Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign82 - back to list
Summary
./analyse_probe_search_results : Wed Nov 9 09:32:47 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign82 assembly : NCBIM34 bias : 5prime chromosome : 1 id : 73 strand : 1 ------------- Design window length: 2501bp All jobs for probe design are successful - total: 35 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 699 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 5prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 699/699 Putative probes that are unique : 273/699 Putative probes exceeding selection criteria : 492/699 (both unique and not unique) Putative probes with successfully-picked primers: 490/492 Identified 30 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
68842 | 850 | 4250 | - | 798 |
68883 | 800 | 4000 | - | 800 |
68884 | 800 | 4000 | - | 840 |
68927 | 750 | 3750 | - | 777 |
68928 | 750 | 3750 | - | 814 |
68929 | 750 | 3750 | - | 851 |
68930 | 750 | 3750 | - | 888 |
68977 | 700 | 3500 | - | 805 |
68978 | 700 | 3500 | - | 840 |
68979 | 700 | 3500 | - | 875 |
68980 | 700 | 3500 | - | 910 |
68981 | 700 | 3500 | - | 945 |
69031 | 650 | 3250 | - | 800 |
69032 | 650 | 3250 | - | 832 |
69033 | 650 | 3250 | - | 864 |
69034 | 650 | 3250 | - | 896 |
69035 | 650 | 3250 | - | 928 |
69036 | 650 | 3250 | - | 960 |
69037 | 650 | 3250 | - | 992 |
69090 | 600 | 3000 | - | 780 |
69091 | 600 | 3000 | - | 810 |
69092 | 600 | 3000 | - | 840 |
69093 | 600 | 3000 | - | 870 |
69094 | 600 | 3000 | - | 900 |
69095 | 600 | 3000 | - | 930 |
69096 | 600 | 3000 | - | 960 |
69097 | 600 | 3000 | - | 990 |
69098 | 600 | 3000 | - | 1020 |
69099 | 600 | 3000 | - | 1050 |
69157 | 550 | 2750 | - | 783 |
69158 | 550 | 2750 | - | 810 |
69159 | 550 | 2750 | - | 837 |
69160 | 550 | 2750 | - | 864 |
69161 | 550 | 2750 | - | 891 |
69162 | 550 | 2750 | - | 918 |
69163 | 550 | 2750 | - | 945 |
69164 | 550 | 2750 | - | 972 |
69165 | 550 | 2750 | - | 999 |
69166 | 550 | 2750 | - | 1026 |
69167 | 550 | 2750 | - | 1053 |
69168 | 550 | 2750 | - | 1080 |
69169 | 550 | 2750 | - | 1107 |
69209 | 500 | 2500 | - | 200 |
69232 | 500 | 2500 | - | 775 |
69233 | 500 | 2500 | - | 800 |
69234 | 500 | 2500 | - | 825 |
69235 | 500 | 2500 | - | 850 |
69236 | 500 | 2500 | - | 875 |
69237 | 500 | 2500 | - | 900 |
69238 | 500 | 2500 | - | 925 |
69239 | 500 | 2500 | - | 950 |
69240 | 500 | 2500 | - | 975 |
69241 | 500 | 2500 | - | 1000 |
69242 | 500 | 2500 | - | 1025 |
69243 | 500 | 2500 | - | 1050 |
