | 27.8 | 4500 | 1.0 | 810 | 25.8 |
65404 | 1150 | 35.5 | 5750 | 5.0 | 570 | 25.6 |
65479 | 1100 | 30.6 | 5500 | 3.2 | 2365 | 24.2 |
65707 | 850 | 26.2 | 4250 | 1.1 | 630 | 24.1 |
65708 | 850 | 26.2 | 4250 | 1.1 | 672 | 24.1 |
65709 | 850 | 26.2 | 4250 | 1.1 | 714 | 24.1 |
65710 | 850 | 26.2 | 4250 | 1.1 | 756 | 24.1 |
65711 | 850 | 26.2 | 4250 | 1.1 | 798 | 24.1 |
65712 | 850 | 26.2 | 4250 | 1.1 | 840 | 24.1 |
65491 | 1050 | 32.4 | 5250 | 4.3 | 572 | 23.8 |
65526 | 1050 | 29.2 | 5250 | 3.3 | 2392 | 22.5 |
65527 | 1050 | 29.2 | 5250 | 3.3 | 2444 | 22.5 |
65772 | 800 | 24.7 | 4000 | 1.1 | 640 | 22.4 |
65773 | 800 | 24.7 | 4000 | 1.1 | 680 | 22.4 |
65774 | 800 | 24.7 | 4000 | 1.1 | 720 | 22.4 |
65775 | 800 | 24.7 | 4000 | 1.1 | 760 | 22.4 |
65776 | 800 | 24.7 | 4000 | 1.1 | 800 | 22.4 |
65777 | 800 | 24.7 | 4000 | 1.1 | 840 | 22.4 |
65778 | 800 | 24.7 | 4000 | 1.1 | 880 | 22.4 |
65435 | 1150 | 31.9 | 5750 | 4.8 | 2337 | 22.4 |
65755 | 850 | 23.6 | 4250 | 1.1 | 2646 | 21.5 |
65576 | 1000 | 27.8 | 5000 | 3.5 | 2400 | 20.8 |
65577 | 1000 | 27.8 | 5000 | 3.5 | 2450 | 20.8 |
65578 | 1000 | 27.8 | 5000 | 3.5 | 2500 | 20.8 |
65841 | 750 | 23.1 | 3750 | 1.2 | 629 | 20.7 |
65842 | 750 | 23.1 | 3750 | 1.2 | 666 | 20.7 |
65843 | 750 | 23.1 | 3750 | 1.2 | 703 | 20.7 |
65844 | 750 | 23.1 | 3750 | 1.2 | 740 | 20.7 |
65845 | 750 | 23.1 | 3750 | 1.2 | 777 | 20.7 |
65846 | 750 | 23.1 | 3750 | 1.2 | 814 | 20.7 |
65847 | 750 | 23.1 | 3750 | 1.2 | 851 | 20.7 |
65848 | 750 | 23.1 | 3750 | 1.2 | 888 | 20.7 |
65849 | 750 | 23.1 | 3750 | 1.2 | 925 | 20.7 |
65647 | 900 | 27.8 | 4500 | 3.6 | 585 | 20.7 |
65771 | 800 | 24.7 | 4000 | 2.1 | 600 | 20.4 |
65294 | 1300 | 27.7 | 6500 | 3.6 | 650 | 20.4 |
65295 | 1300 | 27.7 | 6500 | 3.6 | 715 | 20.4 |
65917 | 700 | 22.9 | 3500 | 1.3 | 630 | 20.3 |
65850 | 750 | 23.1 | 3750 | 1.5 | 962 | 20.2 |
65928 | 700 | 21.6 | 3500 | 0.7 | 1015 | 20.2 |
66012 | 650 | 20.1 | 3250 | - | 1024 | 20.1 |
66013 | 650 | 20.1 | 3250 | - | 1056 | 20.1 |
65822 | 800 | 22.2 | 4000 | 1.1 | 2640 | 20.0 |
