Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign77 - back to list
Summary
./analyse_probe_search_results : Tue Oct 18 14:44:26 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign77 assembly : NCBIM34 bias : 3prime chromosome : X id : 62 strand : 1 ------------- Design window length: 5001bp All jobs for probe design are successful - total: 87 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 1729 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 1729/1729 Putative probes that are unique : 117/1729 Putative probes exceeding selection criteria : 463/1729 (but not unique) Putative probes with successfully-picked primers: 580/580 Identified 231 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
60612 | 800 | 4000 | - | 3520 |
60669 | 750 | 3750 | - | 1443 |
60725 | 750 | 3750 | - | 3515 |
60726 | 750 | 3750 | - | 3552 |
60727 | 750 | 3750 | - | 3589 |
60787 | 700 | 3500 | - | 1470 |
60846 | 700 | 3500 | - | 3535 |
60847 | 700 | 3500 | - | 3570 |
60848 | 700 | 3500 | - | 3605 |
60849 | 700 | 3500 | - | 3640 |
60914 | 650 | 3250 | - | 1472 |
60915 | 650 | 3250 | - | 1504 |
60916 | 650 | 3250 | - | 1536 |
60978 | 650 | 3250 | - | 3520 |
60979 | 650 | 3250 | - | 3552 |
60980 | 650 | 3250 | - | 3584 |
60981 | 650 | 3250 | - | 3616 |
60982 | 650 | 3250 | - | 3648 |
60983 | 650 | 3250 | - | 3680 |
61053 | 600 | 3000 | - | 1470 |
61054 | 600 | 3000 | - | 1500 |
61055 | 600 | 3000 | - | 1530 |
61056 | 600 | 3000 | - | 1560 |
61057 | 600 | 3000 | - | 1590 |
61122 | 600 | 3000 | - | 3540 |
61123 | 600 | 3000 | - | 3570 |
61124 | 600 | 3000 | - | 3600 |
61125 | 600 | 3000 | - | 3630 |
61126 | 600 | 3000 | - | 3660 |
61127 | 600 | 3000 | - | 3690 |
61128 | 600 | 3000 | - | 3720 |
61129 | 600 | 3000 | - | 3750 |
61154 | 550 | 2750 | - | 81 |
61155 | 550 | 2750 | - | 108 |
61205 | 550 | 2750 | - | 1458 |
61206 | 550 | 2750 | - | 1485 |
61207 | 550 | 2750 | - | 1512 |
61208 | 550 | 2750 | - | 1539 |
61209 | 550 | 2750 | - | 1566 |
61210 | 550 | 2750 | - | 1593 |
61211 | 550 | 2750 | - | 1620 |
61282 | 550 | 2750 | - | 3537 |
61283 | 550 | 2750 | - | 3564 |
61284 | 550 | 2750 | - | 3591 |
61285 | 550 | 2750 | - | 3618 |
61286 | 550 | 2750 | - | 3645 |
61287 | 550 | 2750 | - | 3672 |
61288 | 550 | 2750 | - | 3699 |
61289 | 550 | 2750 | - | 3726 |
61290 | 550 | 2750 | - | 3753 |
61291 | 550 | 2750 | - | 3780 |
61292 | 550 | 2750 | - | 3807 |
61319 | 500 | 2500 | - | 75 |
61320 | 500 | 2500 | - | 100 |
61321 | 500 | 2500 | - | 125 |
61322 | 500 | 2500 | - | 150 |
61323 | 500 | 2500 | - | 175 |
61374 | 500 | 2500 | - | 1450 |
61375 | 500 | 2500 | - | 1475 |
61376 | 500 | 2500 | - | 1500 |
61377 | 500 | 2500 | - | 1525 |
61378 | 500 | 2500 | - | 1550 |
61379 | 500 | 2500 | - | 1575 |
61380 | 500 | 2500 | - | 1600 |
61381 | 500 | 2500 | - | 1625 |
61382 | 500 | 2500 | - | 1650 |
61383 | 500 | 2500 | - | 1675 |
61457 | 500 | 2500 | - | 3525 |
61458 | 500 | 2500 | - | 3550 |
61459 | 500 | 2500 | - | 3575 |
61460 | 500 | 2500 | - | 3600 |
61461 | 500 | 2500 | - | 3625 |
61462 | 500 | 2500 | - | 3650 |
61463 | 500 | 2500 | - | 3675 |
61464 | 500 | 2500 | - | 3700 |
61465 | 500 | 2500 | - | 3725 |
61466 | 500 | 2500 | - | 3750 |
61467 | 500 | 2500 | - | 3775 |
61468 | 500 | 2500 | - | 3800 |
61469 | 500 | 2500 | - | 3825 |
61470 | 500 | 2500 | - | 3850 |
60913 | 650 | 3250 | 0.2 | 1440 |