69244 | 500 | 2500 | - | 1075 |
69245 | 500 | 2500 | - | 1100 |
69246 | 500 | 2500 | - | 1125 |
69247 | 500 | 2500 | - | 1150 |
68976 | 700 | 3500 | 0.6 | 770 |
69030 | 650 | 3250 | 0.9 | 768 |
68804 | 900 | 4500 | 1.0 | 765 |
69210 | 500 | 2500 | 1.6 | 225 |
68882 | 800 | 4000 | 1.8 | 760 |
68841 | 850 | 4250 | 2.1 | 756 |
69156 | 550 | 2750 | 3.3 | 756 |
69089 | 600 | 3000 | 4.0 | 750 |
69135 | 550 | 2750 | 4.0 | 189 |
68586 | 1300 | 6500 | 4.4 | 195 |
68587 | 1300 | 6500 | 4.4 | 260 |
68588 | 1300 | 6500 | 4.4 | 325 |
68926 | 750 | 3750 | 4.5 | 740 |
68605 | 1250 | 6250 | 4.6 | 186 |
68606 | 1250 | 6250 | 4.6 | 248 |
68607 | 1250 | 6250 | 4.6 | 310 |
68608 | 1250 | 6250 | 4.6 | 372 |
68626 | 1200 | 6000 | 4.8 | 180 |
68627 | 1200 | 6000 | 4.8 | 240 |
68628 | 1200 | 6000 | 4.8 | 300 |
68629 | 1200 | 6000 | 4.8 | 360 |
68630 | 1200 | 6000 | 4.8 | 420 |
69231 | 500 | 2500 | 4.8 | 750 |
68649 | 1150 | 5750 | 5.0 | 228 |
68650 | 1150 | 5750 | 5.0 | 285 |
68651 | 1150 | 5750 | 5.0 | 342 |
68652 | 1150 | 5750 | 5.0 | 399 |
68653 | 1150 | 5750 | 5.0 | 456 |
68654 | 1150 | 5750 | 5.0 | 513 |
68673 | 1100 | 5500 | 5.2 | 220 |
68674 | 1100 | 5500 | 5.2 | 275 |
68675 | 1100 | 5500 | 5.2 | 330 |
68676 | 1100 | 5500 | 5.2 | 385 |
68677 | 1100 | 5500 | 5.2 | 440 |
68678 | 1100 | 5500 | 5.2 | 495 |
68679 | 1100 | 5500 | 5.2 | 550 |
68699 | 1050 | 5250 | 5.4 | 208 |
68700 | 1050 | 5250 | 5.4 | 260 |
68701 | 1050 | 5250 | 5.4 | 312 |
68702 | 1050 | 5250 | 5.4 | 364 |
68703 | 1050 | 5250 | 5.4 | 416 |
68704 | 1050 | 5250 | 5.4 | 468 |
68705 | 1050 | 5250 | 5.4 | 520 |
68706 | 1050 | 5250 | 5.4 | 572 |
68975 | 700 | 3500 | 5.6 | 735 |
68727 | 1000 | 5000 | 5.7 | 200 |
68728 | 1000 | 5000 | 5.7 | 250 |
68729 | 1000 | 5000 | 5.7 | 300 |
68730 | 1000 | 5000 | 5.7 | 350 |
68731 | 1000 | 5000 | 5.7 | 400 |
68732 | 1000 | 5000 | 5.7 | 450 |
68733 | 1000 | 5000 | 5.7 | 500 |
68734 | 1000 | 5000 | 5.7 | 550 |
68735 | 1000 | 5000 | 5.7 | 600 |
68736 | 1000 | 5000 | 5.7 | 650 |
69029 | 650 | 3250 | 5.8 | 736 |
68758 | 950 | 4750 | 6.0 | 188 |
68759 | 950 | 4750 | 6.0 | 235 |
68760 | 950 | 4750 | 6.0 | 282 |
68761 | 950 | 4750 | 6.0 | 329 |
68762 | 950 | 4750 | 6.0 | 376 |
68763 | 950 | 4750 | 6.0 | 423 |
68764 | 950 | 4750 | 6.0 | 470 |
68765 | 950 | 4750 | 6.0 | 517 |
68766 | 950 | 4750 | 6.0 | 564 |
68767 | 950 | 4750 | 6.0 | 611 |
68768 | 950 | 4750 | 6.0 | 658 |
68769 | 950 | 4750 | 6.0 | 705 |
68803 | 900 | 4500 | 6.0 | 720 |
68791 | 900 | 4500 | 6.3 | 180 |
68792 | 900 | 4500 | 6.3 | 225 |