65823 | 800 | 22.2 | 4000 | 1.1 | 2680 | 20.0 |
65779 | 800 | 24.7 | 4000 | 2.4 | 920 | 19.9 |
65706 | 850 | 26.2 | 4250 | 3.4 | 588 | 19.4 |
65575 | 1000 | 27.8 | 5000 | 4.2 | 2350 | 19.4 |
65754 | 850 | 23.6 | 4250 | 2.1 | 2604 | 19.4 |
66011 | 650 | 20.1 | 3250 | 0.5 | 992 | 19.1 |
65328 | 1250 | 26.6 | 6250 | 3.8 | 620 | 19.1 |
65331 | 1250 | 26.6 | 6250 | 3.8 | 806 | 19.1 |
65918 | 700 | 21.6 | 3500 | 1.3 | 665 | 19.0 |
65919 | 700 | 21.6 | 3500 | 1.3 | 700 | 19.0 |
65920 | 700 | 21.6 | 3500 | 1.3 | 735 | 19.0 |
65921 | 700 | 21.6 | 3500 | 1.3 | 770 | 19.0 |
65922 | 700 | 21.6 | 3500 | 1.3 | 805 | 19.0 |
65923 | 700 | 21.6 | 3500 | 1.3 | 840 | 19.0 |
65924 | 700 | 21.6 | 3500 | 1.3 | 875 | 19.0 |
65925 | 700 | 21.6 | 3500 | 1.3 | 910 | 19.0 |
65926 | 700 | 21.6 | 3500 | 1.3 | 945 | 19.0 |
65927 | 700 | 21.6 | 3500 | 1.3 | 980 | 19.0 |
65630 | 950 | 26.4 | 4750 | 3.7 | 2397 | 19.0 |
65631 | 950 | 26.4 | 4750 | 3.7 | 2444 | 19.0 |
65632 | 950 | 26.4 | 4750 | 3.7 | 2491 | 19.0 |
66104 | 600 | 18.5 | 3000 | - | 1020 | 18.5 |
66105 | 600 | 18.5 | 3000 | - | 1050 | 18.5 |
66106 | 600 | 18.5 | 3000 | - | 1080 | 18.5 |
66107 | 600 | 18.5 | 3000 | - | 1110 | 18.5 |
65999 | 650 | 21.2 | 3250 | 1.4 | 608 | 18.5 |
66000 | 650 | 21.2 | 3250 | 1.4 | 640 | 18.5 |
66001 | 650 | 21.2 | 3250 | 1.4 | 672 | 18.5 |
65895 | 750 | 20.8 | 3750 | 1.2 | 2627 | 18.4 |
65896 | 750 | 20.8 | 3750 | 1.2 | 2664 | 18.4 |
65897 | 750 | 20.8 | 3750 | 1.2 | 2701 | 18.4 |
65898 | 750 | 20.8 | 3750 | 1.2 | 2738 | 18.4 |
65296 | 1300 | 27.7 | 6500 | 4.8 | 780 | 18.1 |
66069 | 650 | 18.1 | 3250 | - | 2848 | 18.1 |
65840 | 750 | 24.5 | 3750 | 3.3 | 592 | 17.8 |
65369 | 1200 | 25.5 | 6000 | 3.9 | 840 | 17.7 |
65629 | 950 | 26.4 | 4750 | 4.4 | 2350 | 17.5 |
66002 | 650 | 20.1 | 3250 | 1.4 | 704 | 17.3 |
66003 | 650 | 20.1 | 3250 | 1.4 | 736 | 17.3 |
66004 | 650 | 20.1 | 3250 | 1.4 | 768 | 17.3 |
66005 | 650 | 20.1 | 3250 | 1.4 | 800 | 17.3 |
66006 | 650 | 20.1 | 3250 | 1.4 | 832 | 17.3 |
66007 | 650 | 20.1 | 3250 | 1.4 | 864 | 17.3 |