61052 | 600 | 3000 | 0.2 | 1440 |
61212 | 550 | 2750 | 0.5 | 1647 |
61156 | 550 | 2750 | 0.7 | 135 |
60786 | 700 | 3500 | 0.9 | 1435 |
61384 | 500 | 2500 | 1.2 | 1700 |
61007 | 600 | 3000 | 1.5 | 90 |
60788 | 700 | 3500 | 1.6 | 1505 |
61204 | 550 | 2750 | 1.8 | 1431 |
61373 | 500 | 2500 | 3.2 | 1425 |
60917 | 650 | 3250 | 3.7 | 1568 |
61324 | 500 | 2500 | 3.8 | 200 |
61058 | 600 | 3000 | 4.3 | 1620 |
60670 | 750 | 3750 | 4.8 | 1480 |
61213 | 550 | 2750 | 5.5 | 1674 |
60560 | 800 | 4000 | 5.9 | 1440 |
61385 | 500 | 2500 | 6.2 | 1725 |
60789 | 700 | 3500 | 6.6 | 1540 |
60918 | 650 | 3250 | 8.6 | 1600 |
61059 | 600 | 3000 | 9.3 | 1650 |
60671 | 750 | 3750 | 9.7 | 1517 |
61214 | 550 | 2750 | 10.4 | 1701 |
60561 | 800 | 4000 | 10.8 | 1480 |
61386 | 500 | 2500 | 11.2 | 1750 |
60459 | 850 | 4250 | 11.4 | 1428 |
60790 | 700 | 3500 | 11.6 | 1575 |
60919 | 650 | 3250 | 13.5 | 1632 |
61060 | 600 | 3000 | 14.3 | 1680 |
60672 | 750 | 3750 | 14.7 | 1554 |
61215 | 550 | 2750 | 15.3 | 1728 |
61387 | 500 | 2500 | 16.2 | 1775 |
60791 | 700 | 3500 | 16.6 | 1610 |
60920 | 650 | 3250 | 18.5 | 1664 |
61061 | 600 | 3000 | 19.3 | 1710 |
61216 | 550 | 2750 | 20.2 | 1755 |
61388 | 500 | 2500 | 21.2 | 1800 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
59814 | 1300 | 35.1 | 6500 | 1.1 | 2990 | 33.0 |
59815 | 1300 | 35.1 | 6500 | 1.1 | 3055 | 33.0 |
59816 | 1300 | 34.8 | 6500 | 1.1 | 3120 | 32.6 |
59817 | 1300 | 34.8 | 6500 | 1.1 | 3185 | 32.6 |
59941 | 1200 | 32.1 | 6000 | - | 3300 | 32.1 |
59807 | 1300 | 35.1 | 6500 | 1.7 | 2535 | 31.8 |
59808 | 1300 | 35.1 | 6500 | 1.7 | 2600 | 31.8 |
59809 | 1300 | 35.1 | 6500 | 1.7 | 2665 | 31.8 |
59810 | 1300 | 35.1 | 6500 | 1.7 | 2730 | 31.8 |
59811 | 1300 | 35.1 | 6500 | 1.7 | 2795 | 31.8 |
59812 | 1300 | 35.1 | 6500 | 1.7 | 2860 | 31.8 |
59813 | 1300 | 35.1 | 6500 | 1.7 | 2925 | 31.8 |
59873 | 1250 | 33.8 | 6250 | 1.1 | 2976 | 31.5 |
60008 | 1150 | 30.7 | 5750 | - | 3306 | 30.7 |
59869 | 1250 | 33.8 | 6250 | 1.8 | 2728 | 30.3 |
59870 | 1250 | 33.8 | 6250 | 1.8 | 2790 | 30.3 |
59871 | 1250 | 33.8 | 6250 | 1.8 | 2852 | 30.3 |
59872 | 1250 | 33.8 | 6250 | 1.8 | 2914 | 30.3 |
59936 | 1200 | 32.4 | 6000 | 1.2 | 3000 | 30.1 |
60009 | 1150 | 30.7 | 5750 | 0.5 | 3363 | 29.7 |
60078 | 1100 | 29.4 | 5500 | - | 3300 | 29.4 |
60079 | 1100 | 29.4 | 5500 | - | 3355 | 29.4 |
59935 | 1200 | 32.4 | 6000 | 1.7 | 2940 | 29.1 |
60080 | 1100 | 29.4 | 5500 | 0.3 | 3410 | 28.9 |
59878 | 1250 | 33.4 | 6250 | 2.3 | 3286 | 28.8 |
60002 | 1150 | 31.1 | 5750 | 1.2 | 2964 | 28.6 |
60003 | 1150 | 31.1 | 5750 | 1.2 | 3021 | 28.6 |
60152 | 1050 | 29.5 | 5250 | 0.6 | 3276 | 28.4 |
60231 | 1000 | 28.1 | 5000 | - | 3300 | 28.1 |
60232 | 1000 | 28.1 | 5000 | - | 3350 | 28.1 |
60153 | 1050 | 28.1 | 5250 | - | 3328 | 28.1 |
60154 | 1050 | 28.1 | 5250 | - | 3380 | 28.1 |
60155 | 1050 | 28.1 | 5250 | - | 3432 | 28.1 |
60072 | 1100 | 29.7 | 5500 | 1.3 | 2970 | 27.2 |
60073 | 1100 | 29.7 | 5500 | 1.3 | 3025 | 27.2 |
60074 | 1100 | 29.7 | 5500 | 1.3 | 3080 | 27.2 |
60233 | 1000 | 26.7 | 5000 | - | 3400 | 26.7 |
60234 | 1000 | 26.7 | 5000 | - | 3450 | 26.7 |
60235 | 1000 | 26.7 | 5000 | - | 3500 | 26.7 |
60316 | 950 | 26.7 | 4750 | - | 3290 | 26.7 |
60317 | 950 | 26.7 | 4750 | - | 3337 | 26.7 |
60318 | 950 | 26.7 | 4750 | - | 3384 | 26.7 |
59928 | 1200 | 32.4 | 6000 | 3.0 | 2520 | 26.4 |