68793 | 900 | 4500 | 6.3 | 270 |
68794 | 900 | 4500 | 6.3 | 315 |
68795 | 900 | 4500 | 6.3 | 360 |
68796 | 900 | 4500 | 6.3 | 405 |
68797 | 900 | 4500 | 6.3 | 450 |
68798 | 900 | 4500 | 6.3 | 495 |
68799 | 900 | 4500 | 6.3 | 540 |
68800 | 900 | 4500 | 6.3 | 585 |
68801 | 900 | 4500 | 6.3 | 630 |
68802 | 900 | 4500 | 6.3 | 675 |
69211 | 500 | 2500 | 6.6 | 250 |
68828 | 850 | 4250 | 6.7 | 210 |
68829 | 850 | 4250 | 6.7 | 252 |
68830 | 850 | 4250 | 6.7 | 294 |
68831 | 850 | 4250 | 6.7 | 336 |
68832 | 850 | 4250 | 6.7 | 378 |
68833 | 850 | 4250 | 6.7 | 420 |
68834 | 850 | 4250 | 6.7 | 462 |
68835 | 850 | 4250 | 6.7 | 504 |
68836 | 850 | 4250 | 6.7 | 546 |
68837 | 850 | 4250 | 6.7 | 588 |
68838 | 850 | 4250 | 6.7 | 630 |
68839 | 850 | 4250 | 6.7 | 672 |
68840 | 850 | 4250 | 6.7 | 714 |
68881 | 800 | 4000 | 6.8 | 720 |
68868 | 800 | 4000 | 7.1 | 200 |
68869 | 800 | 4000 | 7.1 | 240 |
68870 | 800 | 4000 | 7.1 | 280 |
68871 | 800 | 4000 | 7.1 | 320 |
68872 | 800 | 4000 | 7.1 | 360 |
68873 | 800 | 4000 | 7.1 | 400 |
68874 | 800 | 4000 | 7.1 | 440 |
68875 | 800 | 4000 | 7.1 | 480 |
68876 | 800 | 4000 | 7.1 | 520 |
68877 | 800 | 4000 | 7.1 | 560 |
68878 | 800 | 4000 | 7.1 | 600 |
68879 | 800 | 4000 | 7.1 | 640 |
68880 | 800 | 4000 | 7.1 | 680 |
68911 | 750 | 3750 | 7.6 | 185 |
68912 | 750 | 3750 | 7.6 | 222 |
68913 | 750 | 3750 | 7.6 | 259 |
68914 | 750 | 3750 | 7.6 | 296 |
68915 | 750 | 3750 | 7.6 | 333 |
68916 | 750 | 3750 | 7.6 | 370 |
68917 | 750 | 3750 | 7.6 | 407 |
68918 | 750 | 3750 | 7.6 | 444 |
68919 | 750 | 3750 | 7.6 | 481 |
68920 | 750 | 3750 | 7.6 | 518 |
68921 | 750 | 3750 | 7.6 | 555 |
68922 | 750 | 3750 | 7.6 | 592 |
68923 | 750 | 3750 | 7.6 | 629 |
68924 | 750 | 3750 | 7.6 | 666 |
68925 | 750 | 3750 | 7.6 | 703 |
68960 | 700 | 3500 | 8.1 | 210 |
68961 | 700 | 3500 | 8.1 | 245 |
68962 | 700 | 3500 | 8.1 | 280 |
68963 | 700 | 3500 | 8.1 | 315 |
68964 | 700 | 3500 | 8.1 | 350 |
68965 | 700 | 3500 | 8.1 | 385 |
68966 | 700 | 3500 | 8.1 | 420 |
68967 | 700 | 3500 | 8.1 | 455 |
68968 | 700 | 3500 | 8.1 | 490 |
68969 | 700 | 3500 | 8.1 | 525 |
68970 | 700 | 3500 | 8.1 | 560 |
68971 | 700 | 3500 | 8.1 | 595 |
68972 | 700 | 3500 | 8.1 | 630 |
68973 | 700 | 3500 | 8.1 | 665 |
68974 | 700 | 3500 | 8.1 | 700 |
69155 | 550 | 2750 | 8.2 | 729 |
69012 | 650 | 3250 | 8.8 | 192 |
69013 | 650 | 3250 | 8.8 | 224 |
69014 | 650 | 3250 | 8.8 | 256 |
69015 | 650 | 3250 | 8.8 | 288 |
69016 | 650 | 3250 | 8.8 | 320 |
69017 | 650 | 3250 | 8.8 | 352 |
69018 | 650 | 3250 | 8.8 | 384 |