66008 | 650 | 20.1 | 3250 | 1.4 | 896 | 17.3 |
66009 | 650 | 20.1 | 3250 | 1.4 | 928 | 17.3 |
66010 | 650 | 20.1 | 3250 | 1.4 | 960 | 17.3 |
65687 | 900 | 25.0 | 4500 | 3.9 | 2385 | 17.2 |
65688 | 900 | 25.0 | 4500 | 3.9 | 2430 | 17.2 |
65689 | 900 | 25.0 | 4500 | 3.9 | 2475 | 17.2 |
65690 | 900 | 25.0 | 4500 | 3.9 | 2520 | 17.2 |
65691 | 900 | 25.0 | 4500 | 3.9 | 2565 | 17.2 |
66204 | 550 | 17.0 | 2750 | - | 999 | 17.0 |
66205 | 550 | 17.0 | 2750 | - | 1026 | 17.0 |
66206 | 550 | 17.0 | 2750 | - | 1053 | 17.0 |
66207 | 550 | 17.0 | 2750 | - | 1080 | 17.0 |
66208 | 550 | 17.0 | 2750 | - | 1107 | 17.0 |
66209 | 550 | 17.0 | 2750 | - | 1134 | 17.0 |
65974 | 700 | 19.4 | 3500 | 1.3 | 2625 | 16.9 |
65975 | 700 | 19.4 | 3500 | 1.3 | 2660 | 16.9 |
65976 | 700 | 19.4 | 3500 | 1.3 | 2695 | 16.9 |
65977 | 700 | 19.4 | 3500 | 1.3 | 2730 | 16.9 |
65978 | 700 | 19.4 | 3500 | 1.3 | 2765 | 16.9 |
65979 | 700 | 19.4 | 3500 | 1.3 | 2800 | 16.9 |
66103 | 600 | 18.5 | 3000 | 0.8 | 990 | 16.9 |
65821 | 800 | 22.2 | 4000 | 2.8 | 2600 | 16.7 |
66165 | 600 | 16.7 | 3000 | - | 2850 | 16.7 |
66166 | 600 | 16.7 | 3000 | - | 2880 | 16.7 |
66210 | 550 | 17.0 | 2750 | 0.2 | 1161 | 16.6 |
66091 | 600 | 19.6 | 3000 | 1.5 | 630 | 16.6 |
66092 | 600 | 19.6 | 3000 | 1.5 | 660 | 16.6 |
66093 | 600 | 19.6 | 3000 | 1.5 | 690 | 16.6 |
66094 | 600 | 19.6 | 3000 | 1.5 | 720 | 16.6 |
65916 | 700 | 22.9 | 3500 | 3.1 | 595 | 16.6 |
65365 | 1200 | 25.5 | 6000 | 4.6 | 600 | 16.4 |
65410 | 1150 | 24.5 | 5750 | 4.1 | 912 | 16.3 |
66095 | 600 | 18.5 | 3000 | 1.5 | 750 | 15.5 |
66096 | 600 | 18.5 | 3000 | 1.5 | 780 | 15.5 |
66097 | 600 | 18.5 | 3000 | 1.5 | 810 | 15.5 |
66098 | 600 | 18.5 | 3000 | 1.5 | 840 | 15.5 |
66099 | 600 | 18.5 | 3000 | 1.5 | 870 | 15.5 |
66100 | 600 | 18.5 | 3000 | 1.5 | 900 | 15.5 |
66101 | 600 | 18.5 | 3000 | 1.5 | 930 | 15.5 |
66102 | 600 | 18.5 | 3000 | 1.5 | 960 | 15.5 |
66317 | 500 | 15.4 | 2500 | - | 1000 | 15.4 |
66318 | 500 | 15.4 | 2500 | - | 1025 | 15.4 |
66319 | 500 | 15.4 | 2500 | - | 1050 | 15.4 |
66320 | 500 | 15.4 | 2500 | - | 1075 | 15.4 |