60064 | 1100 | 30.9 | 5500 | 2.4 | 2530 | 26.2 |
60146 | 1050 | 28.4 | 5250 | 1.3 | 2964 | 25.7 |
60147 | 1050 | 28.4 | 5250 | 1.3 | 3016 | 25.7 |
60148 | 1050 | 28.4 | 5250 | 1.3 | 3068 | 25.7 |
60149 | 1050 | 28.4 | 5250 | 1.3 | 3120 | 25.7 |
60150 | 1050 | 28.4 | 5250 | 1.3 | 3172 | 25.7 |
59818 | 1300 | 34.2 | 6500 | 4.4 | 3250 | 25.4 |
60319 | 950 | 25.4 | 4750 | - | 3431 | 25.4 |
60320 | 950 | 25.4 | 4750 | - | 3478 | 25.4 |
60321 | 950 | 25.4 | 4750 | - | 3525 | 25.4 |
60406 | 900 | 25.3 | 4500 | - | 3285 | 25.3 |
60407 | 900 | 25.3 | 4500 | - | 3330 | 25.3 |
60408 | 900 | 25.3 | 4500 | - | 3375 | 25.3 |
60409 | 900 | 25.3 | 4500 | - | 3420 | 25.3 |
60410 | 900 | 25.3 | 4500 | - | 3465 | 25.3 |
60613 | 800 | 24.7 | 4000 | - | 3560 | 24.7 |
60224 | 1000 | 27.0 | 5000 | 1.4 | 2950 | 24.2 |
60225 | 1000 | 27.0 | 5000 | 1.4 | 3000 | 24.2 |
60226 | 1000 | 27.0 | 5000 | 1.4 | 3050 | 24.2 |
60227 | 1000 | 27.0 | 5000 | 1.4 | 3100 | 24.2 |
60228 | 1000 | 27.0 | 5000 | 1.4 | 3150 | 24.2 |
60229 | 1000 | 27.0 | 5000 | 1.4 | 3200 | 24.2 |
60411 | 900 | 24.1 | 4500 | - | 3510 | 24.1 |
60412 | 900 | 24.1 | 4500 | - | 3555 | 24.1 |
60413 | 900 | 24.1 | 4500 | - | 3600 | 24.1 |
60504 | 850 | 23.9 | 4250 | - | 3318 | 23.9 |
60505 | 850 | 23.9 | 4250 | - | 3360 | 23.9 |
60506 | 850 | 23.9 | 4250 | - | 3402 | 23.9 |
60507 | 850 | 23.9 | 4250 | - | 3444 | 23.9 |
60508 | 850 | 23.9 | 4250 | - | 3486 | 23.9 |
60156 | 1050 | 28.1 | 5250 | 2.6 | 3484 | 22.9 |
59994 | 1150 | 31.1 | 5750 | 4.2 | 2508 | 22.7 |
60309 | 950 | 25.7 | 4750 | 1.5 | 2961 | 22.7 |
60310 | 950 | 25.7 | 4750 | 1.5 | 3008 | 22.7 |
60311 | 950 | 25.7 | 4750 | 1.5 | 3055 | 22.7 |
60312 | 950 | 25.7 | 4750 | 1.5 | 3102 | 22.7 |
60313 | 950 | 25.7 | 4750 | 1.5 | 3149 | 22.7 |
60314 | 950 | 25.7 | 4750 | 1.5 | 3196 | 22.7 |
60315 | 950 | 25.7 | 4750 | 1.5 | 3243 | 22.7 |
60509 | 850 | 22.7 | 4250 | - | 3528 | 22.7 |
60510 | 850 | 22.7 | 4250 | - | 3570 | 22.7 |
60511 | 850 | 22.7 | 4250 | - | 3612 | 22.7 |
60512 | 850 | 22.7 | 4250 | - | 3654 | 22.7 |
60607 | 800 | 22.5 | 4000 | - | 3320 | 22.5 |
60608 | 800 | 22.5 | 4000 | - | 3360 | 22.5 |
60609 | 800 | 22.5 | 4000 | - | 3400 | 22.5 |
60610 | 800 | 22.5 | 4000 | - | 3440 | 22.5 |
60611 | 800 | 22.5 | 4000 | - | 3480 | 22.5 |
60503 | 850 | 23.9 | 4250 | 0.7 | 3276 | 22.5 |
60322 | 950 | 25.4 | 4750 | 1.6 | 3572 | 22.2 |
60606 | 800 | 22.5 | 4000 | 0.2 | 3280 | 22.0 |
59942 | 1200 | 30.6 | 6000 | 4.4 | 3360 | 21.8 |
60614 | 800 | 21.4 | 4000 | - | 3600 | 21.4 |
60615 | 800 | 21.4 | 4000 | - | 3640 | 21.4 |
60616 | 800 | 21.4 | 4000 | - | 3680 | 21.4 |
60399 | 900 | 24.3 | 4500 | 1.6 | 2970 | 21.2 |
60400 | 900 | 24.3 | 4500 | 1.6 | 3015 | 21.2 |
60401 | 900 | 24.3 | 4500 | 1.6 | 3060 | 21.2 |
60402 | 900 | 24.3 | 4500 | 1.6 | 3105 | 21.2 |
60403 | 900 | 24.3 | 4500 | 1.6 | 3150 | 21.2 |
60404 | 900 | 24.3 | 4500 | 1.6 | 3195 | 21.2 |
60405 | 900 | 24.3 | 4500 | 1.6 | 3240 | 21.2 |
60719 | 750 | 21.1 | 3750 | - | 3293 | 21.1 |
60720 | 750 | 21.1 | 3750 | - | 3330 | 21.1 |
60721 | 750 | 21.1 | 3750 | - | 3367 | 21.1 |
60722 | 750 | 21.1 | 3750 | - | 3404 | 21.1 |
60723 | 750 | 21.1 | 3750 | - | 3441 | 21.1 |
60724 | 750 | 21.1 | 3750 | - | 3478 | 21.1 |
60818 | 700 | 23.2 | 3500 | 1.1 | 2555 | 20.9 |
60845 | 700 | 20.8 | 3500 | - | 3500 | 20.8 |
60984 | 650 | 20.1 | 3250 | - | 3712 | 20.1 |