69019 | 650 | 3250 | 8.8 | 416 |
69020 | 650 | 3250 | 8.8 | 448 |
69021 | 650 | 3250 | 8.8 | 480 |
69022 | 650 | 3250 | 8.8 | 512 |
69023 | 650 | 3250 | 8.8 | 544 |
69024 | 650 | 3250 | 8.8 | 576 |
69025 | 650 | 3250 | 8.8 | 608 |
69026 | 650 | 3250 | 8.8 | 640 |
69027 | 650 | 3250 | 8.8 | 672 |
69028 | 650 | 3250 | 8.8 | 704 |
69136 | 550 | 2750 | 8.9 | 216 |
69088 | 600 | 3000 | 9.0 | 720 |
69070 | 600 | 3000 | 9.5 | 180 |
69071 | 600 | 3000 | 9.5 | 210 |
69072 | 600 | 3000 | 9.5 | 240 |
69073 | 600 | 3000 | 9.5 | 270 |
69074 | 600 | 3000 | 9.5 | 300 |
69075 | 600 | 3000 | 9.5 | 330 |
69076 | 600 | 3000 | 9.5 | 360 |
69077 | 600 | 3000 | 9.5 | 390 |
69078 | 600 | 3000 | 9.5 | 420 |
69079 | 600 | 3000 | 9.5 | 450 |
69080 | 600 | 3000 | 9.5 | 480 |
69081 | 600 | 3000 | 9.5 | 510 |
69082 | 600 | 3000 | 9.5 | 540 |
69083 | 600 | 3000 | 9.5 | 570 |
69084 | 600 | 3000 | 9.5 | 600 |
69085 | 600 | 3000 | 9.5 | 630 |
69086 | 600 | 3000 | 9.5 | 660 |
69087 | 600 | 3000 | 9.5 | 690 |
69230 | 500 | 2500 | 9.8 | 725 |
69137 | 550 | 2750 | 10.4 | 243 |
69138 | 550 | 2750 | 10.4 | 270 |
69139 | 550 | 2750 | 10.4 | 297 |
69140 | 550 | 2750 | 10.4 | 324 |
69141 | 550 | 2750 | 10.4 | 351 |
69142 | 550 | 2750 | 10.4 | 378 |
69143 | 550 | 2750 | 10.4 | 405 |
69144 | 550 | 2750 | 10.4 | 432 |
69145 | 550 | 2750 | 10.4 | 459 |
69146 | 550 | 2750 | 10.4 | 486 |
69147 | 550 | 2750 | 10.4 | 513 |
69148 | 550 | 2750 | 10.4 | 540 |
69149 | 550 | 2750 | 10.4 | 567 |
69150 | 550 | 2750 | 10.4 | 594 |
69151 | 550 | 2750 | 10.4 | 621 |
69152 | 550 | 2750 | 10.4 | 648 |
69153 | 550 | 2750 | 10.4 | 675 |
69154 | 550 | 2750 | 10.4 | 702 |
69212 | 500 | 2500 | 11.4 | 275 |
69213 | 500 | 2500 | 11.4 | 300 |
69214 | 500 | 2500 | 11.4 | 325 |
69215 | 500 | 2500 | 11.4 | 350 |
69216 | 500 | 2500 | 11.4 | 375 |
69217 | 500 | 2500 | 11.4 | 400 |
69218 | 500 | 2500 | 11.4 | 425 |
69219 | 500 | 2500 | 11.4 | 450 |
69220 | 500 | 2500 | 11.4 | 475 |
69221 | 500 | 2500 | 11.4 | 500 |
69222 | 500 | 2500 | 11.4 | 525 |
69223 | 500 | 2500 | 11.4 | 550 |
69224 | 500 | 2500 | 11.4 | 575 |
69225 | 500 | 2500 | 11.4 | 600 |
69226 | 500 | 2500 | 11.4 | 625 |
69227 | 500 | 2500 | 11.4 | 650 |
69228 | 500 | 2500 | 11.4 | 675 |
69229 | 500 | 2500 | 11.4 | 700 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
68595 | 1300 | 38.0 | 6500 | 0.7 | 780 | 36.6 |
68615 | 1250 | 36.5 | 6250 | - | 806 | 36.5 |
68636 | 1200 | 35.1 | 6000 | - | 780 | 35.1 |
68637 | 1200 | 35.1 | 6000 | - | 840 | 35.1 |