66321 | 500 | 15.4 | 2500 | - | 1100 | 15.4 |
66322 | 500 | 15.4 | 2500 | - | 1125 | 15.4 |
66323 | 500 | 15.4 | 2500 | - | 1150 | 15.4 |
66324 | 500 | 15.4 | 2500 | - | 1175 | 15.4 |
66325 | 500 | 15.4 | 2500 | - | 1200 | 15.4 |
65749 | 850 | 23.6 | 4250 | 4.1 | 2394 | 15.4 |
65750 | 850 | 23.6 | 4250 | 4.1 | 2436 | 15.4 |
65751 | 850 | 23.6 | 4250 | 4.1 | 2478 | 15.4 |
65752 | 850 | 23.6 | 4250 | 4.1 | 2520 | 15.4 |
65753 | 850 | 23.6 | 4250 | 4.1 | 2562 | 15.4 |
66062 | 650 | 18.1 | 3250 | 1.4 | 2624 | 15.3 |
66063 | 650 | 18.1 | 3250 | 1.4 | 2656 | 15.3 |
66064 | 650 | 18.1 | 3250 | 1.4 | 2688 | 15.3 |
66065 | 650 | 18.1 | 3250 | 1.4 | 2720 | 15.3 |
66066 | 650 | 18.1 | 3250 | 1.4 | 2752 | 15.3 |
66067 | 650 | 18.1 | 3250 | 1.4 | 2784 | 15.3 |
66068 | 650 | 18.1 | 3250 | 1.4 | 2816 | 15.3 |
66273 | 550 | 15.3 | 2750 | - | 2862 | 15.3 |
66274 | 550 | 15.3 | 2750 | - | 2889 | 15.3 |
66275 | 550 | 15.3 | 2750 | - | 2916 | 15.3 |
66276 | 550 | 15.3 | 2750 | - | 2943 | 15.3 |
65453 | 1100 | 23.4 | 5500 | 4.3 | 935 | 14.9 |
66190 | 550 | 18.0 | 2750 | 1.6 | 621 | 14.7 |
66191 | 550 | 18.0 | 2750 | 1.6 | 648 | 14.7 |
66192 | 550 | 18.0 | 2750 | 1.6 | 675 | 14.7 |
66193 | 550 | 18.0 | 2750 | 1.6 | 702 | 14.7 |
66194 | 550 | 18.0 | 2750 | 1.6 | 729 | 14.7 |
66195 | 550 | 18.0 | 2750 | 1.6 | 756 | 14.7 |
66196 | 550 | 18.0 | 2750 | 1.6 | 783 | 14.7 |
65748 | 850 | 23.6 | 4250 | 4.7 | 2352 | 14.2 |
66090 | 600 | 19.6 | 3000 | 2.8 | 600 | 13.9 |
66391 | 500 | 13.9 | 2500 | - | 2850 | 13.9 |
66392 | 500 | 13.9 | 2500 | - | 2875 | 13.9 |
66393 | 500 | 13.9 | 2500 | - | 2900 | 13.9 |
66394 | 500 | 13.9 | 2500 | - | 2925 | 13.9 |
66395 | 500 | 13.9 | 2500 | - | 2950 | 13.9 |
66396 | 500 | 13.9 | 2500 | - | 2975 | 13.9 |
66397 | 500 | 13.9 | 2500 | - | 3000 | 13.9 |
66272 | 550 | 15.3 | 2750 | 0.7 | 2835 | 13.8 |
65499 | 1050 | 22.3 | 5250 | 4.3 | 988 | 13.8 |
66197 | 550 | 17.0 | 2750 | 1.6 | 810 | 13.7 |
66198 | 550 | 17.0 | 2750 | 1.6 | 837 | 13.7 |
66199 | 550 | 17.0 | 2750 | 1.6 | 864 | 13.7 |