60728 | 750 | 20.1 | 3750 | - | 3626 | 20.1 |
60729 | 750 | 20.1 | 3750 | - | 3663 | 20.1 |
60730 | 750 | 20.1 | 3750 | - | 3700 | 20.1 |
60731 | 750 | 20.1 | 3750 | - | 3737 | 20.1 |
61121 | 600 | 19.9 | 3000 | - | 3510 | 19.9 |
60496 | 850 | 23.0 | 4250 | 1.6 | 2982 | 19.7 |
60497 | 850 | 23.0 | 4250 | 1.6 | 3024 | 19.7 |
60498 | 850 | 23.0 | 4250 | 1.6 | 3066 | 19.7 |
60499 | 850 | 23.0 | 4250 | 1.6 | 3108 | 19.7 |
60500 | 850 | 23.0 | 4250 | 1.6 | 3150 | 19.7 |
60501 | 850 | 23.0 | 4250 | 1.6 | 3192 | 19.7 |
60502 | 850 | 23.0 | 4250 | 1.6 | 3234 | 19.7 |
60839 | 700 | 19.7 | 3500 | - | 3290 | 19.7 |
60840 | 700 | 19.7 | 3500 | - | 3325 | 19.7 |
60841 | 700 | 19.7 | 3500 | - | 3360 | 19.7 |
60842 | 700 | 19.7 | 3500 | - | 3395 | 19.7 |
60843 | 700 | 19.7 | 3500 | - | 3430 | 19.7 |
60844 | 700 | 19.7 | 3500 | - | 3465 | 19.7 |
60948 | 650 | 21.5 | 3250 | 1.2 | 2560 | 19.1 |
60949 | 650 | 21.5 | 3250 | 1.2 | 2592 | 19.1 |
60850 | 700 | 18.7 | 3500 | - | 3675 | 18.7 |
60851 | 700 | 18.7 | 3500 | - | 3710 | 18.7 |
60852 | 700 | 18.7 | 3500 | - | 3745 | 18.7 |
60853 | 700 | 18.7 | 3500 | - | 3780 | 18.7 |
60971 | 650 | 18.3 | 3250 | - | 3296 | 18.3 |
60972 | 650 | 18.3 | 3250 | - | 3328 | 18.3 |
60973 | 650 | 18.3 | 3250 | - | 3360 | 18.3 |
60974 | 650 | 18.3 | 3250 | - | 3392 | 18.3 |
60975 | 650 | 18.3 | 3250 | - | 3424 | 18.3 |
60976 | 650 | 18.3 | 3250 | - | 3456 | 18.3 |
60977 | 650 | 18.3 | 3250 | - | 3488 | 18.3 |
61281 | 550 | 18.2 | 2750 | - | 3510 | 18.2 |
60617 | 800 | 21.4 | 4000 | 1.6 | 3720 | 18.1 |
60698 | 750 | 24.8 | 3750 | 3.5 | 2516 | 17.9 |
60236 | 1000 | 26.3 | 5000 | 4.3 | 3550 | 17.7 |
60985 | 650 | 17.4 | 3250 | - | 3744 | 17.4 |
60986 | 650 | 17.4 | 3250 | - | 3776 | 17.4 |
60987 | 650 | 17.4 | 3250 | - | 3808 | 17.4 |
60988 | 650 | 17.4 | 3250 | - | 3840 | 17.4 |
60947 | 650 | 21.5 | 3250 | 2.2 | 2528 | 17.2 |
61089 | 600 | 19.9 | 3000 | 1.3 | 2550 | 17.2 |
61090 | 600 | 19.9 | 3000 | 1.3 | 2580 | 17.2 |
61091 | 600 | 19.9 | 3000 | 1.3 | 2610 | 17.2 |
61092 | 600 | 19.9 | 3000 | 1.3 | 2640 | 17.2 |
61114 | 600 | 16.9 | 3000 | - | 3300 | 16.9 |
61115 | 600 | 16.9 | 3000 | - | 3330 | 16.9 |
61116 | 600 | 16.9 | 3000 | - | 3360 | 16.9 |
61117 | 600 | 16.9 | 3000 | - | 3390 | 16.9 |
61118 | 600 | 16.9 | 3000 | - | 3420 | 16.9 |
61119 | 600 | 16.9 | 3000 | - | 3450 | 16.9 |
61120 | 600 | 16.9 | 3000 | - | 3480 | 16.9 |
61093 | 600 | 19.9 | 3000 | 1.7 | 2670 | 16.5 |
60854 | 700 | 18.7 | 3500 | 1.1 | 3815 | 16.4 |
61130 | 600 | 16.0 | 3000 | - | 3780 | 16.0 |
61131 | 600 | 16.0 | 3000 | - | 3810 | 16.0 |
61132 | 600 | 16.0 | 3000 | - | 3840 | 16.0 |
61133 | 600 | 16.0 | 3000 | - | 3870 | 16.0 |
61134 | 600 | 16.0 | 3000 | - | 3900 | 16.0 |
60668 | 750 | 25.0 | 3750 | 4.7 | 1406 | 15.7 |
60414 | 900 | 24.1 | 4500 | 4.2 | 3645 | 15.6 |
60732 | 750 | 20.1 | 3750 | 2.3 | 3774 | 15.5 |
61006 | 600 | 15.5 | 3000 | - | 60 | 15.5 |
61273 | 550 | 15.4 | 2750 | - | 3294 | 15.4 |
61274 | 550 | 15.4 | 2750 | - | 3321 | 15.4 |
61275 | 550 | 15.4 | 2750 | - | 3348 | 15.4 |
61276 | 550 | 15.4 | 2750 | - | 3375 | 15.4 |
61277 | 550 | 15.4 | 2750 | - | 3402 | 15.4 |
61278 | 550 | 15.4 | 2750 | - | 3429 | 15.4 |
61279 | 550 | 15.4 | 2750 | - | 3456 | 15.4 |
61280 | 550 | 15.4 | 2750 | - | 3483 | 15.4 |
61245 | 550 | 18.2 | 2750 | 1.5 | 2538 | 15.3 |
61246 | 550 | 18.2 | 2750 | 1.5 | 2565 | 15.3 |