68583 | 1300 | 43.0 | 6500 | 4.4 | 0 | 34.3 |
68584 | 1300 | 43.0 | 6500 | 4.4 | 65 | 34.3 |
68585 | 1300 | 43.0 | 6500 | 4.4 | 130 | 34.3 |
68659 | 1150 | 33.6 | 5750 | - | 798 | 33.6 |
68660 | 1150 | 33.6 | 5750 | - | 855 | 33.6 |
68661 | 1150 | 33.6 | 5750 | - | 912 | 33.6 |
68603 | 1250 | 41.4 | 6250 | 4.6 | 62 | 32.3 |
68604 | 1250 | 41.4 | 6250 | 4.6 | 124 | 32.3 |
68684 | 1100 | 32.2 | 5500 | - | 825 | 32.2 |
68685 | 1100 | 32.2 | 5500 | - | 880 | 32.2 |
68686 | 1100 | 32.2 | 5500 | - | 935 | 32.2 |
68614 | 1250 | 36.5 | 6250 | 2.4 | 744 | 31.7 |
68683 | 1100 | 32.2 | 5500 | 0.4 | 770 | 31.4 |
68589 | 1300 | 40.1 | 6500 | 4.4 | 390 | 31.4 |
68710 | 1050 | 30.7 | 5250 | - | 780 | 30.7 |
68711 | 1050 | 30.7 | 5250 | - | 832 | 30.7 |
68712 | 1050 | 30.7 | 5250 | - | 884 | 30.7 |
68713 | 1050 | 30.7 | 5250 | - | 936 | 30.7 |
68714 | 1050 | 30.7 | 5250 | - | 988 | 30.7 |
68638 | 1200 | 35.1 | 6000 | 2.4 | 900 | 30.3 |
68590 | 1300 | 38.0 | 6500 | 4.4 | 455 | 29.2 |
68591 | 1300 | 38.0 | 6500 | 4.4 | 520 | 29.2 |
68592 | 1300 | 38.0 | 6500 | 4.4 | 585 | 29.2 |
68593 | 1300 | 38.0 | 6500 | 4.4 | 650 | 29.2 |
68594 | 1300 | 38.0 | 6500 | 4.4 | 715 | 29.2 |
68739 | 1000 | 29.2 | 5000 | - | 800 | 29.2 |
68740 | 1000 | 29.2 | 5000 | - | 850 | 29.2 |
68741 | 1000 | 29.2 | 5000 | - | 900 | 29.2 |
68742 | 1000 | 29.2 | 5000 | - | 950 | 29.2 |
68743 | 1000 | 29.2 | 5000 | - | 1000 | 29.2 |
68744 | 1000 | 29.2 | 5000 | - | 1050 | 29.2 |
68687 | 1100 | 32.2 | 5500 | 1.7 | 990 | 28.7 |
68658 | 1150 | 33.6 | 5750 | 2.9 | 741 | 27.9 |
68771 | 950 | 27.8 | 4750 | - | 799 | 27.8 |
68805 | 900 | 27.8 | 4500 | - | 810 | 27.8 |
68772 | 950 | 27.8 | 4750 | - | 846 | 27.8 |
68773 | 950 | 27.8 | 4750 | - | 893 | 27.8 |
68774 | 950 | 27.8 | 4750 | - | 940 | 27.8 |
68775 | 950 | 27.8 | 4750 | - | 987 | 27.8 |
68776 | 950 | 27.8 | 4750 | - | 1034 | 27.8 |
68777 | 950 | 27.8 | 4750 | - | 1081 | 27.8 |
68715 | 1050 | 30.7 | 5250 | 1.8 | 1040 | 27.1 |
68806 | 900 | 26.3 | 4500 | - | 855 | 26.3 |
68807 | 900 | 26.3 | 4500 | - | 900 | 26.3 |
68808 | 900 | 26.3 | 4500 | - | 945 | 26.3 |
68809 | 900 | 26.3 | 4500 | - | 990 | 26.3 |
68810 | 900 | 26.3 | 4500 | - | 1035 | 26.3 |
68811 | 900 | 26.3 | 4500 | - | 1080 | 26.3 |
68812 | 900 | 26.3 | 4500 | - | 1125 | 26.3 |
68813 | 900 | 26.3 | 4500 | - | 1170 | 26.3 |
68843 | 850 | 26.2 | 4250 | - | 840 | 26.2 |
68844 | 850 | 26.2 | 4250 | - | 882 | 26.2 |
68885 | 800 | 25.2 | 4000 | - | 880 | 25.2 |
68845 | 850 | 24.9 | 4250 | - | 924 | 24.9 |