66200 | 550 | 17.0 | 2750 | 1.6 | 891 | 13.7 |
66201 | 550 | 17.0 | 2750 | 1.6 | 918 | 13.7 |
66202 | 550 | 17.0 | 2750 | 1.6 | 945 | 13.7 |
66203 | 550 | 17.0 | 2750 | 1.6 | 972 | 13.7 |
65549 | 1000 | 21.3 | 5000 | 3.8 | 1050 | 13.7 |
66158 | 600 | 16.7 | 3000 | 1.5 | 2640 | 13.7 |
66159 | 600 | 16.7 | 3000 | 1.5 | 2670 | 13.7 |
66160 | 600 | 16.7 | 3000 | 1.5 | 2700 | 13.7 |
66161 | 600 | 16.7 | 3000 | 1.5 | 2730 | 13.7 |
66162 | 600 | 16.7 | 3000 | 1.5 | 2760 | 13.7 |
66163 | 600 | 16.7 | 3000 | 1.5 | 2790 | 13.7 |
66164 | 600 | 16.7 | 3000 | 1.5 | 2820 | 13.7 |
65815 | 800 | 22.2 | 4000 | 4.4 | 2360 | 13.5 |
65816 | 800 | 22.2 | 4000 | 4.4 | 2400 | 13.5 |
65817 | 800 | 22.2 | 4000 | 4.4 | 2440 | 13.5 |
65818 | 800 | 22.2 | 4000 | 4.4 | 2480 | 13.5 |
65819 | 800 | 22.2 | 4000 | 4.4 | 2520 | 13.5 |
65820 | 800 | 22.2 | 4000 | 4.4 | 2560 | 13.5 |
66302 | 500 | 16.3 | 2500 | 1.8 | 625 | 12.7 |
66303 | 500 | 16.3 | 2500 | 1.8 | 650 | 12.7 |
66304 | 500 | 16.3 | 2500 | 1.8 | 675 | 12.7 |
66305 | 500 | 16.3 | 2500 | 1.8 | 700 | 12.7 |
66306 | 500 | 16.3 | 2500 | 1.8 | 725 | 12.7 |
66307 | 500 | 16.3 | 2500 | 1.8 | 750 | 12.7 |
66308 | 500 | 16.3 | 2500 | 1.8 | 775 | 12.7 |
66309 | 500 | 16.3 | 2500 | 1.8 | 800 | 12.7 |
66310 | 500 | 16.3 | 2500 | 1.8 | 825 | 12.7 |
66157 | 600 | 16.7 | 3000 | 2.0 | 2610 | 12.7 |
65894 | 750 | 20.8 | 3750 | 4.3 | 2590 | 12.3 |
65602 | 950 | 20.2 | 4750 | 4.0 | 1081 | 12.2 |
66264 | 550 | 15.3 | 2750 | 1.6 | 2619 | 12.0 |
66265 | 550 | 15.3 | 2750 | 1.6 | 2646 | 12.0 |
66266 | 550 | 15.3 | 2750 | 1.6 | 2673 | 12.0 |
66267 | 550 | 15.3 | 2750 | 1.6 | 2700 | 12.0 |
66268 | 550 | 15.3 | 2750 | 1.6 | 2727 | 12.0 |
66269 | 550 | 15.3 | 2750 | 1.6 | 2754 | 12.0 |
66270 | 550 | 15.3 | 2750 | 1.6 | 2781 | 12.0 |
66271 | 550 | 15.3 | 2750 | 1.6 | 2808 | 12.0 |
66311 | 500 | 15.4 | 2500 | 1.8 | 850 | 11.8 |
66312 | 500 | 15.4 | 2500 | 1.8 | 875 | 11.8 |
66313 | 500 | 15.4 | 2500 | 1.8 | 900 | 11.8 |
66314 | 500 | 15.4 | 2500 | 1.8 | 925 | 11.8 |
66315 | 500 | 15.4 | 2500 | 1.8 | 950 | 11.8 |