61247 | 550 | 18.2 | 2750 | 1.5 | 2592 | 15.3 |
61248 | 550 | 18.2 | 2750 | 1.5 | 2619 | 15.3 |
61249 | 550 | 18.2 | 2750 | 1.5 | 2646 | 15.3 |
61250 | 550 | 18.2 | 2750 | 1.5 | 2673 | 15.3 |
61251 | 550 | 18.2 | 2750 | 1.5 | 2700 | 15.3 |
61456 | 500 | 14.9 | 2500 | - | 3500 | 14.9 |
61293 | 550 | 14.7 | 2750 | - | 3834 | 14.7 |
61294 | 550 | 14.7 | 2750 | - | 3861 | 14.7 |
61295 | 550 | 14.7 | 2750 | - | 3888 | 14.7 |
61296 | 550 | 14.7 | 2750 | - | 3915 | 14.7 |
61297 | 550 | 14.7 | 2750 | - | 3942 | 14.7 |
61448 | 500 | 14.0 | 2500 | - | 3300 | 14.0 |
61449 | 500 | 14.0 | 2500 | - | 3325 | 14.0 |
61450 | 500 | 14.0 | 2500 | - | 3350 | 14.0 |
61451 | 500 | 14.0 | 2500 | - | 3375 | 14.0 |
61452 | 500 | 14.0 | 2500 | - | 3400 | 14.0 |
61453 | 500 | 14.0 | 2500 | - | 3425 | 14.0 |
61454 | 500 | 14.0 | 2500 | - | 3450 | 14.0 |
61455 | 500 | 14.0 | 2500 | - | 3475 | 14.0 |
61471 | 500 | 13.4 | 2500 | - | 3875 | 13.4 |
61472 | 500 | 13.4 | 2500 | - | 3900 | 13.4 |
61473 | 500 | 13.4 | 2500 | - | 3925 | 13.4 |
61474 | 500 | 13.4 | 2500 | - | 3950 | 13.4 |
61475 | 500 | 13.4 | 2500 | - | 3975 | 13.4 |
61476 | 500 | 13.4 | 2500 | - | 4000 | 13.4 |
61418 | 500 | 16.6 | 2500 | 1.6 | 2550 | 13.4 |
61419 | 500 | 16.6 | 2500 | 1.6 | 2575 | 13.4 |
61420 | 500 | 16.6 | 2500 | 1.6 | 2600 | 13.4 |
61421 | 500 | 16.6 | 2500 | 1.6 | 2625 | 13.4 |
61422 | 500 | 16.6 | 2500 | 1.6 | 2650 | 13.4 |
61423 | 500 | 16.6 | 2500 | 1.6 | 2675 | 13.4 |
61424 | 500 | 16.6 | 2500 | 1.6 | 2700 | 13.4 |
61425 | 500 | 16.6 | 2500 | 1.6 | 2725 | 13.4 |
61426 | 500 | 16.6 | 2500 | 1.6 | 2750 | 13.4 |
60989 | 650 | 17.4 | 3250 | 2.3 | 3872 | 12.8 |
60869 | 650 | 12.5 | 3250 | 0.2 | 32 | 12.2 |
61153 | 550 | 12.1 | 2750 | - | 54 | 12.1 |
61005 | 600 | 11.5 | 3000 | - | 30 | 11.5 |
61447 | 500 | 14.0 | 2500 | 1.4 | 3275 | 11.2 |
60868 | 650 | 10.8 | 3250 | - | 0 | 10.8 |
61318 | 500 | 10.7 | 2500 | - | 50 | 10.7 |
61152 | 550 | 10.4 | 2750 | - | 27 | 10.4 |
61298 | 550 | 14.7 | 2750 | 2.2 | 3969 | 10.3 |
61135 | 600 | 16.0 | 3000 | 3.8 | 3930 | 8.4 |
61477 | 500 | 13.4 | 2500 | 3.6 | 4025 | 6.2 |
60745 | 700 | 11.6 | 3500 | 2.7 | 0 | 6.2 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
59874 | 1250 | 33.8 | 6250 | 1.1 | 3038 | 31.5 |
59875 | 1250 | 33.8 | 6250 | 1.1 | 3100 | 31.5 |
59876 | 1250 | 33.4 | 6250 | 1.1 | 3162 | 31.2 |
59877 | 1250 | 33.4 | 6250 | 1.1 | 3224 | 31.2 |
59866 | 1250 | 33.8 | 6250 | 1.8 | 2542 | 30.3 |
59867 | 1250 | 33.8 | 6250 | 1.8 | 2604 | 30.3 |
59868 | 1250 | 33.8 | 6250 | 1.8 | 2666 | 30.3 |
59937 | 1200 | 32.4 | 6000 | 1.2 | 3060 | 30.1 |
59938 | 1200 | 32.4 | 6000 | 1.2 | 3120 | 30.1 |
59939 | 1200 | 32.1 | 6000 | 1.2 | 3180 | 29.8 |
59940 | 1200 | 32.1 | 6000 | 1.2 | 3240 | 29.8 |
59929 | 1200 | 32.4 | 6000 | 1.8 | 2580 | 28.8 |
59930 | 1200 | 32.4 | 6000 | 1.8 | 2640 | 28.8 |
59931 | 1200 | 32.4 | 6000 | 1.8 | 2700 | 28.8 |
59932 | 1200 | 32.4 | 6000 | 1.8 | 2760 | 28.8 |
59933 | 1200 | 32.4 | 6000 | 1.8 | 2820 | 28.8 |
59934 | 1200 | 32.4 | 6000 | 1.8 | 2880 | 28.8 |
60004 | 1150 | 31.1 | 5750 | 1.2 | 3078 | 28.6 |
60005 | 1150 | 31.1 | 5750 | 1.2 | 3135 | 28.6 |
60006 | 1150 | 31.1 | 5750 | 1.2 | 3192 | 28.6 |
60007 | 1150 | 30.7 | 5750 | 1.2 | 3249 | 28.3 |
59995 | 1150 | 31.1 | 5750 | 1.9 | 2565 | 27.3 |
59996 | 1150 | 31.1 | 5750 | 1.9 | 2622 | 27.3 |