68846 | 850 | 24.9 | 4250 | - | 966 | 24.9 |
68847 | 850 | 24.9 | 4250 | - | 1008 | 24.9 |
68848 | 850 | 24.9 | 4250 | - | 1050 | 24.9 |
68849 | 850 | 24.9 | 4250 | - | 1092 | 24.9 |
68850 | 850 | 24.9 | 4250 | - | 1134 | 24.9 |
68851 | 850 | 24.9 | 4250 | - | 1176 | 24.9 |
68852 | 850 | 24.9 | 4250 | - | 1218 | 24.9 |
68886 | 800 | 24.7 | 4000 | - | 920 | 24.7 |
68770 | 950 | 29.3 | 4750 | 2.3 | 752 | 24.7 |
68931 | 750 | 24.5 | 3750 | - | 925 | 24.5 |
68738 | 1000 | 29.2 | 5000 | 2.4 | 750 | 24.4 |
68745 | 1000 | 29.2 | 5000 | 2.9 | 1100 | 23.4 |
68887 | 800 | 23.4 | 4000 | - | 960 | 23.4 |
68888 | 800 | 23.4 | 4000 | - | 1000 | 23.4 |
68889 | 800 | 23.4 | 4000 | - | 1040 | 23.4 |
68890 | 800 | 23.4 | 4000 | - | 1080 | 23.4 |
68891 | 800 | 23.4 | 4000 | - | 1120 | 23.4 |
68892 | 800 | 23.4 | 4000 | - | 1160 | 23.4 |
68893 | 800 | 23.4 | 4000 | - | 1200 | 23.4 |
68894 | 800 | 23.4 | 4000 | - | 1240 | 23.4 |
68954 | 700 | 23.2 | 3500 | - | 0 | 23.2 |
68932 | 750 | 23.1 | 3750 | - | 962 | 23.1 |
68616 | 1250 | 30.0 | 6250 | 3.8 | 868 | 22.5 |
68982 | 700 | 22.0 | 3500 | - | 980 | 22.0 |
68709 | 1050 | 30.7 | 5250 | 4.4 | 728 | 21.9 |
68933 | 750 | 21.9 | 3750 | - | 999 | 21.9 |
68934 | 750 | 21.9 | 3750 | - | 1036 | 21.9 |
68935 | 750 | 21.9 | 3750 | - | 1073 | 21.9 |
68936 | 750 | 21.9 | 3750 | - | 1110 | 21.9 |
68937 | 750 | 21.9 | 3750 | - | 1147 | 21.9 |
68938 | 750 | 21.9 | 3750 | - | 1184 | 21.9 |
68939 | 750 | 21.9 | 3750 | - | 1221 | 21.9 |
68940 | 750 | 21.9 | 3750 | - | 1258 | 21.9 |
68941 | 750 | 21.9 | 3750 | - | 1295 | 21.9 |
69038 | 650 | 21.7 | 3250 | - | 1024 | 21.7 |
68983 | 700 | 21.6 | 3500 | - | 1015 | 21.6 |
69006 | 650 | 21.5 | 3250 | - | 0 | 21.5 |
69007 | 650 | 21.5 | 3250 | - | 32 | 21.5 |
69008 | 650 | 21.5 | 3250 | - | 64 | 21.5 |
68984 | 700 | 20.5 | 3500 | - | 1050 | 20.5 |
68985 | 700 | 20.5 | 3500 | - | 1085 | 20.5 |
68986 | 700 | 20.5 | 3500 | - | 1120 | 20.5 |
68987 | 700 | 20.5 | 3500 | - | 1155 | 20.5 |
68988 | 700 | 20.5 | 3500 | - | 1190 | 20.5 |
68989 | 700 | 20.5 | 3500 | - | 1225 | 20.5 |
68990 | 700 | 20.5 | 3500 | - | 1260 | 20.5 |
68991 | 700 | 20.5 | 3500 | - | 1295 | 20.5 |
68992 | 700 | 20.5 | 3500 | - | 1330 | 20.5 |
68993 | 700 | 20.5 | 3500 | - | 1365 | 20.5 |
69039 | 650 | 20.1 | 3250 | - | 1056 | 20.1 |
69064 | 600 | 19.9 | 3000 | - | 0 | 19.9 |
69065 | 600 | 19.9 | 3000 | - | 30 | 19.9 |
69066 | 600 | 19.9 | 3000 | - | 60 | 19.9 |
69067 | 600 | 19.9 | 3000 | - | 90 | 19.9 |
68662 | 1150 | 27.6 | 5750 | 4.2 | 969 | 19.3 |