66316 | 500 | 15.4 | 2500 | 1.8 | 975 | 11.8 |
65888 | 750 | 20.8 | 3750 | 4.7 | 2368 | 11.5 |
65889 | 750 | 20.8 | 3750 | 4.7 | 2405 | 11.5 |
65890 | 750 | 20.8 | 3750 | 4.7 | 2442 | 11.5 |
65891 | 750 | 20.8 | 3750 | 4.7 | 2479 | 11.5 |
65892 | 750 | 20.8 | 3750 | 4.7 | 2516 | 11.5 |
65893 | 750 | 20.8 | 3750 | 4.7 | 2553 | 11.5 |
65659 | 900 | 19.1 | 4500 | 4.2 | 1125 | 10.7 |
65973 | 700 | 19.4 | 3500 | 4.6 | 2590 | 10.3 |
66382 | 500 | 13.9 | 2500 | 1.8 | 2625 | 10.3 |
66383 | 500 | 13.9 | 2500 | 1.8 | 2650 | 10.3 |
66384 | 500 | 13.9 | 2500 | 1.8 | 2675 | 10.3 |
66385 | 500 | 13.9 | 2500 | 1.8 | 2700 | 10.3 |
66386 | 500 | 13.9 | 2500 | 1.8 | 2725 | 10.3 |
66387 | 500 | 13.9 | 2500 | 1.8 | 2750 | 10.3 |
66388 | 500 | 13.9 | 2500 | 1.8 | 2775 | 10.3 |
66389 | 500 | 13.9 | 2500 | 1.8 | 2800 | 10.3 |
66390 | 500 | 13.9 | 2500 | 1.8 | 2825 | 10.3 |
66189 | 550 | 18.0 | 2750 | 4.2 | 594 | 9.6 |
66301 | 500 | 16.3 | 2500 | 3.4 | 600 | 9.5 |
66326 | 500 | 15.4 | 2500 | 3.0 | 1225 | 9.4 |
65720 | 850 | 18.1 | 4250 | 4.5 | 1176 | 9.1 |
66061 | 650 | 18.1 | 3250 | 4.6 | 2592 | 8.8 |
65787 | 800 | 17.0 | 4000 | 4.8 | 1240 | 7.5 |
66381 | 500 | 13.9 | 2500 | 4.4 | 2600 | 5.1 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
65525 | 1050 | 29.2 | 5250 | 5.0 | 2340 | 19.3 |
65329 | 1250 | 26.6 | 6250 | 3.8 | 682 | 19.1 |
65330 | 1250 | 26.6 | 6250 | 3.8 | 744 | 19.1 |
65633 | 950 | 26.4 | 4750 | 3.7 | 2538 | 19.0 |
65366 | 1200 | 25.5 | 6000 | 3.9 | 660 | 17.7 |
65367 | 1200 | 25.5 | 6000 | 3.9 | 720 | 17.7 |
65368 | 1200 | 25.5 | 6000 | 3.9 | 780 | 17.7 |
65713 | 850 | 24.3 | 4250 | 3.6 | 882 | 17.0 |
65405 | 1150 | 24.5 | 5750 | 4.1 | 627 | 16.3 |
65406 | 1150 | 24.5 | 5750 | 4.1 | 684 | 16.3 |
65407 | 1150 | 24.5 | 5750 | 4.1 | 741 | 16.3 |
65408 | 1150 | 24.5 | 5750 | 4.1 | 798 | 16.3 |
65409 | 1150 | 24.5 | 5750 | 4.1 | 855 | 16.3 |
65448 | 1100 | 23.4 | 5500 | 4.3 | 660 | 14.9 |
65449 | 1100 | 23.4 | 5500 | 4.3 | 715 | 14.9 |
65450 | 1100 | 23.4 | 5500 | 4.3 | 770 | 14.9 |