59997 | 1150 | 31.1 | 5750 | 1.9 | 2679 | 27.3 |
59998 | 1150 | 31.1 | 5750 | 1.9 | 2736 | 27.3 |
59999 | 1150 | 31.1 | 5750 | 1.9 | 2793 | 27.3 |
60000 | 1150 | 31.1 | 5750 | 1.9 | 2850 | 27.3 |
60001 | 1150 | 31.1 | 5750 | 1.9 | 2907 | 27.3 |
60075 | 1100 | 29.7 | 5500 | 1.3 | 3135 | 27.2 |
60076 | 1100 | 29.7 | 5500 | 1.3 | 3190 | 27.2 |
60077 | 1100 | 29.7 | 5500 | 1.3 | 3245 | 27.2 |
60300 | 950 | 31.0 | 4750 | 2.3 | 2538 | 26.4 |
60065 | 1100 | 29.7 | 5500 | 2.0 | 2585 | 25.7 |
60066 | 1100 | 29.7 | 5500 | 2.0 | 2640 | 25.7 |
60067 | 1100 | 29.7 | 5500 | 2.0 | 2695 | 25.7 |
60068 | 1100 | 29.7 | 5500 | 2.0 | 2750 | 25.7 |
60069 | 1100 | 29.7 | 5500 | 2.0 | 2805 | 25.7 |
60070 | 1100 | 29.7 | 5500 | 2.0 | 2860 | 25.7 |
60071 | 1100 | 29.7 | 5500 | 2.0 | 2915 | 25.7 |
60151 | 1050 | 28.4 | 5250 | 1.3 | 3224 | 25.7 |
60138 | 1050 | 29.5 | 5250 | 2.1 | 2548 | 25.3 |
60216 | 1000 | 29.1 | 5000 | 2.2 | 2550 | 24.7 |
60390 | 900 | 29.4 | 4500 | 2.4 | 2565 | 24.5 |
60391 | 900 | 29.4 | 4500 | 2.4 | 2610 | 24.5 |
60230 | 1000 | 27.0 | 5000 | 1.4 | 3250 | 24.2 |
60139 | 1050 | 28.4 | 5250 | 2.1 | 2600 | 24.2 |
60140 | 1050 | 28.4 | 5250 | 2.1 | 2652 | 24.2 |
60141 | 1050 | 28.4 | 5250 | 2.1 | 2704 | 24.2 |
60142 | 1050 | 28.4 | 5250 | 2.1 | 2756 | 24.2 |
60143 | 1050 | 28.4 | 5250 | 2.1 | 2808 | 24.2 |
60144 | 1050 | 28.4 | 5250 | 2.1 | 2860 | 24.2 |
60145 | 1050 | 28.4 | 5250 | 2.1 | 2912 | 24.2 |
60301 | 950 | 28.8 | 4750 | 2.3 | 2585 | 24.2 |
60217 | 1000 | 28.1 | 5000 | 2.2 | 2600 | 23.7 |
60218 | 1000 | 27.0 | 5000 | 2.2 | 2650 | 22.6 |
60219 | 1000 | 27.0 | 5000 | 2.2 | 2700 | 22.6 |
60220 | 1000 | 27.0 | 5000 | 2.2 | 2750 | 22.6 |
60221 | 1000 | 27.0 | 5000 | 2.2 | 2800 | 22.6 |
60222 | 1000 | 27.0 | 5000 | 2.2 | 2850 | 22.6 |
60223 | 1000 | 27.0 | 5000 | 2.2 | 2900 | 22.6 |
60486 | 850 | 27.8 | 4250 | 2.6 | 2562 | 22.6 |
60487 | 850 | 27.8 | 4250 | 2.6 | 2604 | 22.6 |
60488 | 850 | 27.8 | 4250 | 2.6 | 2646 | 22.6 |
60302 | 950 | 26.7 | 4750 | 2.3 | 2632 | 22.1 |
60303 | 950 | 26.7 | 4750 | 2.3 | 2679 | 22.1 |
60389 | 900 | 29.4 | 4500 | 4.0 | 2520 | 21.4 |
60304 | 950 | 25.7 | 4750 | 2.3 | 2726 | 21.0 |
60305 | 950 | 25.7 | 4750 | 2.3 | 2773 | 21.0 |
60306 | 950 | 25.7 | 4750 | 2.3 | 2820 | 21.0 |
60307 | 950 | 25.7 | 4750 | 2.3 | 2867 | 21.0 |
60308 | 950 | 25.7 | 4750 | 2.3 | 2914 | 21.0 |
60392 | 900 | 25.6 | 4500 | 2.4 | 2655 | 20.7 |
60588 | 800 | 26.1 | 4000 | 2.8 | 2560 | 20.6 |
60589 | 800 | 26.1 | 4000 | 2.8 | 2600 | 20.6 |
60590 | 800 | 26.1 | 4000 | 2.8 | 2640 | 20.6 |
60591 | 800 | 26.1 | 4000 | 2.8 | 2680 | 20.6 |
60592 | 800 | 26.1 | 4000 | 2.8 | 2720 | 20.6 |
60489 | 850 | 25.8 | 4250 | 2.6 | 2688 | 20.6 |
60393 | 900 | 25.3 | 4500 | 2.4 | 2700 | 20.4 |
60394 | 900 | 24.3 | 4500 | 2.4 | 2745 | 19.4 |
60395 | 900 | 24.3 | 4500 | 2.4 | 2790 | 19.4 |
60396 | 900 | 24.3 | 4500 | 2.4 | 2835 | 19.4 |
60397 | 900 | 24.3 | 4500 | 2.4 | 2880 | 19.4 |
60398 | 900 | 24.3 | 4500 | 2.4 | 2925 | 19.4 |
60485 | 850 | 27.8 | 4250 | 4.2 | 2520 | 19.3 |
60699 | 750 | 24.7 | 3750 | 2.9 | 2553 | 18.8 |
60490 | 850 | 23.9 | 4250 | 2.6 | 2730 | 18.7 |
60491 | 850 | 23.9 | 4250 | 2.6 | 2772 | 18.7 |
60700 | 750 | 24.5 | 3750 | 2.9 | 2590 | 18.6 |
60701 | 750 | 24.5 | 3750 | 2.9 | 2627 | 18.6 |
60702 | 750 | 24.5 | 3750 | 2.9 | 2664 | 18.6 |
60703 | 750 | 24.5 | 3750 | 2.9 | 2701 | 18.6 |