69040 | 650 | 19.0 | 3250 | - | 1088 | 19.0 |
69041 | 650 | 19.0 | 3250 | - | 1120 | 19.0 |
69042 | 650 | 19.0 | 3250 | - | 1152 | 19.0 |
69043 | 650 | 19.0 | 3250 | - | 1184 | 19.0 |
69044 | 650 | 19.0 | 3250 | - | 1216 | 19.0 |
69045 | 650 | 19.0 | 3250 | - | 1248 | 19.0 |
69046 | 650 | 19.0 | 3250 | - | 1280 | 19.0 |
69047 | 650 | 19.0 | 3250 | - | 1312 | 19.0 |
69048 | 650 | 19.0 | 3250 | - | 1344 | 19.0 |
69049 | 650 | 19.0 | 3250 | - | 1376 | 19.0 |
69050 | 650 | 19.0 | 3250 | - | 1408 | 19.0 |
68942 | 750 | 21.9 | 3750 | 1.5 | 1332 | 19.0 |
69100 | 600 | 18.9 | 3000 | - | 1080 | 18.9 |
69068 | 600 | 19.9 | 3000 | 0.5 | 120 | 18.9 |
69101 | 600 | 18.5 | 3000 | - | 1110 | 18.5 |
69128 | 550 | 18.2 | 2750 | - | 0 | 18.2 |
69129 | 550 | 18.2 | 2750 | - | 27 | 18.2 |
69130 | 550 | 18.2 | 2750 | - | 54 | 18.2 |
69131 | 550 | 18.2 | 2750 | - | 81 | 18.2 |
69132 | 550 | 18.2 | 2750 | - | 108 | 18.2 |
69133 | 550 | 18.2 | 2750 | - | 135 | 18.2 |
69134 | 550 | 18.2 | 2750 | - | 162 | 18.2 |
68955 | 700 | 23.2 | 3500 | 2.6 | 35 | 18.0 |
69102 | 600 | 17.5 | 3000 | - | 1140 | 17.5 |
69103 | 600 | 17.5 | 3000 | - | 1170 | 17.5 |
69104 | 600 | 17.5 | 3000 | - | 1200 | 17.5 |
69105 | 600 | 17.5 | 3000 | - | 1230 | 17.5 |
69106 | 600 | 17.5 | 3000 | - | 1260 | 17.5 |
69107 | 600 | 17.5 | 3000 | - | 1290 | 17.5 |
69108 | 600 | 17.5 | 3000 | - | 1320 | 17.5 |
69109 | 600 | 17.5 | 3000 | - | 1350 | 17.5 |
69110 | 600 | 17.5 | 3000 | - | 1380 | 17.5 |
69111 | 600 | 17.5 | 3000 | - | 1410 | 17.5 |
69112 | 600 | 17.5 | 3000 | - | 1440 | 17.5 |
69113 | 600 | 17.5 | 3000 | - | 1470 | 17.5 |
69170 | 550 | 17.0 | 2750 | - | 1134 | 17.0 |
69171 | 550 | 17.0 | 2750 | - | 1161 | 17.0 |
69201 | 500 | 16.6 | 2500 | - | 0 | 16.6 |
69202 | 500 | 16.6 | 2500 | - | 25 | 16.6 |
69203 | 500 | 16.6 | 2500 | - | 50 | 16.6 |
69204 | 500 | 16.6 | 2500 | - | 75 | 16.6 |
69205 | 500 | 16.6 | 2500 | - | 100 | 16.6 |
69206 | 500 | 16.6 | 2500 | - | 125 | 16.6 |
69207 | 500 | 16.6 | 2500 | - | 150 | 16.6 |
69208 | 500 | 16.6 | 2500 | - | 175 | 16.6 |
69248 | 500 | 16.3 | 2500 | - | 1175 | 16.3 |
69172 | 550 | 16.1 | 2750 | - | 1188 | 16.1 |
69173 | 550 | 16.1 | 2750 | - | 1215 | 16.1 |
69174 | 550 | 16.1 | 2750 | - | 1242 | 16.1 |
69175 | 550 | 16.1 | 2750 | - | 1269 | 16.1 |
69176 | 550 | 16.1 | 2750 | - | 1296 | 16.1 |
69177 | 550 | 16.1 | 2750 | - | 1323 | 16.1 |
69178 | 550 | 16.1 | 2750 | - | 1350 | 16.1 |
69179 | 550 | 16.1 | 2750 | - | 1377 | 16.1 |
69180 | 550 | 16.1 | 2750 | - | 1404 | 16.1 |