65451 | 1100 | 23.4 | 5500 | 4.3 | 825 | 14.9 |
65452 | 1100 | 23.4 | 5500 | 4.3 | 880 | 14.9 |
65548 | 1000 | 21.3 | 5000 | 3.8 | 1000 | 13.7 |
65494 | 1050 | 22.3 | 5250 | 4.5 | 728 | 13.4 |
65495 | 1050 | 22.3 | 5250 | 4.5 | 780 | 13.4 |
65496 | 1050 | 22.3 | 5250 | 4.5 | 832 | 13.4 |
65497 | 1050 | 22.3 | 5250 | 4.5 | 884 | 13.4 |
65498 | 1050 | 22.3 | 5250 | 4.5 | 936 | 13.4 |
65601 | 950 | 20.2 | 4750 | 4.0 | 1034 | 12.2 |
65967 | 700 | 22.2 | 3500 | 5.0 | 2380 | 12.2 |
65543 | 1000 | 21.3 | 5000 | 4.7 | 750 | 11.9 |
65544 | 1000 | 21.3 | 5000 | 4.7 | 800 | 11.9 |
65545 | 1000 | 21.3 | 5000 | 4.7 | 850 | 11.9 |
65546 | 1000 | 21.3 | 5000 | 4.7 | 900 | 11.9 |
65547 | 1000 | 21.3 | 5000 | 4.7 | 950 | 11.9 |
65657 | 900 | 19.1 | 4500 | 4.2 | 1035 | 10.7 |
65658 | 900 | 19.1 | 4500 | 4.2 | 1080 | 10.7 |
65600 | 950 | 20.2 | 4750 | 4.8 | 987 | 10.5 |
65596 | 950 | 20.2 | 4750 | 4.9 | 799 | 10.3 |
65597 | 950 | 20.2 | 4750 | 4.9 | 846 | 10.3 |
65598 | 950 | 20.2 | 4750 | 4.9 | 893 | 10.3 |
65599 | 950 | 20.2 | 4750 | 4.9 | 940 | 10.3 |
65656 | 900 | 19.1 | 4500 | 4.8 | 990 | 9.6 |
65660 | 900 | 19.1 | 4500 | 4.8 | 1170 | 9.6 |
65968 | 700 | 19.4 | 3500 | 5.0 | 2415 | 9.4 |
65969 | 700 | 19.4 | 3500 | 5.0 | 2450 | 9.4 |
65970 | 700 | 19.4 | 3500 | 5.0 | 2485 | 9.4 |
65971 | 700 | 19.4 | 3500 | 5.0 | 2520 | 9.4 |
65972 | 700 | 19.4 | 3500 | 5.0 | 2555 | 9.4 |
65716 | 850 | 18.1 | 4250 | 4.5 | 1008 | 9.1 |
65717 | 850 | 18.1 | 4250 | 4.5 | 1050 | 9.1 |
65718 | 850 | 18.1 | 4250 | 4.5 | 1092 | 9.1 |
65719 | 850 | 18.1 | 4250 | 4.5 | 1134 | 9.1 |
66014 | 650 | 17.6 | 3250 | 4.3 | 1088 | 9.0 |
65721 | 850 | 18.1 | 4250 | 4.8 | 1218 | 8.4 |
65781 | 800 | 17.0 | 4000 | 4.8 | 1000 | 7.5 |
65782 | 800 | 17.0 | 4000 | 4.8 | 1040 | 7.5 |
65783 | 800 | 17.0 | 4000 | 4.8 | 1080 | 7.5 |
65784 | 800 | 17.0 | 4000 | 4.8 | 1120 | 7.5 |
65785 | 800 | 17.0 | 4000 | 4.8 | 1160 | 7.5 |
65786 | 800 | 17.0 | 4000 | 4.8 | 1200 | 7.5 |
66108 | 600 | 15.4 | 3000 | 5.0 | 1140 | 5.4 |
Overall score = score_ratio - 2 * repetitive DNA content