60704 | 750 | 24.5 | 3750 | 2.9 | 2738 | 18.6 |
60705 | 750 | 24.5 | 3750 | 2.9 | 2775 | 18.6 |
60495 | 850 | 23.0 | 4250 | 2.4 | 2940 | 18.3 |
60598 | 800 | 21.6 | 4000 | 1.8 | 2960 | 18.1 |
60599 | 800 | 21.6 | 4000 | 1.8 | 3000 | 18.1 |
60600 | 800 | 21.6 | 4000 | 1.8 | 3040 | 18.1 |
60601 | 800 | 21.6 | 4000 | 1.8 | 3080 | 18.1 |
60602 | 800 | 21.6 | 4000 | 1.8 | 3120 | 18.1 |
60603 | 800 | 21.6 | 4000 | 1.8 | 3160 | 18.1 |
60604 | 800 | 21.6 | 4000 | 1.8 | 3200 | 18.1 |
60605 | 800 | 21.6 | 4000 | 1.8 | 3240 | 18.1 |
60492 | 850 | 23.0 | 4250 | 2.6 | 2814 | 17.8 |
60493 | 850 | 23.0 | 4250 | 2.6 | 2856 | 17.8 |
60494 | 850 | 23.0 | 4250 | 2.6 | 2898 | 17.8 |
60587 | 800 | 26.3 | 4000 | 4.5 | 2520 | 17.3 |
60593 | 800 | 22.7 | 4000 | 2.8 | 2760 | 17.2 |
60950 | 650 | 21.5 | 3250 | 2.2 | 2624 | 17.2 |
60594 | 800 | 22.5 | 4000 | 2.8 | 2800 | 17.0 |
60817 | 700 | 23.2 | 3500 | 3.1 | 2520 | 16.9 |
60819 | 700 | 23.0 | 3500 | 3.1 | 2590 | 16.7 |
60820 | 700 | 22.9 | 3500 | 3.1 | 2625 | 16.6 |
60821 | 700 | 22.9 | 3500 | 3.1 | 2660 | 16.6 |
60822 | 700 | 22.9 | 3500 | 3.1 | 2695 | 16.6 |
60823 | 700 | 22.9 | 3500 | 3.1 | 2730 | 16.6 |
60824 | 700 | 22.9 | 3500 | 3.1 | 2765 | 16.6 |
60825 | 700 | 22.9 | 3500 | 3.1 | 2800 | 16.6 |
60710 | 750 | 20.3 | 3750 | 1.9 | 2960 | 16.5 |
60711 | 750 | 20.3 | 3750 | 1.9 | 2997 | 16.5 |
60712 | 750 | 20.3 | 3750 | 1.9 | 3034 | 16.5 |
60713 | 750 | 20.3 | 3750 | 1.9 | 3071 | 16.5 |
60714 | 750 | 20.3 | 3750 | 1.9 | 3108 | 16.5 |
60715 | 750 | 20.3 | 3750 | 1.9 | 3145 | 16.5 |
60716 | 750 | 20.3 | 3750 | 1.9 | 3182 | 16.5 |
60717 | 750 | 20.3 | 3750 | 1.9 | 3219 | 16.5 |
60718 | 750 | 20.3 | 3750 | 1.9 | 3256 | 16.5 |
60595 | 800 | 21.9 | 4000 | 2.8 | 2840 | 16.4 |
60596 | 800 | 21.6 | 4000 | 2.8 | 2880 | 16.1 |
60597 | 800 | 21.6 | 4000 | 2.8 | 2920 | 16.1 |
60706 | 750 | 21.3 | 3750 | 2.9 | 2812 | 15.4 |
60707 | 750 | 21.1 | 3750 | 2.9 | 2849 | 15.2 |
60826 | 700 | 21.2 | 3500 | 3.1 | 2835 | 14.9 |
60830 | 700 | 18.9 | 3500 | 2.0 | 2975 | 14.9 |
60831 | 700 | 18.9 | 3500 | 2.0 | 3010 | 14.9 |
60832 | 700 | 18.9 | 3500 | 2.0 | 3045 | 14.9 |
60833 | 700 | 18.9 | 3500 | 2.0 | 3080 | 14.9 |
60834 | 700 | 18.9 | 3500 | 2.0 | 3115 | 14.9 |
60835 | 700 | 18.9 | 3500 | 2.0 | 3150 | 14.9 |
60836 | 700 | 18.9 | 3500 | 2.0 | 3185 | 14.9 |
60837 | 700 | 18.9 | 3500 | 2.0 | 3220 | 14.9 |
60838 | 700 | 18.9 | 3500 | 2.0 | 3255 | 14.9 |
60708 | 750 | 20.5 | 3750 | 2.9 | 2886 | 14.6 |
60951 | 650 | 21.4 | 3250 | 3.4 | 2656 | 14.6 |
60952 | 650 | 21.2 | 3250 | 3.4 | 2688 | 14.5 |
60953 | 650 | 21.2 | 3250 | 3.4 | 2720 | 14.5 |
60954 | 650 | 21.2 | 3250 | 3.4 | 2752 | 14.5 |
60955 | 650 | 21.2 | 3250 | 3.4 | 2784 | 14.5 |
60956 | 650 | 21.2 | 3250 | 3.4 | 2816 | 14.5 |
60957 | 650 | 21.2 | 3250 | 3.4 | 2848 | 14.5 |
60958 | 650 | 21.2 | 3250 | 3.4 | 2880 | 14.5 |
60709 | 750 | 20.3 | 3750 | 2.9 | 2923 | 14.4 |
60961 | 650 | 18.3 | 3250 | 2.2 | 2976 | 14.0 |
60513 | 850 | 22.7 | 4250 | 4.6 | 3696 | 13.6 |
60829 | 700 | 19.1 | 3500 | 2.9 | 2940 | 13.4 |
60827 | 700 | 19.7 | 3500 | 3.1 | 2870 | 13.4 |
60828 | 700 | 19.7 | 3500 | 3.1 | 2905 | 13.4 |
60960 | 650 | 18.3 | 3250 | 2.5 | 2944 | 13.3 |
60962 | 650 | 17.6 | 3250 | 2.2 | 3008 | 13.3 |
60963 | 650 | 17.6 | 3250 | 2.2 | 3040 | 13.3 |
60964 | 650 | 17.6 | 3250 | 2.2 | 3072 | 13.3 |
60965 | 650 | 17.6 | 3250 | 2.2 | 3104 | 13.3 |