69181 | 550 | 16.1 | 2750 | - | 1431 | 16.1 |
69182 | 550 | 16.1 | 2750 | - | 1458 | 16.1 |
69183 | 550 | 16.1 | 2750 | - | 1485 | 16.1 |
69184 | 550 | 16.1 | 2750 | - | 1512 | 16.1 |
69249 | 500 | 15.4 | 2500 | - | 1200 | 15.4 |
69250 | 500 | 15.4 | 2500 | - | 1225 | 15.4 |
69251 | 500 | 14.6 | 2500 | - | 1250 | 14.6 |
69252 | 500 | 14.6 | 2500 | - | 1275 | 14.6 |
69253 | 500 | 14.6 | 2500 | - | 1300 | 14.6 |
69254 | 500 | 14.6 | 2500 | - | 1325 | 14.6 |
69255 | 500 | 14.6 | 2500 | - | 1350 | 14.6 |
69256 | 500 | 14.6 | 2500 | - | 1375 | 14.6 |
69257 | 500 | 14.6 | 2500 | - | 1400 | 14.6 |
69258 | 500 | 14.6 | 2500 | - | 1425 | 14.6 |
69259 | 500 | 14.6 | 2500 | - | 1450 | 14.6 |
69260 | 500 | 14.6 | 2500 | - | 1475 | 14.6 |
69261 | 500 | 14.6 | 2500 | - | 1500 | 14.6 |
69262 | 500 | 14.6 | 2500 | - | 1525 | 14.6 |
69263 | 500 | 14.6 | 2500 | - | 1550 | 14.6 |
69051 | 650 | 19.0 | 3250 | 2.9 | 1440 | 13.2 |
69185 | 550 | 16.1 | 2750 | 3.3 | 1539 | 9.5 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
68602 | 1250 | 41.4 | 6250 | 4.6 | 0 | 32.3 |
68623 | 1200 | 39.7 | 6000 | 4.8 | 0 | 30.2 |
68624 | 1200 | 39.7 | 6000 | 4.8 | 60 | 30.2 |
68625 | 1200 | 39.7 | 6000 | 4.8 | 120 | 30.2 |
68609 | 1250 | 38.6 | 6250 | 4.6 | 434 | 29.5 |
68631 | 1200 | 37.7 | 6000 | 4.8 | 480 | 28.2 |
68645 | 1150 | 38.1 | 5750 | 5.0 | 0 | 28.2 |
68646 | 1150 | 38.1 | 5750 | 5.0 | 57 | 28.2 |
68647 | 1150 | 38.1 | 5750 | 5.0 | 114 | 28.2 |
68648 | 1150 | 38.1 | 5750 | 5.0 | 171 | 28.2 |
68610 | 1250 | 36.5 | 6250 | 4.6 | 496 | 27.4 |
68611 | 1250 | 36.5 | 6250 | 4.6 | 558 | 27.4 |
68612 | 1250 | 36.5 | 6250 | 4.6 | 620 | 27.4 |
68613 | 1250 | 36.5 | 6250 | 4.6 | 682 | 27.4 |
68778 | 950 | 27.8 | 4750 | 0.7 | 1128 | 26.3 |
68635 | 1200 | 35.1 | 6000 | 4.5 | 720 | 26.1 |
68632 | 1200 | 35.1 | 6000 | 4.8 | 540 | 25.6 |
68633 | 1200 | 35.1 | 6000 | 4.8 | 600 | 25.6 |
68634 | 1200 | 35.1 | 6000 | 4.8 | 660 | 25.6 |
68655 | 1150 | 35.5 | 5750 | 5.0 | 570 | 25.6 |
68656 | 1150 | 33.6 | 5750 | 5.0 | 627 | 23.7 |
68657 | 1150 | 33.6 | 5750 | 5.0 | 684 | 23.7 |
68895 | 800 | 23.4 | 4000 | 1.1 | 1280 | 21.1 |
68906 | 750 | 24.8 | 3750 | 4.4 | 0 | 16.0 |
69264 | 500 | 14.6 | 2500 | 0.8 | 1575 | 13.0 |
69009 | 650 | 21.5 | 3250 | 4.5 | 96 | 12.6 |
68814 | 900 | 22.2 | 4500 | 4.9 | 1215 | 12.4 |
68994 | 700 | 20.5 | 3500 | 4.1 | 1400 | 12.2 |
68853 | 850 | 21.1 | 4250 | 4.6 | 1260 | 12.0 |
69114 | 600 | 17.5 | 3000 | 4.8 | 1500 | 7.9 |
Overall score = score_ratio - 2 * repetitive DNA content