60966 | 650 | 17.6 | 3250 | 2.2 | 3136 | 13.3 |
60967 | 650 | 17.6 | 3250 | 2.2 | 3168 | 13.3 |
60968 | 650 | 17.6 | 3250 | 2.2 | 3200 | 13.3 |
60969 | 650 | 17.6 | 3250 | 2.2 | 3232 | 13.3 |
60970 | 650 | 17.6 | 3250 | 2.2 | 3264 | 13.3 |
61261 | 550 | 18.0 | 2750 | 2.5 | 2970 | 12.9 |
61113 | 600 | 16.9 | 3000 | 2.0 | 3270 | 12.9 |
61088 | 600 | 19.9 | 3000 | 3.7 | 2520 | 12.5 |
61094 | 600 | 19.7 | 3000 | 3.7 | 2700 | 12.4 |
61095 | 600 | 19.6 | 3000 | 3.7 | 2730 | 12.3 |
61096 | 600 | 19.6 | 3000 | 3.7 | 2760 | 12.3 |
61097 | 600 | 19.6 | 3000 | 3.7 | 2790 | 12.3 |
61098 | 600 | 19.6 | 3000 | 3.7 | 2820 | 12.3 |
61099 | 600 | 19.6 | 3000 | 3.7 | 2850 | 12.3 |
61100 | 600 | 19.6 | 3000 | 3.7 | 2880 | 12.3 |
61101 | 600 | 19.6 | 3000 | 3.7 | 2910 | 12.3 |
61103 | 600 | 16.9 | 3000 | 2.3 | 2970 | 12.2 |
61104 | 600 | 16.9 | 3000 | 2.3 | 3000 | 12.2 |
61105 | 600 | 16.9 | 3000 | 2.3 | 3030 | 12.2 |
61252 | 550 | 18.2 | 2750 | 3.1 | 2727 | 12.0 |
61260 | 550 | 18.0 | 2750 | 3.1 | 2943 | 11.8 |
60959 | 650 | 18.5 | 3250 | 3.4 | 2912 | 11.7 |
61106 | 600 | 16.2 | 3000 | 2.3 | 3060 | 11.5 |
61107 | 600 | 16.2 | 3000 | 2.3 | 3090 | 11.5 |
61108 | 600 | 16.2 | 3000 | 2.3 | 3120 | 11.5 |
61109 | 600 | 16.2 | 3000 | 2.3 | 3150 | 11.5 |
61110 | 600 | 16.2 | 3000 | 2.3 | 3180 | 11.5 |
61111 | 600 | 16.2 | 3000 | 2.3 | 3210 | 11.5 |
61112 | 600 | 16.2 | 3000 | 2.3 | 3240 | 11.5 |
61262 | 550 | 16.4 | 2750 | 2.5 | 2997 | 11.3 |
61102 | 600 | 17.9 | 3000 | 3.3 | 2940 | 11.2 |
61434 | 500 | 16.3 | 2500 | 2.8 | 2950 | 10.7 |
61435 | 500 | 16.3 | 2500 | 2.8 | 2975 | 10.7 |
61436 | 500 | 16.3 | 2500 | 2.8 | 3000 | 10.7 |
61437 | 500 | 16.3 | 2500 | 2.8 | 3025 | 10.7 |
61427 | 500 | 16.6 | 2500 | 3.0 | 2775 | 10.6 |
61263 | 550 | 15.4 | 2750 | 2.5 | 3024 | 10.4 |
61264 | 550 | 15.4 | 2750 | 2.5 | 3051 | 10.4 |
61265 | 550 | 15.4 | 2750 | 2.5 | 3078 | 10.4 |
61253 | 550 | 18.1 | 2750 | 4.0 | 2754 | 10.1 |
61254 | 550 | 18.0 | 2750 | 4.0 | 2781 | 10.0 |
61255 | 550 | 18.0 | 2750 | 4.0 | 2808 | 10.0 |
61256 | 550 | 18.0 | 2750 | 4.0 | 2835 | 10.0 |
61257 | 550 | 18.0 | 2750 | 4.0 | 2862 | 10.0 |
61258 | 550 | 18.0 | 2750 | 4.0 | 2889 | 10.0 |
61259 | 550 | 18.0 | 2750 | 4.0 | 2916 | 10.0 |
61266 | 550 | 14.9 | 2750 | 2.5 | 3105 | 9.8 |
61267 | 550 | 14.9 | 2750 | 2.5 | 3132 | 9.8 |
61268 | 550 | 14.9 | 2750 | 2.5 | 3159 | 9.8 |
61269 | 550 | 14.9 | 2750 | 2.5 | 3186 | 9.8 |
61270 | 550 | 14.9 | 2750 | 2.5 | 3213 | 9.8 |
61271 | 550 | 14.9 | 2750 | 2.5 | 3240 | 9.8 |
61272 | 550 | 14.9 | 2750 | 2.5 | 3267 | 9.8 |
61417 | 500 | 16.6 | 2500 | 3.4 | 2525 | 9.8 |
61438 | 500 | 14.5 | 2500 | 2.8 | 3050 | 8.9 |
61439 | 500 | 14.0 | 2500 | 2.8 | 3075 | 8.4 |
61440 | 500 | 14.0 | 2500 | 2.8 | 3100 | 8.4 |
61441 | 500 | 14.0 | 2500 | 2.8 | 3125 | 8.4 |
61442 | 500 | 13.5 | 2500 | 2.8 | 3150 | 7.9 |
61443 | 500 | 13.5 | 2500 | 2.8 | 3175 | 7.9 |
61444 | 500 | 13.5 | 2500 | 2.8 | 3200 | 7.9 |
61445 | 500 | 13.5 | 2500 | 2.8 | 3225 | 7.9 |
61446 | 500 | 13.5 | 2500 | 2.8 | 3250 | 7.9 |
61428 | 500 | 16.4 | 2500 | 4.4 | 2800 | 7.6 |
61429 | 500 | 16.3 | 2500 | 4.4 | 2825 | 7.5 |
61430 | 500 | 16.3 | 2500 | 4.4 | 2850 | 7.5 |
61431 | 500 | 16.3 | 2500 | 4.4 | 2875 | 7.5 |
61432 | 500 | 16.3 | 2500 | 4.4 | 2900 | 7.5 |
61433 | 500 | 16.3 | 2500 | 4.4 | 2925 | 7.5 |
Overall score = score_ratio - 2 * repetitive DNA content